LOC110524678 (LOC106560415)



Basic Information


Item Value
gene id LOC110524678
gene name LOC106560415
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 82981449 ~ 83097063 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036978561.1
ATTCCAAGTTTGATGACCGTTCAAATCGAATTTCcccagtcggagctagttttttccgagttcccagttgttttgaacgcggcaataCACATATTCGTGGCGCTACATGATGACGATTTGAGCTTCGGACGTAAACATGGAGAGAGACGCGCTGAAAAGGCAAATCGATCTGTTGCAAAGTCTCATCAACAACCACAAGAGTGTCCATGGTGATGTCCCTTCTACTTCTGGCCGGCAGTGGCACCCAGCGAGGCCACCGCCACGAGGCAGGGGTCACAGCTCATCTTTCACCCCCACATTCCCCTCCCGGGGTGGGCCTTACCCCCCCCAGTCCGCGGAACACTGGAGGAAGACCTACTCCCTCAATAACAAGAGCAGCTCAGCCCAGCAAAGTAGACCTACTATACAGACTGCCAAGCACTCTTTAGAGCAGCCGTTAGTTTCTGCAGAACCCAACTCCTCTACTGGCTTGCTGTCCCTTAATGCTAGAGGCACCTCACAGCCCAGCCACAGCAATAAGGACCTGGCtagaggagagaaggatagaaCAAAATATGCTACGTCTGGGGATCTAACAGGGCCAAGGGGCCAACAGTATGCACTCACAGGGGGAGTGAGAAGAACTGTGACAGGCAGTGGAGCCACAGCTATAGAGTCAGAGACTGAATCAGGCATAGGGAGAACAGGACCTGGGGGTGATGCTTGGCTGGGACTCTCTGGGCTAACAGGGCCTGGACCTCCAGATGACCAGCAGAGAGAGACTAAATATGAGTTTCAGTCCACCACTGAAGAGAAGGGCATGGGACTGCCTGTGAAAGCCACTGCCCCTGGAGAAAATAATACAGAATTGACAAGTGTCCCTGTCTCAGACAaatctactgttactaccacCATGGTCCAGAGCACTGCTCAGCTGCATATCAGACCTCATCACTCTGAGAAAACCAGCACAGGAGGTAAACATACTGTCAATGCAACCACCGGCAACCTCATCCCTAGCGATACGGACCCACCTCTACTtctttcaccccctctctctgcctcccctagTGCCCTACAAGGACCCCAACTAAGCCCCATGTCCAATTCCACACCAGCCCAGCCCCAGACAACATCCTCTCCCCAGAGACACTCCAAGTTCACTTGGGTGAACAGCCATCAGCCAGGAGGAGCTGGGCCCAGCCAGGCCAGAACAGAGGCCCAGCCCCCAGACAAACTCATCACCTCTTCCCCCATCCCAGTCTCCCATCCTGGGCTCCCTAGTAGAAGAGCCTCTGCCCCCATCAAGAAGGTTCCCCGTAGGCTCAGTCTATCCATCGCAGTCCCTAAGACCACCAAGTACACCTGGGTGTCGTCTTCTGCAAGTGGCCAGGCCAGGCTGTCCCGGAAGCCCCTATCACCCAAAGCCCTGGCTCTGCCTCAGAGAGCTCcagagaagggaaagggggaaTCCAAGAAACCCAAATCCCCAAGTCTTTTAGCCAAGCAGCGCAAGGCAGCAGGTGCCTCCACCTCCCTCAGTAGTCTCTACCGCTGGAAGGCAGGGTCTGGAGGAGGGGGGCAGACTGGTACAGGAGGAGGGATAGGGGCCCGACGTGGGTCTGTGTTTCGTTGGACCTCGGAGAAAGAGAACGGGGCCAAGGGGGTGTCCAGTGTCCCTCTATCTGTAACTCAACGCATAATAGTGccgccctcctcctcccctggagGGTTCAAACTCAGGAGCAGGATGAAGATTATCAGGAGGCCGGCTAGCagTGAGTCTGGATCCGAGCGGAGGTCCAGCCCAGCAGACATGACCCTGAACAGCCGCTACTCTCTCCGCCGACGGACACACAGCCCGGTTCGGACACACACCCCGGTCTGGAGCCCGGGAGGTGTGAAGAGGACCATGTCCCGTGAACTGGTCTCGTTCGGCAGACACAAGCTACGACGTCTCTCCCCCAGCCCCTCCAGGACAGGTCCCGCCTCCCCGACCCTGCGTAGCCAGGTGATTCAGAGGGTGTTCAGGACCCGCTATAAGATAGAGACATGCCTGGGTGGAGACGAAGCACACACAGCCAACTATAGCCACACCCTCTCTTGGAGAGCAAAGAGGATCCAGGcggccaggAATGTACTCCAGAGCCGTCTGCGTCCCCCGGGACAGGACAGGCACCCCACAGCCCAGCactggagaggtagagggaggagcaTGCGCTGGATCGGTGGCACCCTCTACAGCGTCTCAGCCAATAAGCTGTCCCGCACCATGACAGCCAGTGCGCCAATCAACAGAACAATGAGATGGTCTAATCCACAGGAGATTTCCCCCACCTCGAGTACTTTCTTCCGGCCATCCAGCACACGTTTTGTGGCCAGTCGTGCGGTTCAGAGGAGTCTAGCCATCATCAGACATGCTCGTCAGAAGAAGACCCAGAAACAGTACTGCATGTACTTCAACCGCTTTGGAAAGTGTAACCGTGGCAACACCTGCCCCTATATCCATGATCCTGATAAGGTTGCCGTCTGtaccagGTTCGTGAGGGGTACATGTAAGCAGACGGATGGGACCTGTCCATTCTCGCACAAGGTGGCCAAGGAGAAGATGCCTGTGTGTTCGTACTTCCTGAAGGGTATATGTAACAACAGTAGCTGTCCCTACAGCCATGTATACGTGTCCTGCAAAGCTGCTGTGTGCCAGGACTTCATCAGGGGGTACTGCCCTCAGGGTCagaagTGTAAGAAGAAGCACACCCTGGTGTGTCCAGACTTCTCCAGTACTGGCTCCTGTCCCCAAGGGGCCCATTGTAAGCTCCAGCACCGTCAGAGGGCCAAACGCACCACTCCTAATGCCAGGGCAACTACAGGCCCCTCCGCCACCCCGGCCAAGAAGGCCCGTACCAAGAGgaccagcctgtcagtGCTTCTCCCTCAGGGTTCTGCTCAGGCAGATCCATCGACACCCTCGTCCTCAGGTCGTCACAACACCAAGCTGCCATCCTTCATCTCCCTTTCCAGCTCCCCAGAGGATGCAGATGCTCCCGACACGCCCCCCGCCGACACGTCAAAGGTCACAGAGAGAACACTGCAGCTCATGCCTCGACTCCAGAACTACAGGAGCTAGAATGGATTCTGCCTGAACATCACCAAATTAACTTTGAAAATACTACAGAGACGTATGTATTGAATGCTAATGGCAGCGCTGAGGTTTCTGACTCACATATATATCTCACCTCTACCATACTCAGGGTCTATAATGTCGTGCTCTTGTTAAAGTTGTTCTGTGGACTCATACATTTCATATAGCAATGATGTTTTTAATACAGATTTGATTGATATGTGAACATGTTTTGGTTCTTTGTAAATTGGAGATTGAATAATTTTGAATAAAACGAATGTTATTACTGTA
>XM_036978563.1
ATTCCAAGTTTGATGACCGTTCAAATCGAATTTCcccagtcggagctagttttttccgagttcccagttgttttgaacgcggcaataCACATATTCGTGGCGCTACATGATGACGATTTGAGCTTCGGACGTAAACATGGAGAGAGACGCGCTGAAAAGGCAAATCGATCTGTTGCAAAGTCTCATCAACAACCACAAGAGTGTCCATGGTGATGTCCCTTCTACTTCTGGCCGGCAGTGGCACCCAGCGAGGCCACCGCCACGAGGCAGGGGTCACAGCTCATCTTTCACCCCCACATTCCCCTCCCGGGGTGGGCCTTACCCCCCCCAGTCCGCGGAACACTGGAGGAAGACCTACTCCCTCAATAACAAGAGCAGCTCAGCCCAGCAAAGTAGACCTACTATACAGACTGCCAAGCACTCTTTAGAGCAGCCGTTAGTTTCTGCAGAACCCAACTCCTCTACTGGCTTGCTGTCCCTTAATGCTAGAGGCACCTCACAGCCCAGCCACAGCAATAAGGACCTGGCtagaggagagaaggatagaaCAAAATATGCTACGTCTGGGGATCTAACAGGGCCAAGGGGCCAACAGTATGCACTCACAGGGGGAGTGAGAAGAACTGTGACAGGCAGTGGAGCCACAGCTATAGAGTCAGAGACTGAATCAGGCATAGGGAGAACAGGACCTGGGGGTGATGCTTGGCTGGGACTCTCTGGGCTAACAGGGCCTGGACCTCCAGATGACCAGCAGAGAGAGACTAAATATGAGTTTCAGTCCACCACTGAAGAGAAGGGCATGGGACTGCCTGTGAAAGCCACTGCCCCTGGAGAAAATAATACAGAATTGACAAGTGTCCCTGTCTCAGACAaatctactgttactaccacCATGGTCCAGAGCACTGCTCAGCTGCATATCAGACCTCATCACTCTGAGAAAACCAGCACAGGAGGTAAACATACTGTCAATGCAACCACCGGCAACCTCATCCCTAGCGATACGGACCCACCTCTACTtctttcaccccctctctctgcctcccctagTGCCCTACAAGGACCCCAACTAAGCCCCATGTCCAATTCCACACCAGCCCAGCCCCAGACAACATCCTCTCCCCAGAGACACTCCAAGTTCACTTGGGTGAACAGCCATCAGCCAGGAGGAGCTGGGCCCAGCCAGGCCAGAACAGAGGCCCAGCCCCCAGACAAACTCATCACCTCTTCCCCCATCCCAGTCTCCCATCCTGGGCTCCCTAGTAGAAGAGCCTCTGCCCCCATCAAGAAGGTTCCCCGTAGGCTCAGTCTATCCATCGCAGTCCCTAAGACCACCAAGTACACCTGGGTGTCGTCTTCTGCAAGTGGCCAGGCCAGGCTGTCCCGGAAGCCCCTATCACCCAAAGCCCTGGCTCTGCCTCAGAGAGCTCcagagaagggaaagggggaaTCCAAGAAACCCAAATCCCCAAGTCTTTTAGCCAAGCAGCGCAAGGCAGCAGGTGCCTCCACCTCCCTCAGTAGTCTCTACCGCTGGAAGGCAGGGTCTGGAGGAGGGGGGCAGACTGGTACAGGAGGAGGGATAGGGGCCCGACGTGGGTCTGTGTTTCGTTGGACCTCGGAGAAAGAGAACGGGGCCAAGGGGGTGTCCAGTGTCCCTCTATCTGTAACTCAACGCATAATAGTGccgccctcctcctcccctggagGGTTCAAACTCAGGAGCAGGATGAAGATTATCAGGAGGCCGGCTAGCagTGAGTCTGGATCCGAGCGGAGGTCCAGCCCAGCAGACATGACCCTGAACAGCCGCTACTCTCTCCGCCGACGGACACACAGCCCGGTTCGGACACACACCCCGGTCTGGAGCCCGGGAGGTGTGAAGAGGACCATGTCCCGTGAACTGGTCTCGTTCGGCAGACACAAGCTACGACGTCTCTCCCCCAGCCCCTCCAGGACAGGTCCCGCCTCCCCGACCCTGCGTAGCCAGGTGATTCAGAGGGTGTTCAGGACCCGCTATAAGATAGAGACATGCCTGGGTGGAGACGAAGCACACACAGCCAACTATAGCCACACCCTCTCTTGGAGAGCAAAGAGGATCCAGGcggccaggAATGTACTCCAGAGCCGTCTGCGTCCCCCGGGACAGGACAGGCACCCCACAGCCCAGCactggagaggtagagggaggagcaTGCGCTGGATCGGTGGCACCCTCTACAGCGTCTCAGCCAATAAGCTGTCCCGCACCATGACAGCCATGAGATGGTCTAATCCACAGGAGATTTCCCCCACCTCGAGTACTTTCTTCCGGCCATCCAGCACACGTTTTGTGGCCAGTCGTGCGGTTCAGAGGAGTCTAGCCATCATCAGACATGCTCGTCAGAAGAAGACCCAGAAACAGTACTGCATGTACTTCAACCGCTTTGGAAAGTGTAACCGTGGCAACACCTGCCCCTATATCCATGATCCTGATAAGGTTGCCGTCTGtaccagGTTCGTGAGGGGTACATGTAAGCAGACGGATGGGACCTGTCCATTCTCGCACAAGGTGGCCAAGGAGAAGATGCCTGTGTGTTCGTACTTCCTGAAGGGTATATGTAACAACAGTAGCTGTCCCTACAGCCATGTATACGTGTCCTGCAAAGCTGCTGTGTGCCAGGACTTCATCAGGGGGTACTGCCCTCAGGGTCagaagTGTAAGAAGAAGCACACCCTGGTGTGTCCAGACTTCTCCAGTACTGGCTCCTGTCCCCAAGGGGCCCATTGTAAGCTCCAGCACCGTCAGAGGGCCAAACGCACCACTCCTAATGCCAGGGCAACTACAGGCCCCTCCGCCACCCCGGCCAAGAAGGCCCGTACCAAGAGgaccagcctgtcagtGCTTCTCCCTCAGGGTTCTGCTCAGGCAGATCCATCGACACCCTCGTCCTCAGGTCGTCACAACACCAAGCTGCCATCCTTCATCTCCCTTTCCAGCTCCCCAGAGGATGCAGATGCTCCCGACACGCCCCCCGCCGACACGTCAAAGGTCACAGAGAGAACACTGCAGCTCATGCCTCGACTCCAGAACTACAGGAGCTAGAATGGATTCTGCCTGAACATCACCAAATTAACTTTGAAAATACTACAGAGACGTATGTATTGAATGCTAATGGCAGCGCTGAGGTTTCTGACTCACATATATATCTCACCTCTACCATACTCAGGGTCTATAATGTCGTGCTCTTGTTAAAGTTGTTCTGTGGACTCATACATTTCATATAGCAATGATGTTTTTAATACAGATTTGATTGATATGTGAACATGTTTTGGTTCTTTGTAAATTGGAGATTGAATAATTTTGAATAAAACGAATGTTATTACTGTA

Function


NR:

description
zinc finger CCCH domain-containing protein 3-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036978561.1 False 3391 mRNA 0.54 12 82981449 83097063
XM_036978563.1 True 3370 mRNA 0.54 12 82981449 83097063

Neighbor


gene id symbol gene type direction distance location
LOC110524677 mafa coding downstream 6860 82966984 ~ 82974589 (-)
si:ch211-191a24.4 LOC106560402 coding downstream 375765 82601460 ~ 82605684 (-)
si:ch211-191a24.3 LOC106560396 coding downstream 445126 82433215 ~ 82536323 (-)
igfbp3 igfbp-3a1 coding downstream 634765 82275087 ~ 82346684 (-)
LOC110524669 LOC106584070 coding downstream 1091536 81843519 ~ 81889913 (-)
adcyap1r1b adcyap1r1 coding upstream 144144 83241207 ~ 83306242 (-)
LOC110524681 LOC106560421 coding upstream 487673 83584736 ~ 83599722 (-)
LOC110524682 LOC106560471 coding upstream 538244 83635307 ~ 83661963 (-)
LOC110523023 NA coding upstream 701753 83798816 ~ 83800505 (-)
LOC110524685 LOC106560426 coding upstream 707237 83804300 ~ 83825460 (-)
G447797 NA non-coding downstream 54180 82926957 ~ 82927269 (-)
G447794 NA non-coding downstream 58421 82922826 ~ 82923028 (-)
G447789 NA non-coding downstream 63360 82917874 ~ 82918089 (-)
G447556 NA non-coding downstream 73624 82907431 ~ 82907825 (-)
G447554 NA non-coding downstream 74461 82906490 ~ 82906988 (-)
G447878 NA non-coding upstream 5038 83102101 ~ 83119406 (-)
G447879 NA non-coding upstream 9956 83107019 ~ 83117319 (-)
G447883 NA non-coding upstream 22413 83119476 ~ 83119843 (-)
G447872 NA non-coding upstream 25011 83122074 ~ 83125934 (-)
G447956 NA non-coding upstream 132304 83229367 ~ 83232057 (-)
G447220 NA other downstream 590225 82390655 ~ 82391224 (-)
G446775 NA other downstream 1037838 81943285 ~ 81943611 (-)
G445220 NA other downstream 2719944 80245943 ~ 80261505 (-)
LOC118964653 LOC106581256 other downstream 2755248 80223240 ~ 80233361 (-)
G445197 NA other downstream 2804369 80176762 ~ 80177080 (-)
G447993 NA other upstream 220450 83315161 ~ 83319715 (-)
G448079 NA other upstream 413290 83510353 ~ 83520273 (-)
G448411 NA other upstream 774539 83871602 ~ 83873308 (-)
G448452 NA other upstream 819073 83916136 ~ 83916641 (-)
G450676 NA other upstream 2245725 85342788 ~ 85343072 (-)

Expression



Co-expression Network