LOC110524681 (LOC106560421)


Basic Information

Item Value
gene id LOC110524681
gene name LOC106560421
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 83584736 ~ 83599722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604537.2
GACTGCATACATCTGTCTCAATCCTAAAGTGAAAAATTaaacttgaaaataaaacatTATACAGAAATTTAACACTGTGCTCCTAAGTTTCAGCTTGTATAAATGGTTCTAGACAATTGAGGGTTTGGAATATAGGCAGTGCTGAGGGTTTTGGGGTGTACATAGACAGAAAGAGACTACTTTTTTTTTGTCTATGTAGAAAGTGCTTGGAGGTCTATGTAGAAAGTGCTTGGAGGTCTATGTAGAAAGTGCTAGTTGAGGGTTTGGTGATCTATAGACTGTGCTATTTGGGGGTTTCTGGTTGATAGACGGTGCTAGTCGAGGGTTTGGAGGTCCTGTCTGGTGAGGGATGTATTCCCGGAGAGAGGTGAACCCCATGCTGAGAGGGATAAGAGTCTCACCACAGTGGGCGCTACAGAGACGTTCAGAACAGATCACTGCACTACTCCAACAGGGAGAGCAGAAACCATTCAAGGAAGTTATTGACATTAGCTCAGGTGATTCACACAGGACCGGGATAAAACCAATCTCCTTTGTGCGACAGgtcctgtcggtctgtctgtacCCTGAGCTCCTGCATGATGACACACTTCCTGTGGACGTCAGGCAGAGAGCCCAGAGGCTGCTGGGAGAGTGTGATGGGGGCAGTGTGGGTTCATACACAGACTCCTGTGGTCTGCCTCCTGTTCAGCGCAGCGTTGCAGAGTTCATCACTGGTCGAGACGGAGGAGTGCCTTCCTATCCCCACAACATCTTTATCTCTGCTGGCTCACAGACAGCTCTGAAAGTGATGCTAAAGCTGTTGGTGAGAGGGAAGGGTGTGTCCCAAACGGGTGTGTTGACCCCCCAGCCCTACCCCCACACCCTGCCCATGCTGCTGGAGGAGGTAGGGGCTGTCCTGGTGCCTTACCAGCTGAGTGAAGAGCAGGGCTGGGCCCTGGAGCCAGGGGAGCTGCACCGAGCCCTCACCGCCTCTAGAGAGCACTGCAGGCCCAGAGCGCTCTACATCAGCAACCCTGGTATCCCCACTGGTCATGTACAGAGCAGGAAATCTATAGAATGGGTGATTCAGTTTGCTGCAGAAGAGAGGCTCTTCCTATTGGTCAATGAGgtGTATCAGGACTGTGTGTATGGGGAGGGCATGGAGTTTATGTCCTATAAGAGGGTCCTGTTTGAAATGGGTCAGCAGTACTCTGATATGGTAGAACTGGCCTCCTTTCACTCCATATCCAATGGCATCATGGGAGAGTGTGGGCTGCGTGCAGGGTACATGGAGCTGGTGAATGTGGACCCAGCAGTGATGGTGTTTGCTAAGACCCTCCTGTGTACTGACATCAGTGCCCCCGTCACAGGACAGATCGCCCTAGAAATAATGGTTAACCCTCCAAGACCTGGAGACCCCTCCCATAGCAAGTATACACAGGAGATTCTGACCAATCGGATCACCCTGGCCCAGAATGCTCAGCGGGCTTGGGAGTTTCTGATTGGTCTTCCGGGGGTGAGCTGTCAGCCAGTGACGGGAGGTCTTTTTATCTACCCCCGTCTGAACCTTCCCCCTGAGGCAGTGGAACAGGCCAGGTCTGACGGACTGGAGGCAGACGTGCTATACAGTCAGAGCCTACTCGATGaggagggggtgtgtgtgggaGCAGGGTGTGAGCATGGGCAGAGAGAGGACAAATACCACATCAGACTGTGCGTGCTGACCCCCTCTGCCACTCTAGAGAAGGTCCTGGCATGCCTCGGCTCGTTCCACCTGCACTTCCTGGACCAGTTCTCCCAGCATGCTTAGGGCTCGAGAGCCACAGTCTGCCACAGACATCTCCAGGACAGGGAGCTGGACGTTCTGAACACATTCTACTGGACATCTACCAAAGAGAGAGACGAAGGCCCTATAAATTATTGATCATGGGGAACCTCTGAGTAAACAAATGTAATAGGTCTGGACTCTATTTCGCACAAAGTAAAAAATTGTCACACAGCTTAGTtaattttttgatttgttatatTATTTTCACTGCATCAGGGATATCATACACATATGTTTCTGCTTTACAGCCTTCAGGTTGTGTGTAGGTGCCTCTGAGTAGCAAAAAGCAGGTTGGTgattattgtcatgagtcttgccCTGAAGGTAAAACTGAGCGTTTTCCACTAGAAGGGACAGCTGCAAAGTCGATATTGTCTGTATCACAAAATTATATTTTTAAATCTTAATTTAAGGATAGGGTTACGCAttagttagcagtgtggttaaggttaggtttaacatCTGATTTTAGGACTTTGTGGATGGGCCAGCTAGTGACTGCTGTGCCAGCTGGTGACCACTTCGCAGAGCTGATTCCAGGGCAAAACTTATGACAATAAATATTAACCTGCTAACAAAACAGTAACTGTGTAAGAACTAAATTCCTTGACATTTTGTGTTTGAGGTTCACATGCATGATATGCATGTGACCTTACATTTAACATTAGATTATGAATGCAAAGACAGGATCGACAGCCAttggaaataaaaaaaacacatta
>XM_036978568.1
TATTTCCAGGACTGCATACATCTGTCTCAATCCTAAAGTGAAAAATTaaacttgaaaataaaacatTATACAGAAATTTAACACTGTGCTCCTAAGTTTCAGCTTGTATAAATGGTTCTAGACAATTGAGGGTTTGGAATATAGGCAGTGCTGAGGGTTTTGGGGTGTACATAGACAGAAAGAGACTACTTTTTTTTTGTCTATGTAGAAAGTGCTTGGAGGTCTATGTAGAAAGTGCTTGGAGGTCTATGTAGAAAGTGCTAGTTGAGGGTTTGGTGATCTATAGACTGTGCTATTTGGGGGTTTCTGGTTGATAGACGGTGCTAGTCGAGGGTTTGGAGGTCCTGTCTGGTGAGGGATGTATTCCCGGAGAGAGGTGAACCCCATGCTGAGAGGGATAAGAGTCTCACCACAGTGGGCGCTACAGAGACGTTCAGAACAGATCACTGCACTACTCCAACAGgtcctgtcggtctgtctgtacCCTGAGCTCCTGCATGATGACACACTTCCTGTGGACGTCAGGCAGAGAGCCCAGAGGCTGCTGGGAGAGTGTGATGGGGGCAGTGTGGGTTCATACACAGACTCCTGTGGTCTGCCTCCTGTTCAGCGCAGCGTTGCAGAGTTCATCACTGGTCGAGACGGAGGAGTGCCTTCCTATCCCCACAACATCTTTATCTCTGCTGGCTCACAGACAGCTCTGAAAGTGATGCTAAAGCTGTTGGTGAGAGGGAAGGGTGTGTCCCAAACGGGTGTGTTGACCCCCCAGCCCTACCCCCACACCCTGCCCATGCTGCTGGAGGAGGTAGGGGCTGTCCTGGTGCCTTACCAGCTGAGTGAAGAGCAGGGCTGGGCCCTGGAGCCAGGGGAGCTGCACCGAGCCCTCACCGCCTCTAGAGAGCACTGCAGGCCCAGAGCGCTCTACATCAGCAACCCTGGTATCCCCACTGGTCATGTACAGAGCAGGAAATCTATAGAATGGGTGATTCAGTTTGCTGCAGAAGAGAGGCTCTTCCTATTGGTCAATGAGgtGTATCAGGACTGTGTGTATGGGGAGGGCATGGAGTTTATGTCCTATAAGAGGGTCCTGTTTGAAATGGGTCAGCAGTACTCTGATATGGTAGAACTGGCCTCCTTTCACTCCATATCCAATGGCATCATGGGAGAGTGTGGGCTGCGTGCAGGGTACATGGAGCTGGTGAATGTGGACCCAGCAGTGATGGTGTTTGCTAAGACCCTCCTGTGTACTGACATCAGTGCCCCCGTCACAGGACAGATCGCCCTAGAAATAATGGTTAACCCTCCAAGACCTGGAGACCCCTCCCATAGCAAGTATACACAGGAGATTCTGACCAATCGGATCACCCTGGCCCAGAATGCTCAGCGGGCTTGGGAGTTTCTGATTGGTCTTCCGGGGGTGAGCTGTCAGCCAGTGACGGGAGGTCTTTTTATCTACCCCCGTCTGAACCTTCCCCCTGAGGCAGTGGAACAGGCCAGGTCTGACGGACTGGAGGCAGACGTGCTATACAGTCAGAGCCTACTCGATGaggagggggtgtgtgtgggaGCAGGGTGTGAGCATGGGCAGAGAGAGGACAAATACCACATCAGACTGTGCGTGCTGACCCCCTCTGCCACTCTAGAGAAGGTCCTGGCATGCCTCGGCTCGTTCCACCTGCACTTCCTGGACCAGTTCTCCCAGCATGCTTAGGGCTCGAGAGCCACAGTCTGCCACAGACATCTCCAGGACAGGGAGCTGGACGTTCTGAACACATTCTACTGGACATCTACCAAAGAGAGAGACGAAGGCCCTATAAATTATTGATCATGGGGAACCTCTGAGTAAACAAATGTAATAGGTCTGGACTCTATTTCGCACAAAGTAAAAAATTGTCACACAGCTTAGTtaattttttgatttgttatatTATTTTCACTGCATCAGGGATATCATACACATATGTTTCTGCTTTACAGCCTTCAGGTTGTGTGTAGGTGCCTCTGAGTAGCAAAAAGCAGGTTGGTgattattgtcatgagtcttgccCTGAAGGTAAAACTGAGCGTTTTCCACTAGAAGGGACAGCTGCAAAGTCGATATTGTCTGTATCACAAAATTATATTTTTAAATCTTAATTTAAGGATAGGGTTACGCAttagttagcagtgtggttaaggttaggtttaacatCTGATTTTAGGACTTTGTGGATGGGCCAGCTAGTGACTGCTGTGCCAGCTGGTGACCACTTCGCAGAGCTGATTCCAGGGCAAAACTTATGACAATAAATATTAACCTGCTAACAAAACAGTAACTGTGTAAGAACTAAATTCCTTGACATTTTGTGTTTGAGGTTCACATGCATGATATGCATGTGACCTTACATTTAACATTAGATTATGAATGCAAAGACAGGATCGACAGCCAttggaaataaaaaaaacacatta

Function

NR:

description
alanine aminotransferase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604537.2 False 2532 mRNA 0.48 11 83584736 83599713
XM_036978568.1 True 2451 mRNA 0.49 10 83584736 83599722

Neighbor

gene id symbol gene type direction distance location
adcyap1r1b adcyap1r1 coding downstream 278494 83241207 ~ 83306242 (-)
LOC110524678 LOC106560415 coding downstream 487673 82981449 ~ 83097063 (-)
LOC110524677 mafa coding downstream 610147 82966984 ~ 82974589 (-)
si:ch211-191a24.4 LOC106560402 coding downstream 979052 82601460 ~ 82605684 (-)
si:ch211-191a24.3 LOC106560396 coding downstream 1048413 82433215 ~ 82536323 (-)
LOC110524682 LOC106560471 coding upstream 35585 83635307 ~ 83661963 (-)
LOC110523023 NA coding upstream 199094 83798816 ~ 83800505 (-)
LOC110524685 LOC106560426 coding upstream 204578 83804300 ~ 83825460 (-)
LOC110522893 LOC106560472 coding upstream 280759 83879999 ~ 83896988 (-)
podn LOC106560429 coding upstream 466452 84066174 ~ 84120343 (-)
G448176 NA non-coding downstream 15687 83568273 ~ 83569049 (-)
G448163 NA non-coding downstream 31398 83553098 ~ 83553338 (-)
G448086 NA non-coding downstream 48419 83535716 ~ 83536317 (-)
G448075 NA non-coding downstream 66713 83501265 ~ 83518023 (-)
G448071 NA non-coding downstream 67008 83466201 ~ 83517728 (-)
G448210 NA non-coding upstream 42637 83642359 ~ 83648780 (-)
G448242 NA non-coding upstream 87210 83686932 ~ 83687169 (-)
G448252 NA non-coding upstream 98328 83698050 ~ 83698306 (-)
G448272 NA non-coding upstream 127750 83727472 ~ 83727983 (-)
G448289 NA non-coding upstream 162059 83761781 ~ 83769470 (-)
G448079 NA other downstream 64463 83510353 ~ 83520273 (-)
G447993 NA other downstream 265021 83315161 ~ 83319715 (-)
G447220 NA other downstream 1193512 82390655 ~ 82391224 (-)
G446775 NA other downstream 1641125 81943285 ~ 81943611 (-)
G445220 NA other downstream 3323231 80245943 ~ 80261505 (-)
G448411 NA other upstream 271880 83871602 ~ 83873308 (-)
G448452 NA other upstream 316414 83916136 ~ 83916641 (-)
G450676 NA other upstream 1743066 85342788 ~ 85343072 (-)
lurap1 LOC106560455 other upstream 1845959 85443496 ~ 85472422 (-)
G450752 NA other upstream 1887120 85486842 ~ 85487158 (-)

Expression


Co-expression Network