rhpn1 (rhpn1)


Basic Information

Item Value
gene id rhpn1
gene name rhpn1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 82747333 ~ 82775237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604533.2
GCCACGAGTTATTTCGTTTGTATTGTGTGAGAGAGTTGCGCGAATGCAAATTGTAAAAATAAGACCGTGATTGTTTTGTTACGGGTCTTTCCTTTGTTGATTTGCTCTATTTCCATCCACCACAACAGACCCTTGCCTGCAAATATTGGTGCAACAAGTTGCATAGCGTCCTGGCTTGATGATGGGAGAAGAACCTGCGACGAGAGAGCCAGAGATGTCTGACGCTGGCTCAGACGAGGAGTTGGCGCTTCCCGCacggatggaggaggggagtcaCAGCGGGAGTATCAGAAAGGGTTGTGATCCGTGCTCCCAGACCCAGCGCAGTAAGCTGCAGCATCGTAGAGCTCGTATCAACCAGCAGATCAACAAGGAGATGAGGATGAGGGCTGGGGCTGAAAACCTCTTCAGAGCCACCACTAACAACAAGGTAAAGGAGACTGTGGCTCTAGAGCTGAGCTTTGTCAACTCTAACCTGCAGCTACTGAAGGAAGAGCTAGAGGAACTCAACAGCAATATGGAGGTCTACCAGACCGAGAGTGAAGCCATCAATGTTCCCATGATCCCACTGGGTCTGAAGGAGACCAAGGAAGTGGACCTCACTGTCCCTCTCAAGGACGTTATCTGTGAGCATTATGGAGAGGACAGCTCTTTGTTTGAGAAGGAGATCAAGGAGTTTATGGAGCTCAGACAGGCCATGCGTACCCCCAGTCGTAATGAAGCCGGTTTGGAGCTTCTGATGGAGTATTATAACCAACTATACTACCTGGACCAGAGGTTCTTCCCCCCACACAGAACACTAGGAGTCCACTTCCACTGGTATGACTCTCTAACAGGTGTGCCGTCGTGCCAGCGTGCGTTGGCGTTTGAGAAGGGCAGTGTGCTGTTCAACGTGGGGGCTCTCTACACACAGATAGGAGCCAGACAGGACCGCTCTGCTACAGCTGGCATAGACTGTGCTATAGACGCCTTCCAGAGAGCTGCAGGTGCATTTAACTACCTGAAGGAGAACTTCTCCAACGCTCCCAGTCTGGATATGAGTGGCCCGTCACTATGCATGCTGGTCCGCCTGATGATTGCCCAGGTGCAGGAGTGTGTGTTCGAAAGAGTCACACTCACAACTCCGGACACGCACTTCATCACCCAGCTACAAGTGGCAAAGGAGGCCGCACGGGTATCTGATGTGTATAGCTTGGTGCTCCAGACCATGTCTCAGACCCTTGTGAAGGACTATGTCCCGTTCTCCTGGGCCTCCATGGTTCAAGTGAAAGCCGAACACTTTAGAGCCCTCTCCCACTACAATGCTGCTGTTGCTCTCTGTGACCACACCCagtccattgaggaAGGGAGTGACGAAGAGTCGGCGAAGGCTCTCTTCCAGTTCCATGTCAGTAGTCCTGCTGGACCCCCACTCAGCCAGGTGCTCAGAGACCCTGAGGACAGACGCAAACTGGGGAAGGCCCACCTGCGTTGTGCAGTGATCAGACATGAGGAGGCTATGAGAGTACATGGTCTATGTAAGATCCTGAGGAAGATGGATATTCTACAGGAGGTGCTCTCTTTCATGTACAAACGGTCCCTGGACAAATACTCTGAGATGGACCGAGAGGATGACTTTGATGAGACCGCAGAGGCCCCCGAGATACActCTCAAACCCAGCACAAACCAGACATCACACCACCCAACTTCTCCACTGTCCCAGTCACTGACATCTTCCAAAGGCTGGGTCCCCTGTCAGTGTTCTGTGCGAGGGCACGATGGGGACCGGTGCGTGTGGTGAGTCTCCAGCGAGGGGACGGGGGTTTGGGGCTGACTCTTAGAGGAGACTCTCCTGTCCTTGTGGCTGGGGTGGTGCCGGGGGGATGTGCCCAGGAGGCAGGTTTGAGGGAGGGGGACTATATAGTGGCGGTGGATGGAGAGGACTTTAAGTGGGCTAAACATGGAGAGGTGGTCCACGTCCTGAAGAGCTGCAGCGACAGAGGAATACAACTCAGCAtcatcacactgcacacacacgATACACAGgtggaTAGGAGGCAAGTGATGCTCTCCCCCAGTGGAGACGAAGCGAACGCTCTGCAACGGACCATGGGCAGGGCTAAGGGGCAGCGCACCGCCCCCTTACTCAACTGGAACAGGAAGAAGACTGGGGGAGGAGGCAGAGCCACCAAGAGACTGGGCAGCACCTTCAGTCTTCCGTTTGGAAACCTTCGGGACTGTGAGTCCATGTACTGAGGGCACAGCAGACATGTTAGTCTATTCCATACAGTGCACTACCAgccaatagtagtgcactagagaatagggtgccatttcagacagcgCCATAGATAGACAAACCACTCAGGGAATGACAGGTGGACATGTTACAATACAAGGATGTTTTGTAAATGACTGGATATTAAATGTGTTATTGCAGCAGGGCAAGGAGCGGAAGAGGAGGTTCGTAGGAAAGGATGCTTGGTCCAGATTACAGCAGTTTCAACTGCAGAGAAACAACAGTTTTAGAAAGCAGGTGACTGCATGAATCTGTCGCTGAGGGAGTTAAGACATGGAAATCCTGTCCCAAAATGGGCTAAATGTTGGGGCTCAGTGTTGTTGTCGCTTACTATTATAGAGATGGAAGAAGACTTCATGTCAAACTACAGCCGCTGATCCAAAGACCACATGTCTTAATCAGTGAAAATATAGTATAAACACTGATCGCCTTTCGTGGGGAATAATAATGCTTCGtatactttcaatgcatttttttCTGCAAAAGCTGGGTAAATGCTCCCATAAACAAAAGCTGGGTAAATGCTCCCATAAACAAAAGCTGGGTAAATGCTCCCATAAACAAAAGCTGGGTAAATGCTCCCATAAACAAAAGCTGGGTAAATGCTCCCATAAACAAAAGCTGGGTAAATGCTCCCATAAACAAAAGCTGGGTAAATGCTCCCATAAACAAAAGGTGCACAAACAACTTTTACATTTTTtgcatttaccctccactacaccactggtcttaatgttaaaaacatgttttactgtATCCCAGAGTCCTGCTTTCCCACTCCAGTTCTAACAAGGTCACTCAACTCTCAACAGTAAAAACAAGGACATCCATTCAGGACCTGGGTTGAGCCCTCCACTTCCTCAAGTTAGAGCATTGTGCAGCAGAGAATGTATAGCTGTAGCCATAGCACTGCATTCCATTCTCCTACCAGTTTTCTAGAGTTGTTGACGTAAAGTCTTTTGTTTCTGTTTGATAGTCGAGTACAAATGACTACCTTCAAAGTACATCAATGGttctacactgagtggacaaaacattagaaacccctgctttttccatgagactgaccaggtgaatccaggtgacagctgtgatcacctgttaaatccacttcaatcagtgtagatgagctgaggagactggttaaaggacttttaagccttgacaattcacatggaTTGTGCTTGTGTGCCatttcagagggtgaacgggcaaaacaaaagattttaagtgcctttgaatggggtatggtagtaggtaccaggcgcaccggtttgagtgtgtcaagaaccactatagctgctgggtttttcacgctcaacagtttcccgtgtgtatcaagaatggtccaccagccaacttgacacaactgtgggaagcatcggaGTCACCAGGCCAGCCTCCAGccacactttcaacaccttgtagagtccatgctccagcgaattgaggctattctgagggcaaaagggggtgcaactcaatattttgaaggtgttcctaatgtttgttttttttactcagTGTGTGTATTAGTTTTTCTACTCATGTTTTGTACCACATTCTTATGCACTGTGACTTCATAGGTGCAGAAAAACGAATATGGTGTAATTGCAGACCACAATTTGGGATGTTTCTTAATATGGGTGTTCCCTGCTATCAGGAAATGCACATTGATACCTGCCATTGGTCAGTTCCGGTGTTATGAGACTGATGGTTTCTCGACACATTATTtgtttacatagcaggttaggtgGATTAGTGAGCCATGTTTGGAGACtgaggttaggaaaagggttaggccACAGAAATGACCATGGATCAATGGGTGTAACTTTTTCTatcaagaaatatatatatattggaaaATGCCCCTAATGGTGTTCTGCAATTGCtctacatacaggtaactgccaaaaataAAGGCAACACCAACATTAACTGTCTTAATAGGCTGTTGGGCTACCACGAGACGCCAGatcagcttcaatgcaccttggcatagattttacaagtgtctggaactctattggaggaatgCAGCACTAATCTTCCTCCAAATATTCCATTTGGTATTTTGTAGATGGTGGTgtaaaacactgtctcaggctcTGCTCTAGAATATCCCATGTGTTCAATTTAGTTGacatctggtgactgagatggccatggcaaatggattacatcattttcatgttcatcaaaccattcagtgatgacttgtgcatgggggcattgtcatcctattgGGGCAAagacatggtagccaaaataaggGCCAGCCTAGCATTTTATACATGACCCAAGtcatgatgggatgttaaatgcTTAACTCTGGAACCACacttgtgtggaagcacctgctttcaatatactacTGTGTAtgcctcatttactcaagtgttgcCATTATTtgggcagttacctgtatcttgTGACGCTGAAATGGTTTACGTGGTACATTAGGGGATATACGAACTTAGTTGTCCTACTACTGCTTAGACCAACACAGCacacacattttagaataataatgTGTTGTTTTTATAAAGACTTGTTTGTATATGTCTGTGACTAAGTAGTTGAAGATGAGAATGGTCCGTCTACCAAGTAGAAACCACCTATCAAGCTAACTTAGCAGCATAGAGGAAAGCTGATGCTACATTTAGCAaggccactttttttttttacattttcaacaTTTGGATACCCAAATAGTATTTTGAAATTCCAATATATTTAATGTTATTTTCATCTCAATTATGAATTTTAGATGTGTGTTTCTGATTTGTGAAATCTGTCTACCGTGGTGTTTTTGGTTGTATATTTCTGTGAATATTTTAATGTTTTGTTAATTAAGGGATTTGTACTGCTTTCTTTTGTTTGAGAACCTGAAAATCATGGCTGGCTGCTCAtataatcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgacttGCAGACTTTTCTCAATTAATTAAAGGAGTGGATCACTGATTTGTCTCCATTGATGGTAACAGCTTCTCAGGGTTGTCATGTTCAGTTACATAATTGTAGGTCTGTGGTAACCAGCAGGTGTCACTATAACCCTGGTTATTGTATCAGATATTGGCAGATATGTTTGagtcttttcaaatcaaatt

Function

symbol description
rhpn1 Predicted to act upstream of or within signal transduction. Orthologous to human RHPN1 (rhophilin Rho GTPase binding protein 1).

NR:

description
rhophilin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604533.2 True 5445 mRNA 0.46 16 82747333 82775237

Neighbor

gene id symbol gene type direction distance location
LOC110523019 LOC106560399 coding upstream 7867 82667195 ~ 82739466 (+)
naprt naprt coding upstream 87130 82632533 ~ 82660203 (+)
c5h8orf82 cssa10h8orf82 coding upstream 117559 82606156 ~ 82629774 (+)
LOC110523018 LOC106560398 coding upstream 146738 82541537 ~ 82600595 (+)
igfbp1a LOC101268901 coding upstream 526837 82218472 ~ 82220496 (+)
cyldl LOC106560416 coding downstream 321919 83097156 ~ 83127964 (+)
LOC110523020 LOC106560417 coding downstream 396264 83171501 ~ 83230553 (+)
LOC118964671 adcyap1r1 coding downstream 463622 83237159 ~ 83252545 (+)
LOC118964729 NA coding downstream 831498 83606735 ~ 83608575 (+)
LOC110523022 NA coding downstream 841199 83616436 ~ 83630276 (+)
G447128 NA non-coding upstream 4615 82741898 ~ 82742718 (+)
G447129 NA non-coding upstream 6899 82739757 ~ 82740434 (+)
G447155 NA non-coding upstream 40209 82706722 ~ 82707124 (+)
G447422 NA non-coding downstream 7636 82782873 ~ 82783208 (+)
G447433 NA non-coding downstream 14605 82789842 ~ 82790085 (+)
G447436 NA non-coding downstream 15322 82790559 ~ 82790762 (+)
G447447 NA non-coding downstream 28134 82803371 ~ 82803571 (+)
G447463 NA non-coding downstream 41981 82817218 ~ 82817661 (+)
G447020 NA other upstream 288950 82452606 ~ 82458383 (+)
G447001 NA other upstream 305110 82424198 ~ 82442223 (+)
G446381 NA other upstream 849552 81895804 ~ 81897781 (+)
G445211 NA other upstream 2511905 80234880 ~ 80235428 (+)
G445204 NA other upstream 2530243 80216478 ~ 80217090 (+)
LOC110524684 NA other downstream 1013781 83788574 ~ 83794357 (+)
G448698 NA other downstream 1526863 84302100 ~ 84302473 (+)
LOC118964674 NA other downstream 1612856 84386803 ~ 84389601 (+)
G449774 NA other downstream 2553335 85328572 ~ 85328942 (+)
G449809 NA other downstream 2670727 85445964 ~ 85447575 (+)

Expression

rhpn1(rhpn1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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rhpn1(rhpn1) Expression in each Bioproject

Bar chart with 19 bars.
rhpn1(rhpn1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network