LOC110524664 (LOC106560367)


Basic Information

Item Value
gene id LOC110524664
gene name LOC106560367
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 81634363 ~ 81637591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604511.2
AGTAAGCTACTCACAAATGTACTTTCCATTGAAACAACCAAGTTGGACAAGACGGGGTTCGAGCCGAaccaaaggagaaaaaaaaacattgagttTCATGACGTGAAAGTGAACCGTTTGCTCCAGAATCTTCTCTGAGATATCGTGCACTGTAATGGCATCTCCTACTGCTTCTGATATGTTCATTTTGAATAGCTGTTTGTAGGAAGACAAGTAGCTACGACTAAACGAGACGATTCATTTTAATTTGTTCAACCTACTCATGTGCGCCCGTAAATCAAGTCACTTCCTGGTTTCTGGAACGCCTAAGCACATGCACGTGATTCTGAACATCATGAGAAACATGATTGGCTAGCTGTGTATTGTTCCCGCCTTTGCTTGAATGTCATTCGGTCCTCAAAGTGTCAACATCTTTTCGAAGCCGGAAATCTTTGCAAGCTCGGAACTTCGGCATGAAAAATGCTAAGGTGGTTAGAAGTTGACGAGTATCTTTAGGTTTAATTTAAGTTGTTAAAGCGTTAATATTTCCTCAAAATGTCCAAAATACAGCTGTTGAATCTGTTTATCACCGAACGGTTAACAACGGCAGCTGTTGAGCTATTTGGAGAAAATAAAACCGAGTACCATGACCGATTAAAATCAGCGGCAGTTGATATATTCAGGATAGTGGAAAAGACGATAATAGAGTACTTGGAAGAGATATCCAGCTCAAAGCAGGAGAATGGTCGTCTGCGGAGGATTCTTCTGGATTTGGGAGCAGACCCCCAGCAGCTAACTCGGGAGATTCCACCtaagcagcagcaacaacaaccacactgtgaGCAGGAGTGGAGCCCCAGTCGGGTGCAGGAGGAGACAGAGCACACATTGATTACAGAGCAACAGGAGGAACTCAAGGCCAGTCAGGATACCACAGAGGTCACACAGTTTATATTTCCTCCTCCATATGTGGAACGTGACTGTGATCAGGACAGTGAAAGGGACCCTCTACCCACCAACACCACTGTCGGAATCAAAACAGAACCTGATGATGGAGAGGACTACGGAGTATCAGAACCAATCATTGACTCTCAGCCCCTCTCTGAACTTGGTCTACATCCAGATTCTAAAGTCTGCACTGAGGCCAAGATAACCAGTGAGCTGAAAGCACCGTTGAGGGCTCACACAGAGAAGCGGTTACACATGTGTACTGTGTGCAGGAAAAGCTTCACCAGGGCAGGCCAGTTAAAAATACATCAGAGAATTATTCACATTGGTGAGAAACCATACAGCTGTACTGAATGTGGCAAATCATTCAACCACAAGGAAATCCTGGACAGGCATATAAACACTCACACAGGAGTGACACCATACAAATGCCCTGTGTGCAGTCAATGCTTCATTAGCAGAAGCCATTTAGGAAATCACCGGAAAATTCATCAGAAAGATGAAAAGCCATATAAGTGCAAAGAATGCTCCAGGTCCTTCAAAGGCAAGGGAGCTCTGGTCAGGCATATGAAGACTCACAATGGAGAGAAACCTTATCAATGTTTTGAGTGTGACAAAGGCTTCACACGTCAGGGACACCTGACAGAGCATATGAGATCCCATACAGGAGGGGAGAGCCTATTTAAATGTCCTGTGTGTGAGAAATCCTGTATATCAGCCGTGGTTCTAAAACGCCATCAGCTAATTCACACCGGAGTGAAACCATGCAGCTGCCAGGAGTGCGGAAAAAGCTACAGTCTGAAGGCAACACTAAAAGAGCATATGAGGAGCCACACAGGGCAACGACTTCAGTGTCCTATGTGTGAAAAATGTTTCACATTTAAAGCAGGTCTAAGACAACACCTAAAAACTCACAATAGAGAGACACCATACATGTGCAGCGATTGCAGTCAAAGTTTCAGCCGTAAATCGGACTTGATCGGGCATATGCGCACTCATACAGGAGAGAGATTATTCCGGTGCCTTCTATGTGAGAAATGCTTTATATCAGACTGTGATTTAAAACGCCACCAGCGGATCCACACTGGTGAGAAACCATACAGCTGCAAGGAATGCGACAAAAGCTTCACTCTTAAGGGAGGTCTGAAAACGCACATGAAGATACACACAACACGGAAACCCTACTGCTGCAATGAATGTGGCAAATGCTTCCTCCACAATACTAGACTGACAGACCACATGAGGAGCCACACAGGGGAGCAGCCGTACAAGTGTGATGTCTGCGGGAAATGCTTTGTCTATTCAAGCGATTTGAAAAAGCATGAGAGAATTCACACAGGTGAGGAACCATACAGGTGTGTTGAATGTAACAAATGCTTCAACTACGAGGGTAATTTGCTAAGCCATATGAGGGTACAcacaggggagacaggagaggaaggagaggagcctCCAGCGTATCTCTGCAGCGATTGCGGCAAAAGCTTCCATCAGATGCGAAACCTTAAGCAGCATATGAAGAGTCACAAACAGAAGGCAATGCTGCAGTGCACTATGTGTGAAAAAGCTTTTCCAAAAGAAAGCCAACTCAAACTCCACGAGagaattcacactggagagaaaccgtaCCTGTGTAACACTTGTGGGAAAAGCTTTAGCAGGAAGGAACACCTGAATGGTCACATGAGGACTCATTCAGGGGAGAAACCATACATGTGTCCTTCGTGTGGTAAATGCTTTTTATCAACAAGCGATCTTAAACGCCATCAGAGAATTCACACTGGCGAGAAACCGTTTCGCTGTAACTATTGCGATAAATGCTTCAATCAGATGAGTTCCCTGAAATCACACATGAATAACATTCACAAGAGGGAGAGCATGTAGTTCTCGGTCAGGTGTAAAATGTGT

Function

NR:

description
oocyte zinc finger protein XlCOF6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604511.2 True 2835 mRNA 0.45 2 81634363 81637591

Neighbor

gene id symbol gene type direction distance location
LOC110524663 LOC106560370 coding downstream 45131 81580318 ~ 81589232 (-)
LOC110524661 LOC106560372 coding downstream 355170 81277266 ~ 81279193 (-)
LOC110524660 LOC106560371 coding downstream 363307 81265457 ~ 81271056 (-)
LOC110524659 LOC106560369 coding downstream 394179 81237982 ~ 81240184 (-)
serpinb1 ileu coding downstream 772998 80839898 ~ 80861365 (-)
LOC110524665 slc22a23 coding upstream 1871 81639462 ~ 81767595 (-)
LOC110524669 LOC106584070 coding upstream 205928 81843519 ~ 81889913 (-)
igfbp3 igfbp-3a1 coding upstream 637496 82275087 ~ 82346684 (-)
si:ch211-191a24.3 LOC106560396 coding upstream 795624 82433215 ~ 82536323 (-)
si:ch211-191a24.4 LOC106560402 coding upstream 963869 82601460 ~ 82605684 (-)
G446595 NA non-coding downstream 87091 81545988 ~ 81547272 (-)
G446555 NA non-coding downstream 219412 81414557 ~ 81414951 (-)
G446556 NA non-coding downstream 224741 81408942 ~ 81409622 (-)
G446129 NA non-coding downstream 281785 81352334 ~ 81352578 (-)
G446128 NA non-coding downstream 283069 81350940 ~ 81351294 (-)
G446662 NA non-coding upstream 50582 81688173 ~ 81688684 (-)
G446664 NA non-coding upstream 64064 81701655 ~ 81701869 (-)
G446666 NA non-coding upstream 83424 81721015 ~ 81722008 (-)
G446673 NA non-coding upstream 106889 81744480 ~ 81744716 (-)
G446676 NA non-coding upstream 112791 81750382 ~ 81751286 (-)
G445220 NA other downstream 1372858 80245943 ~ 80261505 (-)
LOC118964653 LOC106581256 other downstream 1408162 80223240 ~ 80233361 (-)
G445197 NA other downstream 1457283 80176762 ~ 80177080 (-)
G445115 NA other downstream 1646659 79982461 ~ 79987704 (-)
G444691 LOC106605670 other downstream 1902827 79730987 ~ 79731536 (-)
G446775 NA other upstream 305694 81943285 ~ 81943611 (-)
G447220 NA other upstream 753064 82390655 ~ 82391224 (-)
G447993 NA other upstream 1679922 83315161 ~ 83319715 (-)
G448079 NA other upstream 1872762 83510353 ~ 83520273 (-)
G448411 NA other upstream 2234011 83871602 ~ 83873308 (-)

Expression


Co-expression Network