XLOC_000023 (mrpl39)


Basic Information

Item Value
gene id XLOC_000023
gene name mrpl39
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 532766 ~ 591331 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000050
GCTTACCTTGCCCCCGAGTACACGCGCATGCGCACTGCAGTTCCCGCTTTGAGTCCTGTGGCGGGAGTATTGAGGAGGAGACACTGGTCTGGCGGATGAGGAAGAGCTGAGTTTACACTGCATTCATTACTGAGttTTAAAGATGAAGCCAGCGCGAGGGTCTGGAAGGGCCTCCACACGGGGCCCCAGAGGAGCTGCGGAGAGAAAAGCACACAAAACACGCCAAAAGTCCATCAGCCGTGCTGAAGGCCCACATCCTCATCTGTCTCAGAAGAGCAGCGCGATGGTTGGAAAGAGTAAAAATCAGAGAAACTGGAAGCCGCTGACCAAGTCCTCCATACTGGCCCTGAGGAACATGTTCGATATGTCCATTCTATCTGTGCTCACACTGAAAACCAAAGAGAAAGAGGAATCACAGAAACATCTCAACATCATTAAAGACCGGTTTCTGGCGAAGTGTGCGCAGCTTTCTGTTCCTCCGAGGAAACGTGGAGACATGATGAGTGCGTCGCGTCAGTTCAGCACAGAGAGTAAGAAGTCTGAACATGGAAAGAAGACGCTCCAGGCTCTAGAGGAGAACATGAGCTCGATTGTCAGCACTCTTGAGGAGATGGAGGTGAAGATGGAGAGGCTGCAGGAGAAATGCAGGATAATGAGCAGCAGAAtagaggaggaagaggaaaaaGCACAGGAGTTTCTTCAACTGTCAGAAGAAACAGTCCTGCATCTGCCAGCATTACAGTCTCGCTCAGCCGATGAGCCGACGCTACAGGAGCAGCTGATGCAGACCGTCCCCAATCCTCCAGCAGTGGTGAAGGCTCTACATCCGACTCCAGTTCTGGAGGACGTGAGGGTGTTTCTGGAGCTCGCACATAAACAGGTGGATCATGCAGAAAAAGCAGCTCACAATGACTAAACCCTGGACTGAACATCACAGACACGGCTGATG
>TCONS_00000051
TCCCGCTTTGAGTCCTGTGGCGGGAGTATTGAGGAGGAGACACTGGTCTGGCGGATGAGGAAGAGCTGAGTTTACACTGCATTCATTACTGAGttTTAAAGATGAAGCCAGCGCGAGGGTCTGGAAGGGCCTCCACACGGGGCCCCAGAGGAGCTGCGGAGAGAAAAGCACACAAAACACGCCAAAAGTCCATCAGCCGTGCTGAAGGCCCACATCCTCATCTGTCTCAGAAGAGCAGCGCGATGGTTGGAAAGAGTAAAAATCAGAGAAACTGGAAGCCGCTGACCAAGTCCTCCATACTGGCCCTGAGGAACATGTTCGATATGTCCATTCTATCTGTGCTCACACTGAAAACCAAAGAGAAAGAGGAATCACAGAAACATCTCAACATCATTAAAGACCGGTTTCTGGCGAAGTGTGCGCAGCTTTCTGTTCCTCCGAGGAAACGTGGAGACATGATGAGTGCGTCGCGTCAGTTCAGCACAGAGAGTAAGAAGTCTGAACATGGAAAGAAGACGCTCCAGGCTCTAGAGGAGAACATGAGCTCGATTGTCAGCACTCTTGAGGAGATGGAGGTGAAGATGGAGAGGCTGCAGGAGAAATGCAGGATAATGAGCAGCAGAAtagaggaggaagaggaaaaaGCACAGGAGTTTCTTCAACTGTCAGAAGAAACAGTCCTGCATCTGCCAGCATTACAGTCTCGCTCAGCCGATGAGCCGACGCTACAGGAGCAGCTGATGCAGACCGTCCCCAATCCTCCAGCAGTGGTGAAGGCTCTACATCCGACTCCAGTTCTGGAGGACGTGAGGGTGTTTCTGGAGCTCGCACATAAACAGACGGCGCTGTTGTGATGCATGTGAAGGAAAAGTGAGCTGTAGATCATGGCTACCGCTCGGACTGTCGGTCAGATGCTTCAGCGCCgTATGGTGTCCAGCGCTGCAGCTGCTCCTCGTCTGTCGTCTGCAGCGGTTCTGGCTCAGCGCAGTGCTCAGTTCTCCAGAGAGCAGCTCCGCCAGCGAGCGCTGCAGCCGCGGGTGGAGAAGGTGGAGGTGCAGCTGCAGGGGCCGGGTCTGCAGGGGACGCTGCTGGTGATGAACAGAGGCCTGTCTACACCATACAGCTGCGCACGCCACCTGTCCGAGTGGCATGTGAACAGCAGTGCGCTGGCACTGGTGGACGGTCAGCCGTGGCACATGCACAAACCCCTGACCCGCTCCTGTGAGCTCACACTGCTGACCTTCAGAGATGCAGACCCACAGACACTCAACCAGgcgtACTGGCGCTCCTGTGCGGCTCTTCTGGGTCTCGTCCTGGAGTCAGCCTTTAAGGATCAGTTCAGTGTCGAGCTGCTCAAGACTCCTGAAGTGCCAGTGACGGCCGGTGCTTTCTGCTGTGATCTGCTTCTGGATCCGCTTCTGGACTCCTGGAAGCCCACAGAGGAGAATCTGCGCAGTCTGACGCGTGACGCGCTGCAGATGATCAGCAGAGATCTGCCCTGGGAGCCGCTGGAGGTTTCAGCTTCTCTGGCCCTGGAGATCTTCTCTCAGAGCaggtgtaaACAGGAGGAAGTTGAAGAAGCAGCGGCTCAGAGTCAGAACGGGACGGTGACACTATACAGgtgtggAGATCATGTGACGCTGAGCTCCGCCCCACTGGTGTCCCGCACGGGTCTTTGCTCTCAGTTTGAGGTCACGTCGATACACACACTCTCAGAACACACACGCGGAGTCCAGCGCAGAGCTCAGGGGCTCTCACTGCCCGTCAACCTTACTGCTCATCATACAGTCTGGAGGAAGCTGCGGAAAAGAGCAGAGAGActgGTGGAGCTTCCCTCATCTTCAACAGAGGCTCCTCCTTTCAACACAGAGACTCCACCTGCTGCCTCTGTGACTCCACCCCCTCTACCATAATCCCCGCCCCCTCTCTCAGCATTCAGTGTTTGTATGATATTGTTGAATAAACGTGTTGACCACAT
>TCONS_00000052
AGACAACAAACAGACCAAACACACTCTTGTTATGAACACATGGGTTGTTTTTACATGTTAGTCACCGAATATCTTGCCAAAAATCTGTTTGCTTGCATATAAATGCCATCATTTAAACCAGATCAAAGACGATGGTTGGAAAGAGTAAAAATCAGAGAAACTGGAAGCCGCTGACCAAGTCCTCCATACTGGCCCTGAGGAACATGTTCGATATGTCCATTCTATCTGTGCTCACACTGAAAACCAAAGAGAAAGAGGAATCACAGAAACATCTCAACATCATTAAAGACCGGTTTCTGGCGAAGTGTGCGCAGCTTTCTGTTCCTCCGAGGAAACGTGGAGACATGATGAGTGCGTCGCGTCAGTTCAGCACAGAGAGTAAGAAGTCTGAACATGGAAAGAAGACGCTCCAGGCTCTAGAGGAGAACATGAGCTCGATTGTCAGCACTCTTGAGGAGATGGAGGTGAAGATGGAGAGGCTGCAGGAGAAATGCAGGATAATGAGCAGCAGAAtagaggaggaagaggaaaaaGCACAGGAGTTTCTTCAACTGTCAGAAGAAACAGTCCTGCATCTGCCAGCATTACAGTCTCGCTCAGCCGATGAGCCGACGCTACAGG
>TCONS_00000054
AAACTCGCTTCCCCTGATCGCACGGAATGTTTTTATCGCTGCACTCGGAAGCAGCGCAAGCATGTCGCCGATCTCTGACAGTTAGCGACTTGATTTTTCTACGTTTATTTGTGTAGTGTATGTTTATTCTGTTAACATTGTGCAGGAAAAGTGAGCTGTAGATCATGGCTACCGCTCGGACTGTCGGTCAGATGCTTCAGCGCCgTATGGTGTCCAGCGCTGCAGCTGCTCCTCGTCTGTCGTCTGCAGCGGTTCTGGCTCAGCGCAGTGCTCAGTTCTCCAGAGAGCAGCTCCGCCAGCGAGCGCTGCAGCCGCGGGTGGAGAAGGTGGAGGTGCAGCTGCAGGGGCCGGGTCTGCAGGGGACGCTGCTGGTGATGAACAGAGGCCTGTCTACACCATACAGCTGCGCACGCCACCTGTCCGAGTGGCATGTGAACAGCAGTGCGCTGGCACTGGTGGACGGTCAGCCGTGGCACATGCACAAACCCCTGACCCGCTCCTGTGAGCTCACACTGCTGACCTTCAGAGATGCAGACCCACAGACACTCAACCAGgcgtACTGGCGCTCCTGTGCGGCTCTTCTGGGTCTCGTCCTGGAGTCAGCCTTTAAGGATCAGTTCAGTGTCGAGCTGCTCAAGACTCCTGAAGTGCCAGTGACGGCCGGTGCTTTCTGCTGTGATCTGCTTCTGGATCCGCTTCTGGACTCCTGGAAGCCCACAGAGGAGAATCTGCGCAGTCTGACGCGTGACGCGCTGCAGATGATCAGCAGAGATCTGCCCTGGGAGCCGCTGGAGGTTTCAGCTTCTCTGGCCCTGGAGATCTTCTCTCAGAGCaggtgtaaACAGGAGGAAGTTGAAGAAGCAGCGGCTCAGAGTCAGAACGGGACGGTGACACTATACAGgtgtggAGATCATGTGACGCTGAGCTCCGCCCCACTGGTGTCCCGCACGGGTCTTTGCTCTCAGTTTGAGGTCACGTCGATACACACACTCTCAGAACACACACGCGGAGTCCAGCGCAGAGCTCAGGGGCTCTCACTGCCCGTCAACCTTACTGCTCATCATACAGTCTGGAGGAAGCTGCGGAAAAGAGCAGAGAGActgGTGGAGCTTCCCTCATCTTCAACAGAGGCTCCTCCTTTCAACACAGAGACTCCACCTGCTGCCTCTGTGACTCCACCCCCTCTACCATAATCCCCGCCCCCTCTCTCAGCATTCAGTGTTTGTATGATATTGTTGAATAAACGTGTTGACCACATGTc
>TCONS_00000055
GGAAGCAGCGCAAGCATGTCGCCGATCTCTGACAGTTAGCGACTTGATTTTTCTACGTTTATTTGTGTAGTGTATGTTTATTCTGTTAACATTGTGCAGGAAAAGTGAGCTGTAGATCATGGCTACCGCTCGGACTGTCGGTCAGATGCTTCAGCGCCgTATGGTGTCCAGCGCTGCAGCTGCTCCTCGTCTGTCGTCTGCAGCGGTTCTGGCTCAGCGCAGTGCTCAGTTCTCCAGAGAGCAGCTCCGCCAGCGAGCGCTGCAGCCGCGGGTGGAGAAGGTGGAGGTGCAGCTGCAGGGGCCGGGTCTGCAGGGGACGCTGCTGGTGATGAACAGAGGCCTGTCTACACCATACAGCTGCGCACGCCACCTGTCCGAGTGGCATGTGAACAGCAGTGCGCTGGCACTGGTGGACGGTCAGCCGTGGCACATGCACAAACCCCTGACCCGCTCCTGTGAGCTCACACTGCTGACCTTCAGAGATGCAGACCCACAGACACTCAACCAGGTAGACTCCCTCACCACTAAACAGATTATCACAATCAGAACAACTGCTGGACGTGAGTTTAAAGGGGACAGATTATGCTGAAATCACTTTAATAAGGAGTTACatgtgagcagtgtgtgtgtgtatctccagcagcctctaatgATGAACATGAACtaattgtgtttattataacCAGACTTGATGCAGACACACTGtgattggcattctccctttgtacgcatcatcagaggggaaagccccgcccactagtgcccatctctccatctcattagcatctcc

Function

symbol description
mrpl39 Predicted to enable nucleotide binding activity. Predicted to be located in ribosome. Predicted to be active in mitochondrion. Orthologous to human MRPL39 (mitochondrial ribosomal protein L39).

GO:

id name namespace
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-6520 Predicted to enable nucleotide binding activity. Predicted to be located in ribosome. Predicted to be active in mitochondrion. Orthologous to human MRPL39 (mitochondrial ribosomal protein L39).

Ensembl:

ensembl_id ENSDARG00000041570

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000050 False 949 mRNA 0.52 9 532766 549521
TCONS_00000051 False 1978 mRNA 0.55 20 532807 591328
TCONS_00000052 False 621 processed_transcript 0.46 6 537589 546217
TCONS_00000054 False 1261 mRNA 0.57 10 580642 591331
TCONS_00000055 True 790 lncRNA 0.53 3 580688 586501

Neighbor

gene id symbol gene type direction distance location
XLOC_000022 mrpl16 coding upstream 337 524388 ~ 532429 (+)
XLOC_000021 txnl4b coding upstream 14690 513986 ~ 518076 (+)
XLOC_000020 blzf1 coding upstream 27146 494297 ~ 505620 (+)
XLOC_000019 tpp2 coding upstream 89007 418869 ~ 443759 (+)
XLOC_000018 NA coding upstream 174204 355481 ~ 358562 (+)
XLOC_000025 jam2a coding downstream 3253 594584 ~ 608247 (+)
XLOC_000026 NA coding downstream 203645 794976 ~ 911551 (+)
XLOC_000027 n6amt1 coding downstream 370276 961607 ~ 970951 (+)
XLOC_000028 NA coding downstream 424481 1015812 ~ 1033638 (+)
XLOC_000029 CR450787.2 coding downstream 627360 1218691 ~ 1218805 (+)
XLOC_000011 NA non-coding upstream 375484 156792 ~ 157282 (+)
XLOC_000030 NA non-coding downstream 723958 1315289 ~ 1342237 (+)
XLOC_000031 NA non-coding downstream 767400 1358731 ~ 1360831 (+)

Expression


Co-expression Network