LOC110524716 (LOC106560454)


Basic Information

Item Value
gene id LOC110524716
gene name LOC106560454
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 85271864 ~ 85283832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604594.2
TGGCAGATCACAGATCCTTCCCACACATCACTGAGTCCACCACCATGGCCTCCAAAGCAGCAGCTGTGTTGCTGCTGGTTTACCTGTCAGGATCTACATTTGGGATCAAGCTGACTGGAAATGGATACACTGACATTCTGATTGCTATCAACCCTGAGGTGCCTGAGGACCCAGTGCTCATCACACAAATCAAGGAAATGTTTAAAGAAGCCTCCAGACATCTACTCAATGCAACAAAGAAACATTTATATTTCAAGGAAGTCGCAATATTAGTGCCACCTAATTGGAATAAAGGAAATTACCCCAAAGCAAAGACGGAGGTCTACGATAAGGCCAATATAATAATTGATGAGCCAAATAAATTACATGGAGATCAGCCTTACACTCTGCAGTATGGTGAATGTGGATCTGAGGGCCGGTACATTCATTTGACTCCTGACTTCATGCTGAATGATGATGTCTCTAAATACTATGGACCCAGAGGTAAGGTTTTTGTCCATGAATGGGCACATCTAAGATGGGGAGTTTTTGATGAATATAATGAAGAAAAACCATTCTACCTGTCAGGTTCCATAATTGAGGCAACAAGATGTACCATAAACATTACAGGAAAGTACATCCACAAACATGACCAAAGGGACTGCACCACTGACCCTGTTACTGGGTTATACACCGAAGACTGTGTATTCTATCCTGACAAGCAACAGACAACCTCTGCATCTATCATGTACAATCAAGGCCTTAGTGCTGTAAAAGAGTTCTGTACAAAAGAAACTCACAACACTGAGGCTCCAAACATCCAGAACAGGCTGTGTGGTAACAGAGGTGTAGAGGAAGTTATCACTTCACTTTCTGTAGATGCCGGTGTGGCAGTTGTGCCAACACCACCAAGTATACTACCCACATTCACTGTGGTGCAGTGCCGGCAAAGGGTTGTCTGTCTTGTCCTTGATGTTTCAGGAAGCATGGCTGCAggttctagaATGTTGAACCTGAGACAAGCGGCAACGCTCTTCATACAGAAGATTGTTGAAGACCAAGCTTATGTTGGCATTGTACAATTTACAGCTACGGCTACAATTCGTGAACCATTGACTTTAATTGATGGTGAAGCGTCGAGAGATAAGCTTGCAGGCAGTCTGCCACTATCAGCTGGTGGAGGCACAGACATTTGTGCAGGTGTTAAGAAAGGTCTGGAGGTACTTgggggagatggagatggtgcaATGGGAGATGCAATCATATTACTAACTGATGGGGAATCAAGTATCAACTGTCAAAAAAGTGTTAATGAAAGTGGTGCAACTGTGCACACAATAACTCTTGGGCCAAATGCAAACATAGATGTAAAACAATTGTCAGACATATCAGGTGGTAAATATCACAATGCTGCTGATGGTGTGGATTCCAATGACCTTGTGGATATTTTTACTTCACACACAACATCTGATGGAAATCTGACCAAGCAGACAATCCAGCTTGAGAGCACTGGATTGAATATGATTGGTTGGTTTAATGGATCTGTATCCATTGACAGGACAATTGGAAACAAGACAAGCTTTTTAGTTATCTATGAAAGAAGTCCACCTGACATCCTTGTTTTAAGCCCCTTTACACGGACCTATGACACATCACATTTCAAACATGATGCTTCTGCTAAGACTTTAACGCTCGATATTGAAGGAACTGCTGAGACTGGAAAGTGGAAATACAGCCTACTAAATAAAGAGTCAACTGCCCAATCTATGTCAATGACTGTGACAAGTCGTGCTGTCAGTGACGCTATACCACCGGTCATGGTCAAAACCCACATGAGCCAACAGTTCAGCAACGGCAGCAAACCCATGTTGGTGTATGCAGAGGTCAACCAGAAAGGTGTTCCAGTGATTCTGGCAGATGTGATGGCCACACTGAAGTCTGATTCTGGGGACCAATATGAGATACAACTGCTGGATAATGGAGCAGGTGCTGATGCTTTCAGAAATGATGGCATCTATTCCAGTTACTTCACTGAACTAACAACAGGAAAATACAGCTTGAAAGTGAAAGTACATAACAATGATGGCATGGCCagattctccctcaggagacacAGTGGAGCACTTTACATACCTGGATATGTGGTTAATGGACAAGTAGTGATGAATCCCCCAAAGCCCCCAATCAGTGAGGATGACCTGCAGGCTGATGTGGGCAGCTTCACCAGGACAGTCATAGGAGAGAGCTTCTCAGTCAGTCTCCCACCTGGTGTCCCCCCTCCAAATTTCCCCCCTAACAAAATCACAGACCTGAATGCAGAGATAGAGGAGGACAAAGTGCTGCTCACCTGGACTGCACCTGGGGAAGACATGGACCAAGGCACAGCAACGGCCTATGAGATCCGTTTTAGTGAAGATTCGGACCTACTCAGATCCAACTTCAGTACCGCTCATCTTGTCACATACGACCTCTCACCAAAGAAGGCAGGCTCCCCAGAAaagctctctttcactctcttctcAATCATCAAAAATGGCACCACTCTGTTCTTTGCAGCAAAAGCAGAAGACAAATCTTTCCTGAAATCTGAAACATCcaacattattcaagtgaccaAGATTGTTCCCAAAGCTCCTGTTCCTTCTCCAACTGATGCGCCTGATACATCAGGCAGTGGTGTGAACATTACTGCTATAGTCATATCAGTCACCACAGTAACAATGGTGGCTTGTCTGATTGCTAGTGTGACAATGTGTTCAATTAAATCAAGGAGAGTTAATCATGCTTAAAACAAATTATGACGATGAACAAATGTAGCTCCAGCTCATTGCACTGAATCATAGCAAAGCTTCCTGTGTTTTTGATTAACACTAAAAAAACATATGAAGTAGAGGGAATAAATGAGCTTATCTACCATTCTTTGTTTTTTAAATAGCTGAAAGGTTAGAATGAGATCATAGCTAACCAAATTAAATTGATCGTGCTATGATAGATTGATTAGACCGATTCTCTTAAGATCTCATTTGAAGCTTTGTGTTTGTGCATTAACCATCATGTGTTTACAATGAAGAACATGTTCTGTTATTAAGGTACAATATGTAAGATTTATCATGAAATTGATTGACATTAATGTGTATTATGTCATGACTGGCCTCCTCGGGTCAGGTTACCGTGGACCACAGTCCTACAGAGAGATCTCACACCCACCAGCGGGGAAAAGATCGAGAGGCatagagatgttttttttttgttgacaccTCACGACCATTGTAAATCTAATGCAGCAGACAAAATTCCTTTGTCCTCACTATGGAGAACCGGCCTCTGAACATTAACATGCAATAAATGGACTTTGGGACAATAGGtttcgtcagccacaatggtggtaatgacgatagatggaatatgaaaattaatgttgtttttgttatgttattaaaAGGTAAAGGACGACGTTataacgaaaacattgtaactttaagagttttcctagtatatgctGGATGTTTGCATATTGTAcattgtgtggaaaatgtccagatcaaagagaatgtttttgtaaagatgaaatgtgaagttagttgtctaaattgGATCTGAGATAGTTGTATAAATTGAATCCGGTCACCACTCTCCATCGAATTGTGTGTCTACACTGCTTTCATTCCTACACTGTGAGCCCTGAGCTACAGGGCTGGCTGTTCTCAAAATACCCCTTTCAGAACAAGGGCGAGGAAACAGACCACTAAGACAAAGGACACTGACATGATGAGGACAACCAGAGAGTTACATACCCTGTAACCAGAGAAGTGCGTCATCAGAGAAGCCGAAACTGTCCACGCAGAGACCCCCATCGGAGACCTTTAAcatgtaattacatcattatattctgacctaTGAGAGCGGCAGTTCGGggcaaggttagggttaaaataaTCATAGCTGACAAATGCACCCAAGTGTATTTTTCTCTCgtgtactctctctctttctctctcttttgaaatccTAATTTTGTGTAacgtgtcatattgtgttggcCCGCTAGGGACTGGTTCATcgtactaagttctaatcaatagcctagacggtaggtttgtgtatgtgtatctaaTATCATTTTagcttgttagtaaataaataatcaactcatG

Function

NR:

description
epithelial chloride channel protein-like isoform X2

GO: NA

KEGG:

id description
K05030 CLCA3_4; calcium-activated chloride channel regulator 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604594.2 True 4133 mRNA 0.42 14 85271864 85283832
Loading

Neighbor

gene id symbol gene type direction distance location
ccn1 cyr61 coding upstream 397924 84870956 ~ 84873940 (+)
LOC118964675 NA coding upstream 631550 84605629 ~ 84640314 (+)
LOC118964730 NA coding upstream 688306 84582236 ~ 84583558 (+)
dnai3 wdr63 coding upstream 710406 84531415 ~ 84561458 (+)
LOC110524708 gpsm2 coding upstream 750788 84492231 ~ 84521076 (+)
LOC118964731 LOC106560414 coding downstream 49394 85333226 ~ 85345925 (+)
LOC118964732 LOC106560414 coding downstream 80743 85364575 ~ 85381219 (+)
LOC118964677 LOC106560414 coding downstream 113177 85397009 ~ 85410529 (+)
ttc22 ttc22 coding downstream 214371 85498203 ~ 85502332 (+)
dnai4 wdr78 coding downstream 227811 85511643 ~ 85525950 (+)
G449622 NA non-coding upstream 224131 85047533 ~ 85047733 (+)
G449621 NA non-coding upstream 224373 85047228 ~ 85047491 (+)
G449589 NA non-coding upstream 298677 84972631 ~ 84973187 (+)
G448977 NA non-coding upstream 452166 84818727 ~ 84819698 (+)
G448857 NA non-coding upstream 667951 84603652 ~ 84603913 (+)
G449775 NA non-coding downstream 45258 85329090 ~ 85329291 (+)
G449807 LOC106560455 non-coding downstream 157947 85441779 ~ 85445543 (+)
G449835 NA non-coding downstream 207129 85490961 ~ 85491202 (+)
G449838 NA non-coding downstream 210176 85494008 ~ 85495636 (+)
LOC118964674 NA other upstream 882263 84386803 ~ 84389601 (+)
G448698 NA other upstream 969391 84302100 ~ 84302473 (+)
LOC110524684 NA other upstream 1477511 83788574 ~ 83794357 (+)
G447020 NA other upstream 2813481 82452606 ~ 82458383 (+)
G447001 NA other upstream 2829641 82424198 ~ 82442223 (+)
G449774 NA other downstream 44740 85328572 ~ 85328942 (+)
G449809 NA other downstream 162132 85445964 ~ 85447575 (+)
G450333 NA other downstream 1184706 86468538 ~ 86468937 (+)
G450331 NA other downstream 1270641 86554473 ~ 86558452 (+)
G450394 NA other downstream 1312315 86596147 ~ 86596515 (+)

Expression

LOC110524716(LOC106560454) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 500.
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LOC110524716(LOC106560454) Expression in each Bioproject

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LOC110524716(LOC106560454) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15000.
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Co-expression Network