magoh (LOC106560432)


Basic Information

Item Value
gene id magoh
gene name LOC106560432
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 84151778 ~ 84157364 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604552.2
CGACCATTCATATGCCGTAACAAAAAAATCGCCACAGCACGCATGCGTTTTGTGTTTTGCGAAATAACGTTTAGTTGGAGGTGTGCTTTCGTTGATTCCGATTCTCACAGACTCTGTAAACACTGCATTTGCGGTTTATAATGTCAACAACGGACTTTTATTTGAGATATTATGTCGGGCACAAGGGCAAGTTTGGACACGAGTTCTTGGAATTTGAGTTTAGACCGGACGGTAAACTGAGGTACGCGAACAACAGCAACTACAAGAATGACGTCATGATCAGAAAAGAGGCCTATGTACACAAGAGTGTGATGGAGGAACTGAAGAGGATCATAGATGACAGTGAGATCACCAAGGAAGATGATGCATTGTGGCCGCCCCCAGACAGAGTGGGCAGACAGGAGCTGGAGATCGTCATTGGCGACGAGCACATTTCCTTCACAACTTCCAAGATCGGTTCCTTGATTGATGTCAACCAGTCAAAGGACCCAGAAGGCCTCCGCGTGTTCTACTACCTGGTTCAGGATTTGAAATGTCTCGTCTTCAGTCTCATTGGACTACACTTCAAGATCAAGCCCATCTAAGAggggatgttttttttcttttgggAAATGTTTTAATTTCATTTTTTGATTCATGTATGATTACATTTGTACATTTGCTTTTGATCGatcagtattttttattttaaataaatgatTGGAAAAATTCCAAATGTTTTAA

Function

NR:

description
PREDICTED: protein mago nashi homolog

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006417 regulation of translation biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0051028 mRNA transport biological_process
GO:0016607 nuclear speck cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12877 MAGOH; protein mago nashi

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604552.2 True 723 mRNA 0.41 5 84151778 84157364

Neighbor

gene id symbol gene type direction distance location
scp2b LOC106560430 coding downstream 12950 84121349 ~ 84138828 (-)
podn LOC106560429 coding downstream 31435 84066174 ~ 84120343 (-)
LOC118964672 NA coding downstream 60306 84090546 ~ 84091472 (-)
LOC118964673 NA coding downstream 61371 84088992 ~ 84090407 (-)
LOC110522893 LOC106560472 coding downstream 254790 83879999 ~ 83896988 (-)
LOC110524694 LOC106560433 coding upstream 773 84158137 ~ 84173653 (-)
LOC110524696 NA coding upstream 78321 84235685 ~ 84238143 (-)
trnar-acg-4 NA coding upstream 152566 84309930 ~ 84310002 (-)
LOC110522894 NA coding upstream 166616 84323980 ~ 84326565 (-)
LOC110524701 LOC106560440 coding upstream 169467 84326831 ~ 84349222 (-)
G449145 NA non-coding downstream 10678 84135924 ~ 84141100 (-)
G449141 NA non-coding downstream 22898 84128552 ~ 84128880 (-)
G449074 NA non-coding downstream 60902 84089855 ~ 84090876 (-)
G448445 NA non-coding downstream 243707 83907783 ~ 83908071 (-)
G448422 NA non-coding downstream 260420 83891121 ~ 83891358 (-)
G449168 NA non-coding upstream 22513 84179877 ~ 84208263 (-)
G449186 NA non-coding upstream 30375 84187739 ~ 84220997 (-)
G449178 NA non-coding upstream 48920 84206284 ~ 84207157 (-)
G449185 NA non-coding upstream 53445 84210809 ~ 84211925 (-)
G449177 aldh9a1 non-coding upstream 60589 84217953 ~ 84219181 (-)
G448452 NA other downstream 235137 83916136 ~ 83916641 (-)
G448411 NA other downstream 278470 83871602 ~ 83873308 (-)
G448079 NA other downstream 631505 83510353 ~ 83520273 (-)
G447993 NA other downstream 832063 83315161 ~ 83319715 (-)
G447220 NA other downstream 1760554 82390655 ~ 82391224 (-)
G450676 NA other upstream 1185424 85342788 ~ 85343072 (-)
lurap1 LOC106560455 other upstream 1288317 85443496 ~ 85472422 (-)
G450752 NA other upstream 1329478 85486842 ~ 85487158 (-)
G450957 NA other upstream 1720369 85877733 ~ 85878974 (-)
G451271 NA other upstream 2391474 86548838 ~ 86549878 (-)

Expression


Co-expression Network