podn (LOC106560429)


Basic Information

Item Value
gene id podn
gene name LOC106560429
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 84066174 ~ 84120343 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978571.1
CACTCGCactgttttccctctctctcttctctctttccttctctccttctttctctgaacttttcctctctcactcccactctcctGTCACATCTGGTGGGGATCTGGATCTGAACTGACCAGGGCCGGCCCTGGGAGTGACTGTGTAGTTACTGTGGCTCCTCTCTATCCTGCTATGGGACTGTCTCTGGCTGGACTGGAAACCAGACTGCtttgcctctgtctctgtctctgctaaCCTCTCTCTGTCAGAGAAGATACTACACTTTGTGTCCTCCTTCGCCTAACCACCGCCGGGAGGCCTGCTGTTCTGACAATACCTATCTGACCATCGGTGGTACAGGGCAGCTCAGGTAGGTCAGGTAGCTGAAGAAGTGAGACGACCAGGCACCACCAGCAGACATGGCCAGGACATCTCTGCTGCAGGGCCTGACTGTGTTGCTCCTGGCCTGGGCTCTGGTGCACTGCCAAGCCCCTCTGGAGCcccaggaggaagaggaagaggacgatACCATGGAGGAAACAGAGATAGAGACCTTCCTGGTCCCGGCCGTGGCGAAGGTGGAGCCGGTGGTGTGTCCTGGCGAGTGTAGCTGTACAGAGGAGGGAGCAGTGGACTGTGCTGGGGTTGACCTCATGGACTTTCCTAGTGAGCTGTCTGAGAGCACGCGCATTCTCTCGCTGCAGAACAACCGGATAGAACTATTAACTGTTGAGGACCTGGCACGTCTGCAGCAACTGGAAACACTAAATCTGCAAAACAACCGTCTGACAACCCAAGgccTTGAAGATGAAGGGTTTACAGTGCTGGAACAGCTGACCTACTTGTACTTGGCCAATAACAAGCTCACCACAGCACCCAGACACCTGCCTCCCTCACTGGTCAGTGCTGATTTTGCCGCAAATTCACTCACAAAGATCTACCCGTACACATTTGGCCAGAAGCCAGGACTGAaGTCAGTGTATCTCCATAACAACAAACTGACAGATGCAGGGCTACCAGAGAACATGTTTAACGGTTCTGACAGCCTAGAGGTTCTCATCATGTCCAGTAACTTCCTCCGCTACGTCCCTAGGAACCTGCCCTCTGCTCTCTACCGCCTACATCTAAAGAACAACATGCTGGAGAAGATCCCGTCAGGGGCGTTTGATAGCCTGACCCAGCTCAGAGAGCTCTACCTACAGAACAACCTGCTTAGCAACGAAGGCATGGACAACGAGACCTTCAGcCAGTTGACCAAGCTGGAGTATCTGGACCTGTCCAACAACAACCTGAGTGTGGTTCCTCAGGGTCTGCCTCGAGGTCTGATACTGCTACACCTAGAGAAGAACAACATCCGCAGTATCCCTGGCGATGCCCTCATAGCCTGCCGTAACCTGGAGTACCTACTGCTGCACAACAATCAGCTACGCTCCCGCTCCATACACCAAGCTGCATTCCATGGCCTGAAGAAGCTACACACCCTCCACATGTACAACAACCAGCTGGAGCGTGTTCCCAGGGGTCTCCCCCGCCGAGCCAAGACCCTTATGCTGCTTCACAACGGCATCAACGAGATTGGACGCAATGACCTGGTGATGCTTTACACCCTGACCGAGCTCAACCTCAGCTACAACCGCCTCATTAGCCCCAAGCTGCACcgagaagCTTTCAGGAAGCTGCGTCTGCTGGAGACCTTGGACCTGTCAGGGAACGCCCTCCACTCCCTGCCCCTGGGGCTTCCCCGCTCCCTGCAGGTCCTCCGGGTGAAGGACAACCAGCTGACCTCCATACCAGAGGGGGCGCTGCAGGGCATGTCCAAGCTCAGGGAGATCCACCTCAACCACAACCAGCTCAAACTCAACTCCATCTACCAGGGAGCCTGGATGGAGCTCAGCGCTCTGACGACGTTGGACCTGTCCAGTAACCAGCTGTCCCATGTCCCCTCTGACCTGCCTGAGTCTCTGGAGTACCTGTACCTTCAGTCCAATCGTATTAGCACTGTCCCTGCCACCGCCTTCGAGGGCACCCCCAACATCAAGGGTATCTTCCTACGGTTCAACCATCTGTCAGCCCACTCTGTGAAGGAGAGCTCCTTCAAACACCTCACCAACCTGCGGGTGCTAGACATTGGCCACTTGAGTCACTCCGACCCCTCTGGCTCCCCCGGACCCCCCTTCggacaagaggaagaggaggaggaggaagagatcgagacagaggaagtgggagagggaTTTGCTTAATAAGTTTAGCCCATGGACACAAGCTGCTTGAATGATCGGAACCAAATGGTGCAGTTGTTTGGGATGCCATCCCAAAGTCCTGTTATTTTGAACGTACagaaacatttatttttgcaGTAGATCAGACTCAAttcaaaaatgtaaattaaactATGAATGGAAGGGGAACATGGTATTTTGTCCCATTGCATATAGTGGTGAATTGCAGATGCACATATCTCTGGTGCAGGATACtagattaaattgtatttttgtttGTTGTATTATTTTTCTGGCCTTTGCTTGTCTATGCAACGACAGATACGGTTGATTTTTTGttcatcccaaattgcaccctattcactattgtgtgcactacatttgactagggcctatagggctctggtcaaaagtactgcactatatagggaatagtgtgccaattGGGACACCGCTTGTCTCACCACCAGGTTAGTGTAaccagaaagaaagagatagtCAGACCTCATATGTTGATCATATTGTATGAGTCCCATCTCTGAACTTTACTGTGTGCTAGCTGTGTCACCATACAAAGAAGATTATGTTGAGATTTGAAGTTATTGTCATCAGTTCTGAGCCTGTattcatacagatgtaggatcttaatttgatcaccctgttgcaggagaacattcctgcaatgcaggaaatgtaaattgtgtactgtagtgtatttgaggtttaaaaaggtttCTGGAGTTTGTAATTctcactttgaaatttcagacttgattttccattGCAAAATAATGTATCAACTCCTACAAAGATGttcatgaattataatccacataataattcacatttcctgttgctgcaggattattttcctgctgtagcaaactggctcaaatgaagatcctacatctgtacagtaaAGAGTCTCAGACTAGGAGTACTGATCTTGGATCAGATCCCCGTTCTTATTCATTATGGTCTAAatggctaaactgatcctatatcagcacttctactctgagatgctttgtggatactgGCTCTGGCTGTGATTGTGTGTCATGGCCTGGTAAGACAGTCTGGCTTTATGTCATTCTGTTATTCTTATATCATCGTTAATATGCCACAGAAGTTCCGTGACTGTGTCACAATCTCCTCCCTCGCTCAGCCAACCAGGAGCTTGATCCATGCTGCTAATCTAATGCCTTGCTTTAATCCAGTCTTGTTTTACAATGATAACGATTGCAAATATTTGTATATGGTTTCTGAAAAACTCATGCTATTAAATTAATCTCGTTGCTATGAA
>XM_036978572.1
gtgtagccttgtttgctagttagctacgtagctagcgagccagccaaccagccagcccatagagagagcattgcattgtggaaTTGTGGTCGATTTGAGCTGCAACTGATTTCCACAACAATTTTCacatgttgctaccaaccttattATAACATTTGTTCACAGAAATATTATTCTCAAATATTAGTGTTATGTAACACTGTAAATCATAGGAATGTGGTTTTGGGGGAATTTTTCCTTTTATGGCGACCTCTCTGGTTTATTGTGTGAACAGCGGCGATGTGTTGGCAGGAAATAGACAGAAGTTAGTCTCAGGATGTGCAGGCTGGAGGTTTGTCATGCCAGACTCCAAAGTCAAAACGTTTGTAGATATTTGTCATACAGGAACACTGAAAATCAGCTAAATTCCATGTCTATTGGAATTTTAAAAAGTATCTGTCTACTTTCTGCCTAACACCGGTTATTGAGAGTTTGTTTTCTAGATAGACTCCTGTGCCAGTCAGGGTTGAAACTCAAAAATGTACAAAGGCATTGTATGAAGGAGCTTTCACACCATTTGTTCAGTTTCCTTTAATTTTGTCTGATGTCACCTAGCCAGGAGGCAGGCAGTTCTTGATCATTGGGGTCATCCTGCCCTACTGCTCTGAGGGTTCTGCTCTCTCTAACAAACCCCATTGACCTGGTTCCTGGTTCTATACACTGCCACACTTtagtttttattttgtaaatgtgaGCAACAGAGCATAAGAGAGAGTGTGATTACAAAAAAAATCTGTTAACGAGCTTTGACCCATATTCCACTACATACTGCAGAACTGACCTGGCTCTGGCCTGATTTTCTCTCACCGGTCTCTTCTGGGTCCAGCTCTCTTTAGTTGGACTAAAGAGTTGCGAAACTCACTTAGTATAAATACCAAATCAATGACTGTTTTTAGGACTGTCAAATGTTTCATGTTTTATAAAGTATTTAGCCTTTTAAGGGACTACATCATTTATAATGAGGAATACCTGGAGAAAATCTGACCTCCCTTcagggaaatatattttttacactacCCTCCATGAACGCTTGAAAAAAAACgtgaccctcccctatacccaaaataataattgaaGCATAAAGTGGAGAGCGGAGAACATGCTTAATGTTTACCCTCACTCTTaagacagaccagagccttagatatgcaATTTTAGGAACTGTTCTTCATTTTGGAAGCATTACATGGCAAAGTAGCCAGAAAGTTGTGGATTCGTCGACTACTGCGGACAAGGATACTACACTTTGTGTCCTCCTTCGCCTAACCACCGCCGGGAGGCCTGCTGTTCTGACAATACCTATCTGACCATCGGTGGTACAGGGCAGCTCAGGTAGGTCAGGTAGCTGAAGAAGTGAGACGACCAGGCACCACCAGCAGACATGGCCAGGACATCTCTGCTGCAGGGCCTGACTGTGTTGCTCCTGGCCTGGGCTCTGGTGCACTGCCAAGCCCCTCTGGAGCcccaggaggaagaggaagaggacgatACCATGGAGGAAACAGAGATAGAGACCTTCCTGGTCCCGGCCGTGGCGAAGGTGGAGCCGGTGGTGTGTCCTGGCGAGTGTAGCTGTACAGAGGAGGGAGCAGTGGACTGTGCTGGGGTTGACCTCATGGACTTTCCTAGTGAGCTGTCTGAGAGCACGCGCATTCTCTCGCTGCAGAACAACCGGATAGAACTATTAACTGTTGAGGACCTGGCACGTCTGCAGCAACTGGAAACACTAAATCTGCAAAACAACCGTCTGACAACCCAAGgccTTGAAGATGAAGGGTTTACAGTGCTGGAACAGCTGACCTACTTGTACTTGGCCAATAACAAGCTCACCACAGCACCCAGACACCTGCCTCCCTCACTGGTCAGTGCTGATTTTGCCGCAAATTCACTCACAAAGATCTACCCGTACACATTTGGCCAGAAGCCAGGACTGAaGTCAGTGTATCTCCATAACAACAAACTGACAGATGCAGGGCTACCAGAGAACATGTTTAACGGTTCTGACAGCCTAGAGGTTCTCATCATGTCCAGTAACTTCCTCCGCTACGTCCCTAGGAACCTGCCCTCTGCTCTCTACCGCCTACATCTAAAGAACAACATGCTGGAGAAGATCCCGTCAGGGGCGTTTGATAGCCTGACCCAGCTCAGAGAGCTCTACCTACAGAACAACCTGCTTAGCAACGAAGGCATGGACAACGAGACCTTCAGcCAGTTGACCAAGCTGGAGTATCTGGACCTGTCCAACAACAACCTGAGTGTGGTTCCTCAGGGTCTGCCTCGAGGTCTGATACTGCTACACCTAGAGAAGAACAACATCCGCAGTATCCCTGGCGATGCCCTCATAGCCTGCCGTAACCTGGAGTACCTACTGCTGCACAACAATCAGCTACGCTCCCGCTCCATACACCAAGCTGCATTCCATGGCCTGAAGAAGCTACACACCCTCCACATGTACAACAACCAGCTGGAGCGTGTTCCCAGGGGTCTCCCCCGCCGAGCCAAGACCCTTATGCTGCTTCACAACGGCATCAACGAGATTGGACGCAATGACCTGGTGATGCTTTACACCCTGACCGAGCTCAACCTCAGCTACAACCGCCTCATTAGCCCCAAGCTGCACcgagaagCTTTCAGGAAGCTGCGTCTGCTGGAGACCTTGGACCTGTCAGGGAACGCCCTCCACTCCCTGCCCCTGGGGCTTCCCCGCTCCCTGCAGGTCCTCCGGGTGAAGGACAACCAGCTGACCTCCATACCAGAGGGGGCGCTGCAGGGCATGTCCAAGCTCAGGGAGATCCACCTCAACCACAACCAGCTCAAACTCAACTCCATCTACCAGGGAGCCTGGATGGAGCTCAGCGCTCTGACGACGTTGGACCTGTCCAGTAACCAGCTGTCCCATGTCCCCTCTGACCTGCCTGAGTCTCTGGAGTACCTGTACCTTCAGTCCAATCGTATTAGCACTGTCCCTGCCACCGCCTTCGAGGGCACCCCCAACATCAAGGGTATCTTCCTACGGTTCAACCATCTGTCAGCCCACTCTGTGAAGGAGAGCTCCTTCAAACACCTCACCAACCTGCGGGTGCTAGACATTGGCCACTTGAGTCACTCCGACCCCTCTGGCTCCCCCGGACCCCCCTTCggacaagaggaagaggaggaggaggaagagatcgagacagaggaagtgggagagggaTTTGCTTAATAAGTTTAGCCCATGGACACAAGCTGCTTGAATGATCGGAACCAAATGGTGCAGTTGTTTGGGATGCCATCCCAAAGTCCTGTTATTTTGAACGTACagaaacatttatttttgcaGTAGATCAGACTCAAttcaaaaatgtaaattaaactATGAATGGAAGGGGAACATGGTATTTTGTCCCATTGCATATAGTGGTGAATTGCAGATGCACATATCTCTGGTGCAGGATACtagattaaattgtatttttgtttGTTGTATTATTTTTCTGGCCTTTGCTTGTCTATGCAACGACAGATACGGTTGATTTTTTGttcatcccaaattgcaccctattcactattgtgtgcactacatttgactagggcctatagggctctggtcaaaagtactgcactatatagggaatagtgtgccaattGGGACACCGCTTGTCTCACCACCAGGTTAGTGTAaccagaaagaaagagatagtCAGACCTCATATGTTGATCATATTGTATGAGTCCCATCTCTGAACTTTACTGTGTGCTAGCTGTGTCACCATACAAAGAAGATTATGTTGAGATTTGAAGTTATTGTCATCAGTTCTGAGCCTGTattcatacagatgtaggatcttaatttgatcaccctgttgcaggagaacattcctgcaatgcaggaaatgtaaattgtgtactgtagtgtatttgaggtttaaaaaggtttCTGGAGTTTGTAATTctcactttgaaatttcagacttgattttccattGCAAAATAATGTATCAACTCCTACAAAGATGttcatgaattataatccacataataattcacatttcctgttgctgcaggattattttcctgctgtagcaaactggctcaaatgaagatcctacatctgtacagtaaAGAGTCTCAGACTAGGAGTACTGATCTTGGATCAGATCCCCGTTCTTATTCATTATGGTCTAAatggctaaactgatcctatatcagcacttctactctgagatgctttgtggatactgGCTCTGGCTGTGATTGTGTGTCATGGCCTGGTAAGACAGTCTGGCTTTATGTCATTCTGTTATTCTTATATCATCGTTAATATGCCACAGAAGTTCCGTGACTGTGTCACAATCTCCTCCCTCGCTCAGCCAACCAGGAGCTTGATCCATGCTGCTAATCTAATGCCTTGCTTTAATCCAGTCTTGTTTTACAATGATAACGATTGCAAATATTTGTATATGGTTTCTGAAAAACTCATGCTATTAAATTAATCTCGTTGCTATGAA
>XM_036978573.1
CCCACTCGCactgttttccctctctctcttctctctttccttctctccttctttctctgaacttttcctctctcactcccactctcctGTCACATCTGGTGGGGATCTGGATCTGAACTGACCAGGGCCGGCCCTGGGAGTGACTGTGTAGTTACTGTGGCTCCTCTCTATCCTGCTATGGGACTGTCTCTGGCTGGACTGGAAACCAGACTGCtttgcctctgtctctgtctctgctaaCCTCTCTCTGTCAGAGAAGATACTACACTTTGTGTCCTCCTTCGCCTAACCACCGCCGGGAGGCCTGCTGTTCTGACAATACCTATCTGACCATCGGTGGTACAGGGCAGCTCAGGTAGGTCAGGTAGCTGAAGAAGTGAGACGACCAGGCACCACCAGCAGACATGGCCAGGACATCTCTGCTGCAGGGCCTGACTGTGTTGCTCCTGGCCTGGGCTCTGGTGCACTGCCAAGCCCCTCTGGAGCcccaggaggaagaggaagaggacgatACCATGGAGGAAACAGAGATAGAGACCTTCCTGGTCCCGGCCGTGGCGAAGGTGGAGCCGGTGGTGTGTCCTGGCGAGTGTAGCTGTACAGAGGAGGGAGCAGTGGACTGTGCTGGGGTTGACCTCATGGACTTTCCTAGTGAGCTGTCTGAGAGCACGCGCATTCTCTCGCTGCAGAACAACCGGATAGAACTATTAACTGTTGAGGACCTGGCACGTCTGCAGCAACTGGAAACACTAAATCTGCAAAACAACCGTCTGACAACCCAAGgccTTGAAGATGAAGGGTTTACAGTGCTGGAACAGCTGACCTACTTGTACTTGGCCAATAACAAGCTCACCACAGCACCCAGACACCTGCCTCCCTCACTGGTCAGTGCTGATTTTGCCGCAAATTCACTCACAAAGATCTACCCGTACACATTTGGCCAGAAGCCAGGACTGAaGTCAGTGTATCTCCATAACAACAAACTGACAGATGCAGGGCTACCAGAGAACATGTTTAACGGTTCTGACAGCCTAGAGGTTCTCATCATGTCCAGTAACTTCCTCCGCTACGTCCCTAGGAACCTGCCCTCTGCTCTCTACCGCCTACATCTAAAGAACAACATGCTGGAGAAGATCCCGTCAGGGGCGTTTGATAGCCTGACCCAGCTCAGAGAGCTCTACCTACAGAACAACCTGCTTAGCAACGAAGGCATGGACAACGAGACCTTCAGcCAGTTGACCAAGCTGGAGTATCTGGACCTGTCCAACAACAACCTGAGTGTGGTTCCTCAGGGTCTGCCTCGAGGTCTGATACTGCTACACCTAGAGAAGAACAACATCCGCAGTATCCCTGGCGATGCCCTCATAGCCTGCCGTAACCTGGAGTACCTACTGCTGCACAACAATCAGCTACGCTCCCGCTCCATACACCAAGCTGCATTCCATGGCCTGAAGAAGCTACACACCCTCCACATGTACAACAACCAGCTGGAGCGTGTTCCCAGGGGTCTCCCCCGCCGAGCCAAGACCCTTATGCTGCTTCACAACGGCATCAACGAGATTGGACGCAATGACCTGGTGATGCTTTACACCCTGACCGAGCTCAACCTCAGCTACAACCGCCTCATTAGCCCCAAGCTGCACcgagaagCTTTCAGGAAGCTGCGTCTGCTGGAGACCTTGGACCTGTCAGGGAACGCCCTCCACTCCCTGCCCCTGGGGCTTCCCCGCTCCCTGCAGGTCCTCCGGGTGAAGGACAACCAGCTGACCTCCATACCAGAGGGGGCGCTGCAGGGCATGTCCAAGCTCAGGGAGATCCACCTCAACCACAACCAGCTCAAACTCAACTCCATCTACCAGGGAGCCTGGATGGAGCTCAGCGCTCTGACGACGTTGGACCTGTCCAGTAACCAGCTGTCCCATGTCCCCTCTGACCTGCCTGAGTCTCTGGAGTACCTGTACCTTCAGTCCAATCGTATTAGCACTGTCCCTGCCACCGCCTTCGAGGGCACCCCCAACATCAAGGGTATCTTCCTACGgatagaacagaactgATGGTGGTTCAACCATCTGTCAGCCCACTCTGTGAAGGAGAGCTCCTTCAAACACCTCACCAACCTGCGGGTGCTAGACATTGGCCACTTGAGTCACTCCGACCCCTCTGGCTCCCCCG

Function

NR:

description
podocan

GO: NA

KEGG:

id description
K25037 PODN; podocan

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978571.1 False 3511 mRNA 0.49 13 84066174 84098960
XM_036978572.1 False 4529 mRNA 0.46 13 84066174 84120343
XM_036978573.1 True 2172 mRNA 0.55 14 84067536 84098962

Neighbor

gene id symbol gene type direction distance location
LOC110522893 LOC106560472 coding downstream 169186 83879999 ~ 83896988 (-)
LOC110524685 LOC106560426 coding downstream 240714 83804300 ~ 83825460 (-)
LOC110523023 NA coding downstream 265669 83798816 ~ 83800505 (-)
LOC110524682 LOC106560471 coding downstream 404211 83635307 ~ 83661963 (-)
LOC110524681 LOC106560421 coding downstream 466452 83584736 ~ 83599722 (-)
scp2b LOC106560430 coding upstream 1006 84121349 ~ 84138828 (-)
magoh LOC106560432 coding upstream 31435 84151778 ~ 84157364 (-)
LOC110524694 LOC106560433 coding upstream 37794 84158137 ~ 84173653 (-)
LOC110524696 NA coding upstream 115342 84235685 ~ 84238143 (-)
trnar-acg-4 NA coding upstream 189587 84309930 ~ 84310002 (-)
G448445 NA non-coding downstream 158103 83907783 ~ 83908071 (-)
G448422 NA non-coding downstream 174816 83891121 ~ 83891358 (-)
G448420 NA non-coding downstream 176151 83889789 ~ 83890023 (-)
G448418 NA non-coding downstream 179203 83886712 ~ 83886971 (-)
G449141 NA non-coding upstream 8209 84128552 ~ 84128880 (-)
G449145 NA non-coding upstream 15581 84135924 ~ 84141100 (-)
G449168 NA non-coding upstream 59534 84179877 ~ 84208263 (-)
G449186 NA non-coding upstream 67396 84187739 ~ 84220997 (-)
G449178 NA non-coding upstream 85941 84206284 ~ 84207157 (-)
G448452 NA other downstream 149533 83916136 ~ 83916641 (-)
G448411 NA other downstream 192866 83871602 ~ 83873308 (-)
G448079 NA other downstream 545901 83510353 ~ 83520273 (-)
G447993 NA other downstream 746459 83315161 ~ 83319715 (-)
G447220 NA other downstream 1674950 82390655 ~ 82391224 (-)
G450676 NA other upstream 1222445 85342788 ~ 85343072 (-)
lurap1 LOC106560455 other upstream 1325338 85443496 ~ 85472422 (-)
G450752 NA other upstream 1366499 85486842 ~ 85487158 (-)
G450957 NA other upstream 1757390 85877733 ~ 85878974 (-)
G451271 NA other upstream 2428495 86548838 ~ 86549878 (-)

Expression


Co-expression Network