LOC110524661 (LOC106560372)


Basic Information

Item Value
gene id LOC110524661
gene name LOC106560372
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 81277266 ~ 81279193 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604506.2
CAGGGCGCGTGTCTCCGGAGACAAATCTACTTTCAACTGCTAAACAGGCACGAGTTTGGGTGCCTCCCGTTCCACTGTACATCGGAGCTCCTCGGAccgaaacagacagacaggtgcacTGACTACACCACTGAAACAGACTCACTGGCTACACCTGCGCCTCTCTAAAgaacaacaacagacagacagattttcTTACTTTCTGATTAGGAGAACCGCGCTGTACTGCAACGAACTCTGACAGCCACACACTGACAGgtgagaggagaagggggaaaaCAATACATATAAAAATGAAACTTGAAGTGTTCTCCGCAAGCCACTTCGTTCAGAAGCCTATGGAGGTTTGCAGTCACAGTGATGCGGAAGGTAGCGTCCCCTCTCCCCTATCCGGGGACGAGCTGGGCTCAGACGGGGACTGCGTGGCCAACAGCCCGGCACCTGCTACCCCGAGCAGCAGCGATGGCAAGGGAAAGCCCTACACCCGCAGACCTAAGCCGCCCTACTCCTACATCGCACTCATCGCCATGGCCATCCGGGACTCCGGCAGCGGCAGGTTGACTCTGGCCGAGATCAACGACTACTTGATGAAGAAGTTCCCGTTCTTCCGGGGCAGCTACACCGGGTGGAGGAACTCGGTGCGCCACAACCTTTCGCTGAACGACTGTTTCCTCAAAGTGCTCCGGGACCCTTCCAGGCCATGGGGCAAGGACAACTACTGGATGCTGAACCCGCACAGCGAGTACACCTTCGCTGACGGGGTGTTCCGTCGCAGGAGGAAGCGCATCACTAAGGGCCGGTCCGGTGGTTCCAATAAGGACACCGAGACCCCTGACATCCAGACACCAGGCGAGGAGACTCGCATCTCGGCCCCTGCTTCTGTTCCCTCCCGGGAGGAGAGGGTGATGGGAGCCAAGTTCTCCAGCTCTTCCAGCTCCTTCTCCATCGATAGCATCCTCAGCAAGCCCTTCATACGTAGGGAGGACAGAGACCACACCGATAGAGACAGTGCACATGCCAACCCCGGTGCCCACCGGCTCTACTGGCCCGCGGGTTCTCACCACATGCTGCCCTACACACTGGCCTACCCACCGCTACCCGCTGTTAtggcacacgcacatgcacagcACTCTTACCACCAGGTCAGCACCGGCGCGTCACACATGTTGAACGTGTACAGGTGCAGCCTCGCTGAGCACGCAGAGCACACCAGGGACCCACTCACAGCTCTCCACATGACGTCGCAGGGCCACATGCCAAACTCCGAGGCTGCTTTCTCCCCTGTGAAAATGCACACAGCGCGAGTTGGCAGCTGTCATCCTTTCCAGATAGATTCATTGCTCTCCTAAAGCCAACGTAACAGACGATAATGTAATTATGTATCTTAAATTTGCCATGTGCACTTTCCTATGCGCTCTACGTTTTTCGAATGTCTTAAAAAGGGCATTTCAGTGCATTTAATTAACTGTTTCTGATTATAACAAGTCGTTTAGCGGTGATGAATAACGTAATGTGTTATTGTTGTCATGACTTTATTTCTATCTGGTTACTACTAGGACGAAGCAAATGAGTTGCAATCTGACATGCCTttccactgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtttgtttgttacgtGGTTCTTAGGTCATTTCTAATGTAAACGACGGCTACCATGTGCCAACGATTTGAAAAATATAGTACTATGTATGTGTTGATGTAGTTTTGTATGACTTGctgaaaaatattgtattttaaaatatttgttgGATTGTTGATTACTCCATGTAAGGAGGCTGCACAAAAAGAAAGGAAATACACGGGCTGATTTCCTAAACATTGATTCATGCATGGACAATATTTTTTATGAGAGAAAATAAAAACTCATTGGGGAAAAAATA

Function

NR:

description
forkhead box protein Q1-like

GO: NA

KEGG:

id description
K09410 FOXQ, HFH1; forkhead box protein Q

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604506.2 True 1928 mRNA 0.51 1 81277266 81279193

Neighbor

gene id symbol gene type direction distance location
LOC110524660 LOC106560371 coding downstream 6210 81265457 ~ 81271056 (-)
LOC110524659 LOC106560369 coding downstream 37082 81237982 ~ 81240184 (-)
serpinb1 ileu coding downstream 415901 80839898 ~ 80861365 (-)
bmb LOC106560378 coding downstream 458893 80809362 ~ 80818373 (-)
LOC118964670 NA coding downstream 489471 80781794 ~ 80787795 (-)
LOC110524663 LOC106560370 coding upstream 301125 81580318 ~ 81589232 (-)
LOC110524664 LOC106560367 coding upstream 355170 81634363 ~ 81637591 (-)
LOC110524665 slc22a23 coding upstream 360269 81639462 ~ 81767595 (-)
LOC110524669 LOC106584070 coding upstream 564326 81843519 ~ 81889913 (-)
igfbp3 igfbp-3a1 coding upstream 995894 82275087 ~ 82346684 (-)
G446059 NA non-coding downstream 13047 81263983 ~ 81264219 (-)
G446011 NA non-coding downstream 16334 81176684 ~ 81260932 (-)
G445985 NA non-coding downstream 147695 81129059 ~ 81129571 (-)
G445963 NA non-coding downstream 185625 81090803 ~ 81091641 (-)
G445927 NA non-coding downstream 244883 81005174 ~ 81032383 (-)
G446070 NA non-coding upstream 2596 81281789 ~ 81282170 (-)
G446074 NA non-coding upstream 9357 81288550 ~ 81288822 (-)
G446082 NA non-coding upstream 18844 81298037 ~ 81298246 (-)
G446086 NA non-coding upstream 27856 81307049 ~ 81307389 (-)
G446097 NA non-coding upstream 42538 81321731 ~ 81322015 (-)
G445220 NA other downstream 1015761 80245943 ~ 80261505 (-)
LOC118964653 LOC106581256 other downstream 1051065 80223240 ~ 80233361 (-)
G445197 NA other downstream 1100186 80176762 ~ 80177080 (-)
G445115 NA other downstream 1289562 79982461 ~ 79987704 (-)
G444691 LOC106605670 other downstream 1545730 79730987 ~ 79731536 (-)
G446775 NA other upstream 664092 81943285 ~ 81943611 (-)
G447220 NA other upstream 1111462 82390655 ~ 82391224 (-)
G447993 NA other upstream 2038320 83315161 ~ 83319715 (-)
G448079 NA other upstream 2231160 83510353 ~ 83520273 (-)
G448411 NA other upstream 2592409 83871602 ~ 83873308 (-)

Expression


Co-expression Network