LOC110524663 (LOC106560370)


Basic Information

Item Value
gene id LOC110524663
gene name LOC106560370
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 81580318 ~ 81589232 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978543.1
TGATTTCAAAACTCAAAGGGGTTTCGAGTTTCAGAGTGTCTCTTGGCTAGAGATGAATCCGGATTCGGACTACGGCATGTCTACAATGAGCTGTGGAAACGGGAAGCTCCGCTCGTGGCTGATCGAGCAGGTTGACACCGGGAAGTACGCAGGCCTCGTGTGGGAGAACGACGACAAGAGCATCTTCAGGATACCGTGGAAGCACGCAGGCAAGCAGGACTACAACCGGGACGAGGATGCCGCTCTCTTCAAGGCTTGGGCGCTGTTTAAGGGCAAGTTTCGTGAGGGCATCGACAAACCTGACCCGCCAACGTGGAAGACGCGCCTGCGGTGCGCACTCAACAAAAGTAACGACTTCGAAGAGCTCGTGGAAAAGAGTCAACTGGACATCTCAGACCCCTACAAAGTCTACCGGATCATACCCGAGGGCGCCAAGAGACATTTCTTGCTATCAGGATCCAAACAGGAGGATGGTGGCAGCCCGCAGACTCCCCCGAGTTATCCCATGCACCCCTCCTACCCCGCCCTACAGACTCAGGTGTCTGGGTACATGTCCAGTGCAGAGCGAGGCTGGATGAGGGACTATCTTCCAGAGCAGACCTCGCTCCCTGAGCTGCCCTATGCCCAGTGTTCCTACCCCTCACGCAGCCTACCCTGGGCCCAGGGCCCCAGCATGGACAACGGGTACCAGATCACAGGGTCCTTCTACACCTACCCTACTGATGGCCAGCCCTCCCCCTTCACACTGGACACCAGCATGAGATCAGCCGAGGCCCTCTCAGaTATGCGGTTACATGTGTCAGTGTTCTACCGGGACTCATTGTGGAGGGAGGTGACCACCTCTAGTCCAGAGGGCTGTCGCATAACTCCCTGCTCCCCAGACGACAAGCTGTATTCCCCCACTGGAGGTCCAGACCTGGTGCCCCTACCCCTGGACAGCCTCCCAGccctggggaggggggaggagtgcCCCCCCAGCCCCCCTGGTGGTACCCTGGAGAGGGGCGTGCTGCTATGGATGGCCCCAGATGGTCTCTACGCTCGGCGGCTGTGCCAGGAGAGAGTGTTCTGGGAGGGAGGGTTATCGCCCTACGGAGATAAACCCAACAAGCTGGAGAGAGAacacacctgtaaactactgCACACACAGGACTACTTTGCAGAGCTGCAGGGCTATGCCCTCCATGGCCGGCCGCCTCCACGTCTCCAGGTGCTGCTGAGTTTTGGAGACGAATGTCTGGacccacagagacagaggaggaccCTCACTGTACAGGTGGAGCCCATGTTTGCCAGGCAACTCCTATACTACACCCAGCACCAGCAGACCAGCGGACACTACTACCGCAGCTACGACCTCTCCCTCCCAGGGGTCACGGAACACAGCATGACACCTGCTTTAACCGAGGACTACCAGAGGGTCATCACgcatcaccatagcaacaccctgCAGGACTGACATATTTGGCCAGCTCTGATCACAGTCAGACTGCGGTGCAGgatatggggagaggaggagatgggagaaagcctggggagaggaggagagtcgTTTCCCTGTACTCTGGATCCCAGATTTCACTCAAAGCCGAAGCAGAACTATGCCACTCCAATCCAAGACAAACTGAACCAAGCCAGGTTGAACTGAACCAAGCCAGGCCAGACTGAATTGAACCAAGCCAGGCTATGGAGGAACATACCCCGGGACCACTGAAGAGATTGTAACAGATAGTTGTATATTgtagatgtgtttgtgtgttgtaagGACTCAAGGGAATCAATGTTCCAAATTTTCTTTGGAACAAACTTGATTTTAACAACTCAGGGAGCCGTCCTTTAGCCGTAGAGACTCAAACTTGATTGACATTTTGTGTTTCAACGTCCACTTTCTGACAGAAAATAACTGACAGCTGTAGTGAttgtattgacatgtttttttatgTGCTTAATTGTGTTTGCTCAATTTCTTCTGTAACTATGTTAGACATTTTACTtgactactgttgctactactgtATGTAGATTTCCCAGCATCAATACTGAATAATAGGGAATACTGTAATAGAGATGACCAAAGACGGCCTCTGAGATTGAACCACACTGAAACACTGACTAGCATGCTGAATCTTCGATAAACTCAGTGAGATTGGACCACAATGAAACACTGACTAGCATGCTGAATCTTCGATAAACTCAGTGAGATTGGACCACACTGAAACACTGACTAGCATGCTGAATCTTCGATAAACTCAGTGAGATTGGACCACACTGAAACACTGACTAGCATGCTGAATCTTCGATAAACTCAGTGAGATTGAACCACACTGAAACACTGACTAGCATGCTGAATCTTCGATAAACTCAGTGAGTTTGGACCACACTGAAACACTGACTAGCATGCTGAATCTTCGATAAACTCAGTGAGATTGGACCACACTGAAACACTGACTAGCATGCTGAATCTTCGATAAACTCAGTGAGATTGGACCACACTGAAACACTGACTAGCATGCTGAATCTTCGATAAACTCAGTGAGATTGGACCACACTGAAACACTGACTAGCATGCTGAACCCTTCAATAAGCTCAGTCTGTCATACATACGGAACATGTTCTgtaatagaaaaataaaaaattgtaccAACGCAAAAA

Function

NR:

description
interferon regulatory factor 4-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978543.1 True 2652 mRNA 0.51 9 81580318 81589232

Neighbor

gene id symbol gene type direction distance location
LOC110524661 LOC106560372 coding downstream 301125 81277266 ~ 81279193 (-)
LOC110524660 LOC106560371 coding downstream 309262 81265457 ~ 81271056 (-)
LOC110524659 LOC106560369 coding downstream 340134 81237982 ~ 81240184 (-)
serpinb1 ileu coding downstream 718953 80839898 ~ 80861365 (-)
bmb LOC106560378 coding downstream 761945 80809362 ~ 80818373 (-)
LOC110524664 LOC106560367 coding upstream 45131 81634363 ~ 81637591 (-)
LOC110524665 slc22a23 coding upstream 50230 81639462 ~ 81767595 (-)
LOC110524669 LOC106584070 coding upstream 254287 81843519 ~ 81889913 (-)
igfbp3 igfbp-3a1 coding upstream 685855 82275087 ~ 82346684 (-)
si:ch211-191a24.3 LOC106560396 coding upstream 843983 82433215 ~ 82536323 (-)
G446595 NA non-coding downstream 33046 81545988 ~ 81547272 (-)
G446555 NA non-coding downstream 165367 81414557 ~ 81414951 (-)
G446556 NA non-coding downstream 170696 81408942 ~ 81409622 (-)
G446129 NA non-coding downstream 227740 81352334 ~ 81352578 (-)
G446128 NA non-coding downstream 229024 81350940 ~ 81351294 (-)
G446662 NA non-coding upstream 98941 81688173 ~ 81688684 (-)
G446664 NA non-coding upstream 112423 81701655 ~ 81701869 (-)
G446666 NA non-coding upstream 131783 81721015 ~ 81722008 (-)
G446673 NA non-coding upstream 155248 81744480 ~ 81744716 (-)
G446676 NA non-coding upstream 161150 81750382 ~ 81751286 (-)
G445220 NA other downstream 1318813 80245943 ~ 80261505 (-)
LOC118964653 LOC106581256 other downstream 1354117 80223240 ~ 80233361 (-)
G445197 NA other downstream 1403238 80176762 ~ 80177080 (-)
G445115 NA other downstream 1592614 79982461 ~ 79987704 (-)
G444691 LOC106605670 other downstream 1848782 79730987 ~ 79731536 (-)
G446775 NA other upstream 354053 81943285 ~ 81943611 (-)
G447220 NA other upstream 801423 82390655 ~ 82391224 (-)
G447993 NA other upstream 1728281 83315161 ~ 83319715 (-)
G448079 NA other upstream 1921121 83510353 ~ 83520273 (-)
G448411 NA other upstream 2282370 83871602 ~ 83873308 (-)

Expression


Co-expression Network