LOC110524682 (LOC106560471)


Basic Information

Item Value
gene id LOC110524682
gene name LOC106560471
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 83635307 ~ 83661963 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604538.2
CTGATGGAAACGGGATATGAAGTCATGGCTGGCTATAATGCAACCCTGCCAGCCTAACACCACGGCATGACTTACCTTGTCATGTACCGGTGACTGACCACCTTGGTGGAAGAGCAGGAGGTGCGAGGCTATCGCATACATGTCACCGTGACTTTTTCCAGATCGAATATTCTTCAATGTTCAAAACATAACCGTAGTTTGACGCGCGAAACGGAGAACTCCGCACTGCAGTCACACAGTAGGCTATATCACGTACTTTCAGTCGCTCTTGCATACACATTTTATTACACGCGTGTTTGGTTTATGTCTTGAGGAAAATTCTGAAAAAGGTTTCTCTGCATGGAAATCAAAGTAATATACCTGATGATGACACCGCATCTTTcctaacagtcagtcagtcaagggAGTTACTATGGAATTAACTGCGAACGACCGAAGACATTTGACATAGATaaggaaataaaataaataattgaccAAATATTTGTAATTCGCCTTTTCACCAATGCGTGCTAAATTAATACGTTTTTAATGCATCTGAAACTGGATCTGAAAACTTTAACAATCGCTTTCATGAGCTAGATGTAGAATATAAGGCTATTTTATTGTTTGGGTATATCGGTTCTCTTTAATAATTCCAGTCGACTCCTCTGACTGTGACAGTCGTGACCAATGTTGGACCCTCGAGCTCAACGTGCCTCTCGTGACTGACACATCAGAAGGAAATCTATTGGATTTATTACAAAACAACCACATCTATCTTTACTAAAGACAGCAATAAGTTTGTCAGTTGAGTGGATTTTATTTCGTGAAtgacacttttttatttttacgcATTATATTTTTGTGTCTTGGTGACCTGGCTGTCATTACGCGGTATTGATGGACACACACAGGTTGTTGTTGCTGCCGGACCTCGCGCAGTGATATTTAGTAGACATCATGTTTCTATGCAACACAAGTGCAATCAAAGACTGGAGCTATTTCCTCTCTCAGATCCTGCCTCTGATCAACAAGACGTCTGGCTTGGTCAATCAGGGCATCATCGACGAAGCGGAGGTGGCGACCACCACCATGGTGACTGCTCTAGAGCCGGACCTGAGCGGGATAAGCGCCAGTCACCCCCCGCTGAACTCTAATCACACCTCCGGGATGGAACATGTCTTTCAGTACTCGGAGAGTGACCTTCTGTATACGGACAACAGGACACCAGCCCGGGACCCCATCCCACTGCCCAAGGCCGTGCTCTACCTTGTTTGCGCGGCTCTAGTGGTGGTCGCGGTGGTATATGCCATAGTGGGACACCTGGTCAAGGATCTGGTTACTGAGTTTGTAGacTGCAGGTTGTTTGGTGGCTGCACAGTGACCAACAGGAGTAAGAGTGAGATAAACTGTATCACCAACAGCGTGAACGAGATGAGTGAGATGAGCGAAAGGCCACAGTTGGTAGAGATGAACTACATTACTTGTAACCACAGTAACTGCCTGGGGGCGACTGCCCAACCAGAAGAACTCATAGTGACCATAGACGAGACGTTACAGCTGCCGCGGGATACACACACTGGGACCTAAACCTTGGGCACAACAGTCATCTGATATCGGATAAGAGGGAAAGGAAACAGCCAGTTTGCTTGGGTTTCCTTCATAAATGGAGCAACCTAGTCTATCACAAACCGATATCCACTGTCCATTACAGTACAGCAGTGGCATCGTCTGATGTTTGTCATGAGGTTGTTAAAATGAGGACAAAAAGTATTGAAAAGTCTTAAAACAAAGGCGATGGACAATTTTACAGCACAGGATGCAAAAGTTTGACATTGAACTGGAGGAATAACTAACAGTTGGAGTGGACTGATTCTTTTTCTGAATTTCACCATCCTGTCACTCATCATTGTGGCTTGTTCTTGGTAAGCCTTCACCTGTACACATTGTACTCTCTAAATGTGATCCAAGTATTTGACCGTGACTAATCtctcgttcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

NR:

description
uncharacterized protein LOC110524682

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604538.2 True 2040 mRNA 0.45 2 83635307 83661963

Neighbor

gene id symbol gene type direction distance location
LOC110524681 LOC106560421 coding downstream 35585 83584736 ~ 83599722 (-)
adcyap1r1b adcyap1r1 coding downstream 329065 83241207 ~ 83306242 (-)
LOC110524678 LOC106560415 coding downstream 538244 82981449 ~ 83097063 (-)
LOC110524677 mafa coding downstream 660718 82966984 ~ 82974589 (-)
si:ch211-191a24.4 LOC106560402 coding downstream 1029623 82601460 ~ 82605684 (-)
LOC110523023 NA coding upstream 136853 83798816 ~ 83800505 (-)
LOC110524685 LOC106560426 coding upstream 142337 83804300 ~ 83825460 (-)
LOC110522893 LOC106560472 coding upstream 218518 83879999 ~ 83896988 (-)
podn LOC106560429 coding upstream 404211 84066174 ~ 84120343 (-)
LOC118964673 NA coding upstream 427029 84088992 ~ 84090407 (-)
G448176 NA non-coding downstream 66258 83568273 ~ 83569049 (-)
G448163 NA non-coding downstream 81969 83553098 ~ 83553338 (-)
G448086 NA non-coding downstream 98990 83535716 ~ 83536317 (-)
G448075 NA non-coding downstream 117284 83501265 ~ 83518023 (-)
G448072 NA non-coding downstream 126415 83467122 ~ 83508892 (-)
G448242 NA non-coding upstream 24969 83686932 ~ 83687169 (-)
G448252 NA non-coding upstream 36087 83698050 ~ 83698306 (-)
G448272 NA non-coding upstream 65509 83727472 ~ 83727983 (-)
G448289 NA non-coding upstream 99818 83761781 ~ 83769470 (-)
G448296 NA non-coding upstream 109984 83771947 ~ 83772719 (-)
G448079 NA other downstream 115034 83510353 ~ 83520273 (-)
G447993 NA other downstream 315592 83315161 ~ 83319715 (-)
G447220 NA other downstream 1244083 82390655 ~ 82391224 (-)
G446775 NA other downstream 1691696 81943285 ~ 81943611 (-)
G445220 NA other downstream 3373802 80245943 ~ 80261505 (-)
G448411 NA other upstream 209639 83871602 ~ 83873308 (-)
G448452 NA other upstream 254173 83916136 ~ 83916641 (-)
G450676 NA other upstream 1680825 85342788 ~ 85343072 (-)
lurap1 LOC106560455 other upstream 1783718 85443496 ~ 85472422 (-)
G450752 NA other upstream 1824879 85486842 ~ 85487158 (-)

Expression


Co-expression Network