LOC110524715 (col24a1)


Basic Information

Item Value
gene id LOC110524715
gene name col24a1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 84934006 ~ 85175437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978599.1
ctgcgctctctctctatctgtctgttggAGACCACTCAATAGAAAGCATCGAACTCGGATTCCTCTTATGCCactgtaaatatcacatttaaatactATATTTCTTTGTCGCACTGCTCTTTCTCGTCATACATTGATTTAAATCTACAGTCACCAGCCTACTTGCGTGCGCGCCTCTTTGGTAGGTCGAGAGAGAAAATAATCACTGTGCTCTGCAAACCGCAAAGCAAATGAGTTGGGGGAGAAGTTTTGAGTGAGTGGGAAAGCCGTGCTTGCTCCTTGGGCTGCATACAATGAGGAAATTCTGAGGTGGCATTCTTCGTTCAGTTACGCTTCCTTTGGTTGTATGTAACTAATGGCTAGCTCATGAACCTGGATCCTCTTGCGTGGAATTCTGTTTTCACTTAGAACTCTGCTGCCTGGACAAATGCATACAAATGCATTTAGGAGCCCAACGGACAAGGAGTGGACACGTTTCTCCAACAGCAATAACGAGAACCCTCCTCTTGCTCCTGTCAATATGCACAGCAGTACTGTCTGGAGAAGAAGACTACCGAGCACAAGGTGTCGATATCCTCCATTGGCTGGGCCTCACCGGCAGCAGAGACACCCTCTCCCCAGGGACcagctcctcttccccctcctcctcccttcactctccttcttcctctcccccAGGAGCCGGGGTCCTACTCAGCCCGGACGCCCACATTGAAGCCGCCACGGGGGGTCTGTTCCCGCCGGAGCTCGCTGAGGAGTTTTCTGTCGTGGTTAGCCTAAGCTCCTGGCGAGCGAACAATGCTTTCCTTTTCAGTGTGCGTGACGGCAGGGACAAGCTGCAGTTTGGCATCCAGCTGCTGCCCAGGAAGGTGGTGGTGTACACCGGCGAAAAGGCCTCTGTCTATTTCACCTACAACGTACACGACGGGTGGCAGCACTCTTTCGCCGTGAGCGTGCGGCCGCGCTCAGTTTCATTCCATGCGGACTGCGGGGGGGTGCAGCAGCGAGAACAGACGCTGACCCGGGCACATGTGCTGGGGTCCGGATCCAGAGGCCTGCTCACCCTAGGAAGGATGAAGTCTAAAGCAGCCCAGTTCCATGGCCTCATATGCCAGCTGGACATCTACCCCTCAGCCCAGGCTGCTGCGCATTACTGCCACTACCTTAAAAAACAGTGCCGGCTGGCTGACACTTTCCGATCGCCACCGCCACCCTCCAGCTTGGATATGGAGGTTTCTGGCTCCCTGGCTTTCTCCCCTATTCCTCCTTCTCCAGCATCCCAGACTGTGGAGGTGCCCCTCTTTCTGGCTGTAGACTCCCAGCAGTCCACCAACCTGGCCAGATCagcccccagccccagcccctccCTGGAAGGGTCTGGAATACCGTATTTAAGCCCCTCAGAGCAGTCTCACCTGGGGGTCAGGACCCAGACCCAGAGCTTCCTGCTGGAGCACCTCACCTCTATCCATACACCCACAGCAGGCCCCATTGGCTCGTCCTCAGGCACTCTAAGTGGGCTGAAGGCCATGGGCATCACACACAGGAGTACCAACTCCAGCTCCGGATCCAGCCCAACAGGGGGCTCCACCAGGCAGTCTCCCCAGTCTGAGAatgacacagaggaggaggaggaggaggagaaggaggagaggagcccCAGTAGGCCCCAACAGGTCACCACAGCCACCCCAGGCCTGATCTCCCATGTCAGGCAGAGCCGCTTGAAGGAGGGCCTGAGGAACAGCTCCAGGCCTAGAGACTCTCGGCCCCAGCCCACTAACCACCTCGTGGACACAAAGCTCAGACCCAACAGCACCACCCTGTACCGGGAGAACCAGGTGGACACCTCAGAGGAGCATGGCCAGGAAGGGGCCTACGATGTGGGCATGGAAGGCTACGACTATGGATACGAGGAACCAGACTACTTCTACAGAGACTATGACGAGGCTTTTCCTGGACCCAAAGGAGACCCAGGTCCTCCGGGTCCTCCTGGCCCCCGGGGTCTACCTGGTcctgctgggaggagaggagCTCGGGGTCCTACTGGTCCACATGGAAACCCTGGTTTGCCTGGTCCTCCTGGTACCAAGGGCTCCAAGGGCGATCCAGGACTGTCCCCAGGTCAGGCCCCGCCAGGAGACAAGGGTGACAGAGGTCCACAAGGTGTTCTAGGTCCAGACGGGTTCGCAGGTCCAATGGGTCCTAAGGGCTATCCAGGGCCATCAGGACAGCCAGGGGAACAGgGCATACCAGGACTCCCAGGAGTGACTGGGGCTGCAGGTTACCCTGGCAGGCAGGGTTTGGCTGGGCCAGAAGGTAACCTAGGTCCTAAAGGTGTACGTggTTTCATTGGTCCTCCTGGTATAGCTGGTCCACCAGGGCTAGAAGGGGAGAGAGGTATTCCTGGTCCGGTTGGGAAGAATGGTCCCAAAGGAAGACAGGGAGTTGTTGGGGGTGTTGGTGAAAGGGGTTCTCCTGGTCCTGATGGTGACCAGGGGCTTGCTGGAGGTGCTGGCATGGGGGGCTTTCCTGGCCTAAGGGGAGACCCAGGGCCTGAGGGACAGCGAGGACTGACTGGCATAGTGGGAACTATGGGCCTGGCGGGAAAAGCGGGGCTGCCTGGATTGAAAGGTGATAAGGGCGAACCTGGACTAAGGGGTGAACCGGGAGAGATGGGTTACCAAGGTGACAAGGGTGCTGCTGGCTTGTCTGGACCTCCTGGACTCCGTGGGAAACCAGGTCCACCTGGTAAAATGGGTGAGATCGGACCACAGGGACCTCCTGGCCCACCAGGTCCTGAGGGTTTTCCTGGAGACATCGGTGTGCCAGGTCCCAACGGCCCTCCTGGACCTAAGGGACTCCTAGGTACCAGAGGGCCACAAGGACCCCCAGGGCCAAAAGGAACAGAGGGTGATGAGGGACACCTTGGCCCACTTGGCGGCCCTGGCACCACTGGGAGAGTTGGAAGGAAAGGCTACATAGGGGAACCTGGACCTGAGGGACTGAAGGGGGAGACGGGGGACCTTGGCGGCATTGGAAAAAATGGACCGCAAGGTCCAGCAGGCCTGATCGGTACGTCAGGGGGAGCTGGAGATCCTGGTGAAAAGgGTGACCGTGGTCCTGCAGGTCCGTTGGGTCCTCCTGGGGAGATGGGGTCCAGGGGGTATCCAGGCTTACCAGGCGGACCCGGCGATGTAGGTCTGCAAGGCCCATTTgGTCCTCAGGGGCAGAGGGGTATACCAGGGGTCCCGGGGCCAAAGGGCAGAAGGGGGCCGAGGGGTGCAGACGGTCCACTGGGGGAACCAGGGCCTGAGGGCACCAAGGGAGAGCAGGGGGAAGGTGGAAAGAAAGGGGAGCCTGGGTTCATAGGTAAAGCTGGCGGTCCAGGGGAGAGAGGCCTATCAGGGAAACCTgggaAAGCTGGGATCCCTGGCAGCACAGGAGAGAGGGGTGCCCATGGTGAACCAGGGCCCAAAGGACCCGCGGGGGACGCAGGACCTGACGGAGAGCAAGGACATGAGgGAGCTCCTGGCGGAGAGGGGGAGCCAGGTCCAGTTGGAGAACCTGGGATAAAGGGCCACGGGGGGCCggttggaggagagggggaacaaGGACAGCAGGGAATGAGAGGTCTTCCAGGTCCTGCTGGTGAGGACGGGCCCCAGGGAAAAGATGGACCAAAGggAGAGCCAGGTGACTGTGGGCCCATGGGTGAGGCAGGGgacagggggatagagggagaccCTGGGCCTCCTGGAACCACCGGAGTGGCTGGAAAACAGGGTTTCTCTGGTCCAGAGGGGAAACAGGGTCCCCCCGGCAACCGAGGACGGCAGGGCAAGAAGGGTGAGGCTGGCAAACCAGGTCCTATCGGTGAGACAGGGGACATCGGGGACATCGGCCAAGAAGGAGGGATGGGACTGAAAGGAGCCAGAGGAACCATAGGCCCTGTGGGTCATCCAGGAGTTATGGGGCCTGAGGGGATGCCTGGAATTGCAGGATACACAGGCCATGCCGGcaaaccaggacccataggaccaCCTGGACCCAAAGGTGAAAAGGGTTACCCTGGAGAAGACAGTAAGACCCCAGGACCTGCCGGGCCACTAGGTGAACCAGGTCTCCCGGGTGAGCGAGGAGACCGCGGAGAGCCTGGAGATGAGGGATATCAGGGCCACACTGGCCTCACTGGACTTCGCGGGGCTGTTGGAGCACCAGGCCTTCCTGGAACACCAGGGGAATCCGGAGAACCGGGCCCGAAAGGAGAAATGGGAActcagggCTTCGAAGGGAAGAAAGGAGCGAGAGGCCTGACTGGGACCGCTGGTGTTGAAGGCGAAGTTGGTTTACTTGGACCCAGAGGCATGGAGGGATACGCTGGGCCTGATGGTCCTCCAGGATTGGTTGGGTTACCAGGATTTCCAGGAAAGACTGGGCGACAGGGCCAGCGTGGCACCGTGGGGCAGGAGGGGTCGGCAGGACTACCTGGTCCCAGAGGGGAACTTGGTCTGCCTGGGTTGGTCGGAGAGAGGGGGCCTGCTGGAGAGAAGGGGGAGACTGGCttggcaggagagagggggacccCAGGAATCAAAGGCATGGAGGGCTCATCCGGAGACCAAGGCAGGATAGGAGACCCAGGACTCAAAGGACAACCAGGGGAGCCGGGAGACCTGGGGATGATTGGCTTCTCTGGTTTTCCAGGACCTAAGGGACCAAATGGGGATTGGGGTTTCAAAGGCATACCTGGTCCTAAAGGTCCTGTTGGCATTCTGGGTTTCAGTGGACCTGTTGGACCAGAAGGGATGATCGGCCCAATGGGGAAACCTGGACCGAAGGGTCCAAGGGGAAGCCATGGGGAAATGGGACCCCAGGGGCCACAGGGACATCCAGGGCCCAGAGGCCCCCCTGGTGCTCCTGGCCCGACCAGACGAATCGAGTACAACTCTCTGTTTGAGTACAATGGTGCCTTGAGGACAGAGATCTACCAGAACACGGAGATGTCCCTCTCAGACCAGAATGCAGGGATCTTTAAGACCTTGCACTACCTGAGCAGTGTGATCGAGAGCATGAAGAAACCGCTCGGAACCCGGGAGAACCCGGCACGATTTTGCAAGGACCTGCTGGACTGCCAACAGAAGCTCTCTGACGGACTGTACTGGATCGACCCTAACCTGGGATGTCCGTCAGACACCATTGAGGTCTTCTGTAACTTCACGGCAGGCGGGcagacatgtctcctcccagTAGCCTCTAACAAGCTGTCGTTCGGTGTGCATAAGGTTCAGATGAAGTTCCTCCACCTCTTGAGCACAGAGGCCAGTCAAGACATTACCTTCCACTGTCTGAGTGACCCTCCCTTCAACCCCACAAACACCTACGGTGCTGACGACCCAGGACAGGAGTATCAGGCCAGACCACCAAGGTTTAGGGGATGGAATGGACAGATGTTTGAGGCAGACAGTCTACTTGAACCTCACATGCTACTAGACGAATGCAGGATCCAAGATGGCAGCTGGCACCAGTCACGCTTCTTCTTCCATACTCAGGACAGCTACGAGCTCCCCATCATTGATATACAGGAGCAACCTTTGTCACAGTCCAACGATCTGCGCCACCTCGAGGTGGGACCTGTCTGCTTCCTGTGAGGTCATTATCCATCGCTAGCCTGCCTGTCCAAAATATAAACTATAAAAAACGAGCATGGCATAAGCAGGCCAAAATGGCTGCTCACCAAACCAAAGAGAGATCTCTATAAGCCCAAGCAGAGTTGGTCAGGTCTGCTCCCCCACTTGGGAGACTCTTTATTGAGTGTTAGCGAGTGTCAAATGCCCTGTCCAATGGAATGGCAGACTTCTGTGGAAGAACTCAGTCCATAGCAAACTAGGCCAGCTTACAGTAAGATGGCCTCAGGAGAGCAGTGTATACCAATATTTATCAAATAAATGTGTAAAGTGTGTCTGTTTggtttttgtttttcaaaaggtgCTTGAGTTCGTTGGACCCTGAACTCAGGACAGGGCTCATCCACACAACACCGTCCTAAAACTCAAATCCTGTGCCTCCCTCCCTACTGCCCACCCccatcctccttctcccccatatTCACCCTCCCAGCCATCCTTAGAAGGGGCCTAGCTATCCGAAGGAAAGCTCTAGGGGCTTTGTAACAGGAATACTGTACAACAAAAGCTTCCTAAGAGTGCAATAGCTTGTGAATTAAGAGTGAGAGATTTCATATTGCAATTTCAATCAAAGGTCAACTGCCAGCTCAGACCgcaattttgtttatttttaatgtTTGAATCTGTTGTCCAACACAGCTGGATGTTTACACCTTGGGTAAGTCCAaaattgcaccatattccctatgtaatgcactagGTTTAACCAGGGCACATAGagctcaaatgtagtgcactatatcaggAATATGGTTCTATTTTGGACACTGCCCTTGAAAGATGGTGCTCTACCTCCTGCTTGTATGCCTTCTATAGGTGCTAGTGTCAAGTAATTCTTTGTCCTTATGTACCGGTTACATCAAGATCTGTTGTAAGAGTACTTATTTGAAATTTATATGAAACATTTGTTGATGAATTACATATTTTTTAGCTTTTACTCTTCATTTTATTTGGTAGGTGGTAACGTAACCTATCATTGGTGCTGCAACAGACACAAGAGCGTGAGACATCAGTGAGTTGTGAGACATTTTTCCTGTGTATATTTTGACATTATATTGTTGATTATTTATATCCTTTGTTTTTGTTCACATTACTGTACCCCAATAAATTATACTCTCAGAGATCTATTTGGTCAACTCCAACTTAGTCCAAATAACTATTTATGTAAAAAATTGTATTTGTATACTATGTACACACATTATGTGACTGTTCATTGTATATGTTCACATTCACTACAATGGGGGTTGATAGCTCATACTGGCAGCTAGCATAGGCCAGAGTCAGAACACATCAGAAATAGCAATGATCTTGTTCTTAAGTTATGTTACGTTGAAAAAAGTGTAATTAAATAAGTAAATGCTCTCAAGGAATAAAGTTAAAATTGtgtaaatatgaaatatattgacATTAAATAAATGAAATGTTTTAATCCCAAAA

Function

symbol description
col24a1 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in collagen-activated tyrosine kinase receptor signaling pathway and extracellular matrix organization. Predicted to be part of collagen type IV trimer. Predicted to be active in extracellular matrix and extracellular space.

NR:

description
collagen alpha-1(XXIV) chain

GO: NA

KEGG:

id description
K19721 COL5AS; collagen type V/XI/XXIV/XXVII, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978599.1 True 7124 mRNA 0.55 60 84934006 85175437

Neighbor

gene id symbol gene type direction distance location
znhit6 znhit6 coding downstream 884 84880003 ~ 84933122 (-)
ddah1 ddah1 coding downstream 71847 84709932 ~ 84862159 (-)
LOC110524711 cssa10h1orf52 coding downstream 236063 84693595 ~ 84697943 (-)
syde2 syde2 coding downstream 263548 84586021 ~ 84670458 (-)
mcoln3b LOC106560446 coding downstream 402695 84520767 ~ 84531311 (-)
LOC118964733 NA coding upstream 259692 85435129 ~ 85443236 (-)
lurap1 LOC106560455 coding upstream 268059 85443496 ~ 85472422 (-)
LOC110524719 ttc4 coding upstream 327530 85502967 ~ 85511477 (-)
sgip1a sgip1 coding upstream 356253 85531690 ~ 85652797 (-)
pde4ba pde4b coding upstream 506872 85682309 ~ 86031149 (-)
G449522 NA non-coding downstream 66515 84867262 ~ 84867491 (-)
G449512 NA non-coding downstream 90847 84831205 ~ 84843159 (-)
G449412 NA non-coding downstream 328876 84604918 ~ 84605130 (-)
G449408 NA non-coding downstream 333445 84600360 ~ 84600561 (-)
G449403 NA non-coding downstream 337693 84595287 ~ 84596313 (-)
G450640 LOC106560454 non-coding upstream 103887 85279324 ~ 85280531 (-)
G450643 LOC106560454 non-coding upstream 105097 85280534 ~ 85292644 (-)
G450671 NA non-coding upstream 162186 85337623 ~ 85337868 (-)
G450673 LOC106560414 non-coding upstream 163403 85338840 ~ 85339159 (-)
G450677 NA non-coding upstream 167925 85343362 ~ 85343680 (-)
G448452 NA other downstream 1017365 83916136 ~ 83916641 (-)
G448411 NA other downstream 1060698 83871602 ~ 83873308 (-)
G448079 NA other downstream 1413733 83510353 ~ 83520273 (-)
G447993 NA other downstream 1614291 83315161 ~ 83319715 (-)
G447220 NA other downstream 2542782 82390655 ~ 82391224 (-)
G450676 NA other upstream 167351 85342788 ~ 85343072 (-)
G450752 NA other upstream 311405 85486842 ~ 85487158 (-)
G450957 NA other upstream 702296 85877733 ~ 85878974 (-)
G451271 NA other upstream 1373401 86548838 ~ 86549878 (-)

Expression


Co-expression Network