LOC118964728 (LOC106560395)


Basic Information

Item Value
gene id LOC118964728
gene name LOC106560395
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 82139830 ~ 82141500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979071.1
TTCCAGGGTGTCTCACCATTCAGATCCGAACAGCGCTCTGTGTGTTTCTAGTCCTGTTGACCTACTCTGTCACCCAAGCATGTGTGGTGAGCTGTTTACCCTGGGTCTGGATTATGGGAGGTAACTCTAGTAGCAGCTCCGTGGAGACTGTTTCCATGGACACACCGAGCGAGCCAGGGCCAATGAACAGTACGGTAGCGGAGGGGGTGTGTCCGAACGTTTCCTACGCTCTCCTCTCCTGCGTGGCCGGAACTCTCACCGTCATCCCTTACCTCCGCGTCTCCTCGCTACCTAAGATACTCCTGCTCTTCCTTCTCTCGGTCCTTTACACCGTTGCCATGGAGACCAGCGGGTACCGCATCGCCGTGGGgggaGGTTTGCTCCACCCTCGGCGGTATGATCCAGTGCTGGGTCTCCTGTTGTTTACTGTAGCTCTGGCTCTACACTGTAGACAACTGGACCTCAAACTACGCCTAGACTACCTGTGGGCCACTcaggcagaggaggagagaggcgacATGGAGAAGGTGAAGTTGGACAACAAGAGGATCTTGTTCAATCTCCTACCTGCACACGTTGCGCAGCACTTCCTCATGTCCAACCCCCGCAACATGGTGAGTCTCACCcccgttcccctctctccctgtctccctgcatcTCGTCCCCCTATtcccccgtcccccgtccccctTATGCCTTGTCCCCCCGTTCCCCCGCACCTCATTCCCCTGTTCCCCCTACGCCTCGTCCCACTGTTCCGCCTGCCCCACCTGTGCCTTGTCCCCCAGTTCCCCCTGTGCTTCGTCCCCCTGTCCCTGCCATTCCCTGCTGGATCATCTCCCGTTTGGGTAGTGGTGCATTTGAGTAGCTGGCTGGTGTGA

Function

NR:

description
PREDICTED: adenylate cyclase type 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979071.1 True 881 mRNA 0.58 4 82139830 82141500
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110523017 LOC105011947 coding upstream 9319 81932984 ~ 82130511 (+)
LOC110523016 LOC106560408 coding upstream 219324 81892826 ~ 81920506 (+)
LOC110524668 LOC106560365 coding upstream 314134 81781102 ~ 81825696 (+)
bphl bphl coding upstream 505651 81625006 ~ 81634179 (+)
LOC110524662 exoc2 coding upstream 564435 81417392 ~ 81575395 (+)
LOC118936420 LOC106560395 coding downstream 284 82141784 ~ 82149709 (+)
igfbp1a LOC101268901 coding downstream 76972 82218472 ~ 82220496 (+)
LOC110523018 LOC106560398 coding downstream 400037 82541537 ~ 82600595 (+)
c5h8orf82 cssa10h8orf82 coding downstream 464656 82606156 ~ 82629774 (+)
naprt naprt coding downstream 491033 82632533 ~ 82660203 (+)
G446473 NA non-coding upstream 52559 82087051 ~ 82087271 (+)
G446471 NA non-coding upstream 54780 82084482 ~ 82085050 (+)
G446470 NA non-coding upstream 55933 82083647 ~ 82083897 (+)
G446469 NA non-coding upstream 59481 82080075 ~ 82080349 (+)
G446468 NA non-coding upstream 61770 82077590 ~ 82078060 (+)
G446513 NA non-coding downstream 15312 82156812 ~ 82158416 (+)
G446514 NA non-coding downstream 17197 82158697 ~ 82160896 (+)
G446515 NA non-coding downstream 22404 82163904 ~ 82165461 (+)
G446535 NA non-coding downstream 48775 82190275 ~ 82190584 (+)
G446549 NA non-coding downstream 70162 82211662 ~ 82211876 (+)
G446381 NA other upstream 242049 81895804 ~ 81897781 (+)
G445211 NA other upstream 1904402 80234880 ~ 80235428 (+)
G445204 NA other upstream 1922740 80216478 ~ 80217090 (+)
LOC110524622 LOC106560333 other upstream 3881374 78245839 ~ 78288092 (+)
G442273 NA other upstream 4556603 77558330 ~ 77583227 (+)
G447001 NA other downstream 282698 82424198 ~ 82442223 (+)
G447020 NA other downstream 311106 82452606 ~ 82458383 (+)
LOC110524684 NA other downstream 1647518 83788574 ~ 83794357 (+)
G448698 NA other downstream 2160600 84302100 ~ 84302473 (+)
LOC118964674 NA other downstream 2246593 84386803 ~ 84389601 (+)

Expression

LOC118964728(LOC106560395) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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LOC118964728(LOC106560395) Expression in each Bioproject

Bar chart with 11 bars.
LOC118964728(LOC106560395) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network