LOC110522893 (LOC106560472)


Basic Information

Item Value
gene id LOC110522893
gene name LOC106560472
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 83879999 ~ 83896988 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601344.2
gagagaggtatAGTGTTTCTTTGGAGATTGCGTTACAGTGGggcgaggagagagcgagagagagaggtgggctcAGTAATGGGGATTTACTTAAATACCTTGCAAGTCAACCAGCAAGACACAGAGCACTCTGCTGTTTGGATTGACAATAATATGGACGGATTGAAACTTCAACTGATCTAACAGATTGTATAGTTGGCGTGTCTGAGCGTTTGGGGTCAGCATGAGCGCGGACTGCACGAGCTATTACAACGCAGAGAAAGTGCTCGTAAACGAGTTCACGTGCCCTAAACCGGACAACGATGCAGGAGCCCTTTTCTGCTGTGGCTTCAATGACATGAAATACTGTTGTGATGACCCAAACAGTTTTTTCCCATACGAGTATGGATACATGTGGTGGTTAAGTCTGGGAGCGCTGGTTGGCCTGTCCATAGCAGCTGTGGTCCTGCTAGCGTTCATCATCACTATCTGTGTCCTGTGCTATCTGTTCATCGCGACCAAACCCAGAGGCCTTGACAACGGACTGCCCCTCATAGCACCAGGTTCTGAACCCAGTCCACGAGAGGGGCCGAGTCGGAGTCACCCCAGTAGCCCCCCTACGGGTCCCCAAGGGTTTAAGAAGCACTTCTTGAGTGGTAAACTGGACTGTGACAACCAGCCTCCAGATCCAGACCGCCTCTTCCAGAGGTGCTTCATGGCCACCGTCACCACCATCAATGTGGAGGGGTCCTCATAGACTGGCCTAGGACTCTCAAACCAGTATagactgggaggagagggggatggctgtgtaagaggaggagaagataggaGCATTAAACCAGGCTGACAATGCATCTACTA
>TU507525
agaagataggaGCATTAAACCAGGCTGACAATGCATCTACTACCaggactctctttctctctctttttctctctatttgtgtctcctctttaaaggtccaatgcagccttttatatctcaatatcaaattctTTATGGGTAATAATTAAGTATCTTACTGTGActgttttcaattcaaatggccaaaaatatgcaaaaatagcttcttagcaaagaacaATTTCTCAAGCCAGAATTTTTCTAGGACTGTCTAGGAGTTGCCTGAGTGAAGGGAACACTGAAAACtcattggcagagaggtttggaactctctttcttattgtgCTGTTAACTAATTttccgcctggtgatgtcaccaggaaggccaaaacatttcaggcggtcttttcaaacagctcttacaattaaagggcattatcataatttccacaatttcacagtattattctaaTCTCAGTGTAGAAATATATAAACAATACAGGAAAAgggactgcactgggcctttaactctCTCATCCCCCCCA
>TU507526
ATGGACGGATTGAAACTTCAACTGATCTAACAGATTGTATAGTTGGCGTGTCTGAGCGTTTGGGGTCAGCATGAGCGCGGACTGCACGAGCTATTACAACGCAGAGAAAGTGCTCGTAAACGAGTTCACGTGCCCTAAACCGGACAACGATGCAGGAGCCCTTTTCTGCTGTGGCTTCAATGACATGAAATACTGTTGTGATGACCCAAACAGTTTTTTCCCATACGAGTATGGATACATGTGGTGGTTAAGGTAAGAATAATAATGTAACTTTGCTAACTTATAAGGAATGCCTAAAACACTCTGCACTGCACTCTTTCTTTTATACAGTGAATTTCTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601344.2 False 843 mRNA 0.51 3 83880481 83896988
TU507525 False 524 lncRNA 0.38 1 83879999 83880522
TU507526 True 340 lncRNA 0.43 1 83896496 83896835

Neighbor

gene id symbol gene type direction distance location
LOC110524685 LOC106560426 coding downstream 55021 83804300 ~ 83825460 (-)
LOC110523023 NA coding downstream 79976 83798816 ~ 83800505 (-)
LOC110524682 LOC106560471 coding downstream 218518 83635307 ~ 83661963 (-)
LOC110524681 LOC106560421 coding downstream 280759 83584736 ~ 83599722 (-)
adcyap1r1b adcyap1r1 coding downstream 574239 83241207 ~ 83306242 (-)
podn LOC106560429 coding upstream 169186 84066174 ~ 84120343 (-)
LOC118964673 NA coding upstream 192004 84088992 ~ 84090407 (-)
LOC118964672 NA coding upstream 193558 84090546 ~ 84091472 (-)
scp2b LOC106560430 coding upstream 224361 84121349 ~ 84138828 (-)
magoh LOC106560432 coding upstream 254790 84151778 ~ 84157364 (-)
G448413 NA non-coding downstream 9100 83870989 ~ 83871381 (-)
G448387 NA non-coding downstream 19004 83861152 ~ 83861477 (-)
G448384 NA non-coding downstream 21354 83858695 ~ 83859127 (-)
G448378 NA non-coding downstream 24931 83849702 ~ 83855550 (-)
G448302 NA non-coding downstream 103262 83777006 ~ 83777219 (-)
G448445 NA non-coding upstream 10795 83907783 ~ 83908071 (-)
G449074 NA non-coding upstream 192867 84089855 ~ 84090876 (-)
G449141 NA non-coding upstream 231564 84128552 ~ 84128880 (-)
G449145 NA non-coding upstream 238936 84135924 ~ 84141100 (-)
G449168 NA non-coding upstream 282889 84179877 ~ 84208263 (-)
G448411 NA other downstream 7173 83871602 ~ 83873308 (-)
G448079 NA other downstream 360208 83510353 ~ 83520273 (-)
G447993 NA other downstream 560766 83315161 ~ 83319715 (-)
G447220 NA other downstream 1489257 82390655 ~ 82391224 (-)
G446775 NA other downstream 1936870 81943285 ~ 81943611 (-)
G448452 NA other upstream 19148 83916136 ~ 83916641 (-)
G450676 NA other upstream 1445800 85342788 ~ 85343072 (-)
lurap1 LOC106560455 other upstream 1548693 85443496 ~ 85472422 (-)
G450752 NA other upstream 1589854 85486842 ~ 85487158 (-)
G450957 NA other upstream 1980745 85877733 ~ 85878974 (-)

Expression


Co-expression Network