si:ch211-191a24.4 (LOC106560402)


Basic Information

Item Value
gene id si:ch211-191a24.4
gene name LOC106560402
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 82601460 ~ 82605684 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978557.1
GGTCACCTGAACAACAAGGTAGGACATATTTCTTGGGTGAGCGAACTGTGATCTCCacaaaaatgtttacattttcgGATTCATAGTTCACCAAACGGAATCACCTCAACTGCCAGTCGGGGTGGTATGGCGCGTTTATGACACATTGGGTGTTTTTCCGTGCAGTTATGAGCCAGCCGCACAGAGGGCAAAGGGGGAGAAACGGTGGTCTCCACGAGCATCGGGAACACAGGCCACGACGTGAGCTGCAGCACAATGCTAGACAACCATCAAGCGACAGgtcCTCTTCTCAGCCTCCATATTACAGGGACTCCACACCCCCGCTTAAACATGTGCGGCACCAAGAAGCCCCAGGAGAGGATCATAATGGGTCCAAATGCACCAATATCTGCTCTAGGAGAGGTATCGTGTTGATCTGTTCAGTCCTGACCAATGCCCTGGTCCTGATCTGTGTGGTGGCAGCTCAGATGGTGATGTCAGGCATGTCTGCTATGGGTGGCCTGGCGGGAGGCAGCTTCAACCTTAACACTAACATCCCCTTCGAGGGCCAAGAGCTGCAACAGGTGAGAGACCTGGACATGCAGTACAGCCAGATGAGAGCTCCGGGAATCTACGGGGGCGTGGCATTTGCCCTAGTCTTCGGTGTTGTCTCCCTCTTGTTCGTGGTCTCCGGGAACAAGCCCGCTCACCTGCTGGGCCAGAAGCTGCTGATGGGAGCATTGGTGTTCCAGGGTTTGGGAGCAGTACTCTacgtggtggcggtggggttgtaCCTCCACTTTGTCATCCAGGTAAACAGTACAGACGTGTGTAAGAGAAGGGAGAGGCTGTACGCACGTTCAGGTTTAACCTGGATGAACTGTGATGTGGGAGGGGCAGACGCGGCCGTGGCTTTGTTTGGGCTGATCACTGCGATACTCTACACTGCCGGTACGGTGCTTACGTTCCACACGGTGCGCTGGGTCAGGGGCTACCTGAAGGATCGCAGGCTACACGAGGAGAGGGATAGACGCCCCCCTACTGCCAGCTCCCACCCCCATAGGGCACCACTACGGTCTGATACCGCTCTGTGACGGCGACGCAGGTtgagccccaaatggcaccctattctctatagagtgcactacttttgatagggctctggtcacaatAAATAGATTGTAGGAAATCGGGTGCCATTTCGGACGACACCACAGATGAAACCCGGAAGGGACCAAAGTGCTTTTTCACTCGATCCCTTTTCATTAAAACTGTCTGTCCATTTTTGACAGTAATGGGACTTGCAACTACCCACTGGGCAAagatgtcagttcaacatctagttttgatttactttTGAGTTGTCAACAGTTAAATCAACAAAAATGTGAACCATTTAGTTTTAAAGTAGGGTGGAAAAAAGACATCTCCctaactttttgcaaatccagtAAGTTTGATGTTGATTCCAATATCATCACCTTGAATgttttgttgaaatgacatggaaaaacaatgttgattcacccagtttgtgcccagtgggtaagaCATTTGCTCTGTAAACTTCTGTAAAGCATGGATTTGATATTAATTCCTTTTTAACTGCAACATGAATGACCCACTGATCTCACAGACTGGTCTTGTTATTCATCAATAACacttttgtatgtgtgtgtatatatagaggtTGCATGTTAATAAACCTTTACATTTATCTGCTA
>XM_021604526.2
TTTACTTCTTCTCTGGTGGGTGGAGTCGGTCACCTGAACAACAAGGTAGGACATATTTCTTGGGTGAGCGAACTGTGATCTCCacaaaaatgtttacattttcgGATTCATAGTTCACCAAACGGAATCACCTCAACTGCCATTATGAGCCAGCCGCACAGAGGGCAAAGGGGGAGAAACGGTGGTCTCCACGAGCATCGGGAACACAGGCCACGACGTGAGCTGCAGCACAATGCTAGACAACCATCAAGCGACAGgtcCTCTTCTCAGCCTCCATATTACAGGGACTCCACACCCCCGCTTAAACATGTGCGGCACCAAGAAGCCCCAGGAGAGGATCATAATGGGTCCAAATGCACCAATATCTGCTCTAGGAGAGGTATCGTGTTGATCTGTTCAGTCCTGACCAATGCCCTGGTCCTGATCTGTGTGGTGGCAGCTCAGATGGTGATGTCAGGCATGTCTGCTATGGGTGGCCTGGCGGGAGGCAGCTTCAACCTTAACACTAACATCCCCTTCGAGGGCCAAGAGCTGCAACAGGTGAGAGACCTGGACATGCAGTACAGCCAGATGAGAGCTCCGGGAATCTACGGGGGCGTGGCATTTGCCCTAGTCTTCGGTGTTGTCTCCCTCTTGTTCGTGGTCTCCGGGAACAAGCCCGCTCACCTGCTGGGCCAGAAGCTGCTGATGGGAGCATTGGTGTTCCAGGGTTTGGGAGCAGTACTCTacgtggtggcggtggggttgtaCCTCCACTTTGTCATCCAGGTAAACAGTACAGACGTGTGTAAGAGAAGGGAGAGGCTGTACGCACGTTCAGGTTTAACCTGGATGAACTGTGATGTGGGAGGGGCAGACGCGGCCGTGGCTTTGTTTGGGCTGATCACTGCGATACTCTACACTGCCGGTACGGTGCTTACGTTCCACACGGTGCGCTGGGTCAGGGGCTACCTGAAGGATCGCAGGCTACACGAGGAGAGGGATAGACGCCCCCCTACTGCCAGCTCCCACCCCCATAGGGCACCACTACGGTCTGATACCGCTCTGTGACGGCGACGCAGGTtgagccccaaatggcaccctattctctatagagtgcactacttttgatagggctctggtcacaatAAATAGATTGTAGGAAATCGGGTGCCATTTCGGACGACACCACAGATGAAACCCGGAAGGGACCAAAGTGCTTTTTCACTCGATCCCTTTTCATTAAAACTGTCTGTCCATTTTTGACAGTAATGGGACTTGCAACTACCCACTGGGCAAagatgtcagttcaacatctagttttgatttactttTGAGTTGTCAACAGTTAAATCAACAAAAATGTGAACCATTTAGTTTTAAAGTAGGGTGGAAAAAAGACATCTCCctaactttttgcaaatccagtAAGTTTGATGTTGATTCCAATATCATCACCTTGAATgttttgttgaaatgacatggaaaaacaatgttgattcacccagtttgtgcccagtgggtaagaCATTTGCTCTGTAAACTTCTGTAAAGCATGGATTTGATATTAATTCCTTTTTAACTGCAACATGAATGACCCACTGATCTCACAGACTGGTCTTGTTATTCATCAATAACacttttgtatgtgtgtgtatatatagaggtTGCATGTTAATAAACCTTTACATTTATCTGCTA
>XM_036978558.1
AAACTCGGAAAAAAACGACTGAAAAATAGATTTGAACGGTCATCAATCTCGGAATTTCAACTCGGGCCACTTGCTGGAGCTCCGACTTTACAACCTGAagatcatgatttgacctcgttttttcccgagttcccagtagTTTTCAACGCGGCAAGAGTCCCCAAGGCTGTCATTGTCAACAACCATCATAAACACACTGCTGACGAGACGCCATTCTACTTTACTGTCTCCTCCATAGACATTAAAACTCTCATCATACAGTttcttctcctccacctgtcttATTCGAGCGAGAGGTTTCCGCCTTTACTTCTTCTCTGGTGGGTGGAGTCGGTCACCTGAACAACAAGTTATGAGCCAGCCGCACAGAGGGCAAAGGGGGAGAAACGGTGGTCTCCACGAGCATCGGGAACACAGGCCACGACGTGAGCTGCAGCACAATGCTAGACAACCATCAAGCGACAGgtcCTCTTCTCAGCCTCCATATTACAGGGACTCCACACCCCCGCTTAAACATGTGCGGCACCAAGAAGCCCCAGGAGAGGATCATAATGGGTCCAAATGCACCAATATCTGCTCTAGGAGAGGTATCGTGTTGATCTGTTCAGTCCTGACCAATGCCCTGGTCCTGATCTGTGTGGTGGCAGCTCAGATGGTGATGTCAGGCATGTCTGCTATGGGTGGCCTGGCGGGAGGCAGCTTCAACCTTAACACTAACATCCCCTTCGAGGGCCAAGAGCTGCAACAGGTGAGAGACCTGGACATGCAGTACAGCCAGATGAGAGCTCCGGGAATCTACGGGGGCGTGGCATTTGCCCTAGTCTTCGGTGTTGTCTCCCTCTTGTTCGTGGTCTCCGGGAACAAGCCCGCTCACCTGCTGGGCCAGAAGCTGCTGATGGGAGCATTGGTGTTCCAGGGTTTGGGAGCAGTACTCTacgtggtggcggtggggttgtaCCTCCACTTTGTCATCCAGGTAAACAGTACAGACGTGTGTAAGAGAAGGGAGAGGCTGTACGCACGTTCAGGTTTAACCTGGATGAACTGTGATGTGGGAGGGGCAGACGCGGCCGTGGCTTTGTTTGGGCTGATCACTGCGATACTCTACACTGCCGGTACGGTGCTTACGTTCCACACGGTGCGCTGGGTCAGGGGCTACCTGAAGGATCGCAGGCTACACGAGGAGAGGGATAGACGCCCCCCTACTGCCAGCTCCCACCCCCATAGGGCACCACTACGGTCTGATACCGCTCTGTGACGGCGACGCAGGTtgagccccaaatggcaccctattctctatagagtgcactacttttgatagggctctggtcacaatAAATAGATTGTAGGAAATCGGGTGCCATTTCGGACGACACCACAGATGAAACCCGGAAGGGACCAAAGTGCTTTTTCACTCGATCCCTTTTCATTAAAACTGTCTGTCCATTTTTGACAGTAATGGGACTTGCAACTACCCACTGGGCAAagatgtcagttcaacatctagttttgatttactttTGAGTTGTCAACAGTTAAATCAACAAAAATGTGAACCATTTAGTTTTAAAGTAGGGTGGAAAAAAGACATCTCCctaactttttgcaaatccagtAAGTTTGATGTTGATTCCAATATCATCACCTTGAATgttttgttgaaatgacatggaaaaacaatgttgattcacccagtttgtgcccagtgggtaagaCATTTGCTCTGTAAACTTCTGTAAAGCATGGATTTGATATTAATTCCTTTTTAACTGCAACATGAATGACCCACTGATCTCACAGACTGGTCTTGTTATTCATCAATAACacttttgtatgtgtgtgtatatatagaggtTGCATGTTAATAAACCTTTACATTTATCTGCTA

Function

NR:

description
PREDICTED: MARVEL domain-containing protein 3-like isoform X1

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978557.1 False 1703 mRNA 0.49 5 82601460 82605352
XM_021604526.2 False 1680 mRNA 0.49 5 82601460 82605379
XM_036978558.1 True 1888 mRNA 0.49 5 82601460 82605684

Neighbor

gene id symbol gene type direction distance location
si:ch211-191a24.3 LOC106560396 coding downstream 65137 82433215 ~ 82536323 (-)
igfbp3 igfbp-3a1 coding downstream 254776 82275087 ~ 82346684 (-)
LOC110524669 LOC106584070 coding downstream 711547 81843519 ~ 81889913 (-)
LOC110524665 slc22a23 coding downstream 833865 81639462 ~ 81767595 (-)
LOC110524664 LOC106560367 coding downstream 963869 81634363 ~ 81637591 (-)
LOC110524677 mafa coding upstream 361300 82966984 ~ 82974589 (-)
LOC110524678 LOC106560415 coding upstream 375765 82981449 ~ 83097063 (-)
adcyap1r1b adcyap1r1 coding upstream 635523 83241207 ~ 83306242 (-)
LOC110524681 LOC106560421 coding upstream 979052 83584736 ~ 83599722 (-)
LOC110524682 LOC106560471 coding upstream 1029623 83635307 ~ 83661963 (-)
G447310 NA non-coding downstream 17309 82578013 ~ 82584151 (-)
G447294 NA non-coding downstream 42259 82558317 ~ 82559201 (-)
G447261 NA non-coding downstream 98902 82500216 ~ 82502558 (-)
G447234 NA non-coding downstream 188660 82412593 ~ 82412800 (-)
G447232 NA non-coding downstream 190364 82410806 ~ 82411096 (-)
G447344 NA non-coding upstream 50680 82656364 ~ 82657449 (-)
G447363 NA non-coding upstream 90204 82695888 ~ 82699651 (-)
G447371 NA non-coding upstream 103430 82709114 ~ 82710270 (-)
G447388 NA non-coding upstream 137827 82743511 ~ 82743859 (-)
G447418 NA non-coding upstream 166135 82771819 ~ 82775310 (-)
G447220 NA other downstream 210236 82390655 ~ 82391224 (-)
G446775 NA other downstream 657849 81943285 ~ 81943611 (-)
G445220 NA other downstream 2339955 80245943 ~ 80261505 (-)
LOC118964653 LOC106581256 other downstream 2375259 80223240 ~ 80233361 (-)
G445197 NA other downstream 2424380 80176762 ~ 80177080 (-)
G447993 NA other upstream 711829 83315161 ~ 83319715 (-)
G448079 NA other upstream 904669 83510353 ~ 83520273 (-)
G448411 NA other upstream 1265918 83871602 ~ 83873308 (-)
G448452 NA other upstream 1310452 83916136 ~ 83916641 (-)
G450676 NA other upstream 2737104 85342788 ~ 85343072 (-)

Expression


Co-expression Network