znhit6 (znhit6)


Basic Information

Item Value
gene id znhit6
gene name znhit6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 84880003 ~ 84933122 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604591.2
TTTTGTGCATTGTCAAGACAAACCGGAATACATCCGTCACATATTTTTCTCCACGTATAGCGGAAGACGGTACACTTCAGACTGCTTTGATTGAAACAGAGCTTCGAGAGTAATTTCTAGAAATGTGTACAAGTATGCTGCCTTCGGTGGATACAGTCGCAGCTGCTGAAAGCCACGTCGAGAATGACCGTCTGGGAGACGAACTCAAAGGAAACAAAATAAAACTATCCCTGGCAAATTGTGGTGTGTGTGGCTCTGAAGTGGCGAATTATAGATGTCCCGGCTGCCTCAAACACTCGTGCAGCTTGCCCTGTGTGAAGAAGCACAAAGAGGAGTCAGGATGCAGTGGAGTTCGAGATAAGACTGCCTTTGTGGCCCTGTCCAAGATGGATGAGATGAACCTACTCAGCGACTACAGGTTCCTTGAGGACACGGGGAGGCTGGCAGACAGCGCCAACAGAGATTCCCTGGTCCGCGGCCCTCCTGTTAACTTTAGAGCTAAGAGACTGACAGCCCAGGCGAGGAGGCTGAACATCACGTTGAGGTTCCTTCCCAACACATTCACCAAGAGCAGAGAGAACTCCACCATCTGTCTCAAGAAGGAGAATCGTTTCCTATGGCACCTGCAGCTCCTGTTCCCTCAGAGCAGCTCAGAGTTCACTGAGAGAAGgGTGTCCGATGACCAAACACTTAAACAGATCCTCACCCCCTACATCCACCCTACAGAGTCTGAGCCAGTGAGACGACAAAAGTTGAAGATGTACGTCCACAGCCCATTTGATCACATCAGGGTCTTCATGAAGGCTGAGGGCAGGAAGGCCAACTCTGTGAGgtATCAAGAGCTGGATGTGGCAAAGACCCTGAAGGAAAACTTGAAGTTCAAACTTGTGATTGAGTACCCATCGCTACACATTGTTCTCAAGGACCACTGCCACGACTACCCACTGAAAGGACCAGTGGAGCCTGTGTTGGCCCATGGCAGTCCCATGATGGAGGGGGCATGGCGGGGTAACGGtcggagagaggaggggaggtcaGAGGTCTTACAGCCCCAACTGGGGCCACCCTTCCTGGGAAGCTCTCCTGAGACTGACCCACCCAAGACGAAAAGAGCCAAGAGAGAACCAGAGGAACTTGAGGATGGGGAGATTGgagatggtgatgatgatattGAAGCTGATAAGATGGTAAAAGAGATTGTTGTTGCCcatggtgatgatgataatggGGATGATGAGATGCCAGTTGATGGTTTCCATGGTGACTGCCTAGGTGATGACAACCCAAATGATGGTAATAACCATGTTGATACCCATTCTGGTGGTTGTTGTATTGGCGATGCAATGATTGCTGCTACTGAAACAGTTGATGACAAAATCAGAGGGGACCCAGAGAGAGTAAGGCAATGAGCCAGAACCTGCAGTCTGTTAATCTCTTGAGCCATTTCCCAgtcaataataatgataatattaaTATTGATCATGGTGCTAATGGTAATGACACTGGGTTTGATGTCAGTAAAAAATTATGTTAAAGATACTAGTGAAAATACTGAAGAGTTGGAAGCAGAGGGAGATTGAGTCTTGGCATGTTTTCTTTATGTAATCAGAAGTGATTCAGTTGGACCTACTTATAAAAATGTCCTTGTTGCATTATTTACTCTTATGTAGTGGTTATTTCAACAGCTAATTGGATTTTATCGGCTAACAATGTTAATTTGTTTTTTTGTCATCCTTTTTATTTGATTCTGTACATTATCAATTGAGATGCTTTcttaaatcaaaaataaatacatgaaacATGAA

Function

symbol description
znhit6 Predicted to enable metal ion binding activity. Predicted to be involved in box C/D snoRNP assembly; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and snoRNA localization. Predicted to be part of pre-snoRNP complex. Predicted to be active in nucleus. Orthologous to human ZNHIT6 (zinc finger HIT-type containing 6).

NR:

description
box C/D snoRNA protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604591.2 True 1805 mRNA 0.46 10 84880003 84933122

Neighbor

gene id symbol gene type direction distance location
ddah1 ddah1 coding downstream 17844 84709932 ~ 84862159 (-)
LOC110524711 cssa10h1orf52 coding downstream 182060 84693595 ~ 84697943 (-)
syde2 syde2 coding downstream 209545 84586021 ~ 84670458 (-)
mcoln3b LOC106560446 coding downstream 348692 84520767 ~ 84531311 (-)
LOC110523024 fndc7 coding downstream 460681 84393650 ~ 84419322 (-)
LOC110524715 col24a1 coding upstream 884 84934006 ~ 85175437 (-)
LOC118964676 NA coding upstream 167126 85100248 ~ 85101922 (-)
LOC118964733 NA coding upstream 502007 85435129 ~ 85443236 (-)
lurap1 LOC106560455 coding upstream 510374 85443496 ~ 85472422 (-)
LOC110524719 ttc4 coding upstream 569845 85502967 ~ 85511477 (-)
G449522 NA non-coding downstream 12512 84867262 ~ 84867491 (-)
G449512 NA non-coding downstream 36844 84831205 ~ 84843159 (-)
G449412 NA non-coding downstream 274873 84604918 ~ 84605130 (-)
G449408 NA non-coding downstream 279442 84600360 ~ 84600561 (-)
G449403 NA non-coding downstream 283690 84595287 ~ 84596313 (-)
G450494 NA non-coding upstream 39666 84972788 ~ 84973196 (-)
G450525 NA non-coding upstream 114124 85047246 ~ 85047496 (-)
G450528 NA non-coding upstream 118818 85051940 ~ 85053338 (-)
G450640 LOC106560454 non-coding upstream 346202 85279324 ~ 85280531 (-)
G450643 LOC106560454 non-coding upstream 347412 85280534 ~ 85292644 (-)
G448452 NA other downstream 963362 83916136 ~ 83916641 (-)
G448411 NA other downstream 1006695 83871602 ~ 83873308 (-)
G448079 NA other downstream 1359730 83510353 ~ 83520273 (-)
G447993 NA other downstream 1560288 83315161 ~ 83319715 (-)
G447220 NA other downstream 2488779 82390655 ~ 82391224 (-)
G450676 NA other upstream 409666 85342788 ~ 85343072 (-)
G450752 NA other upstream 553720 85486842 ~ 85487158 (-)
G450957 NA other upstream 944611 85877733 ~ 85878974 (-)
G451271 NA other upstream 1615716 86548838 ~ 86549878 (-)

Expression


Co-expression Network