Gene
RNA
| Item | Value |
|---|---|
| gene id | raver2 |
| gene name | raver2 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 86351342 ~ 86547212 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| raver2 | Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in viral nucleocapsid. Predicted to be active in nucleus. Orthologous to human RAVER2 (ribonucleoprotein, PTB binding 2). |
| description |
|---|
| ribonucleoprotein PTB-binding 2 |
| id | description |
|---|---|
| K25000 | RAVER2; ribonucleoprotein PTB-binding 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036978623.1 | False | 3874 | mRNA | 0.53 | 15 | 86351342 | 86547212 |
| XM_036978624.1 | True | 3871 | mRNA | 0.53 | 15 | 86351342 | 86547212 |
86,260,000
86,280,000
86,300,000
86,320,000
86,340,000
86,360,000
86,380,000
86,400,000
86,420,000
86,440,000
86,460,000
86,480,000
86,500,000
86,520,000
86,540,000
86,560,000
86,580,000
86,600,000
86,620,000
86,640,000
86,660,000
NC_048569.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ak4 | ak4 | coding | downstream | 91154 | 86253504 ~ 86260188 (-) |
| LOC110524725 | dnajc6 | coding | downstream | 103252 | 86187387 ~ 86248090 (-) |
| LOC110524724 | lepr | coding | downstream | 176891 | 86087193 ~ 86174451 (-) |
| LOC118964679 | NA | coding | downstream | 279464 | 86071203 ~ 86071878 (-) |
| pde4ba | pde4b | coding | downstream | 320193 | 85682309 ~ 86031149 (-) |
| cachd1 | cachd1 | coding | upstream | 9518 | 86556176 ~ 86712442 (-) |
| ror1 | LOC106560470 | coding | upstream | 216160 | 86763372 ~ 87043134 (-) |
| pgm1 | LOC106560477 | coding | upstream | 507822 | 87055034 ~ 87067699 (-) |
| efcab7 | efcab7 | coding | upstream | 524619 | 87071831 ~ 87093894 (-) |
| alg6 | alg6 | coding | upstream | 560788 | 87108000 ~ 87144341 (-) |
| G451186 | NA | non-coding | downstream | 16467 | 86300595 ~ 86334875 (-) |
| G451053 | NA | non-coding | downstream | 48381 | 86251118 ~ 86302961 (-) |
| G451089 | NA | non-coding | downstream | 214995 | 86136136 ~ 86136347 (-) |
| G451013 | NA | non-coding | downstream | 341909 | 86009111 ~ 86009433 (-) |
| G451012 | NA | non-coding | downstream | 342272 | 86008751 ~ 86009070 (-) |
| G451273 | NA | non-coding | upstream | 5631 | 86552843 ~ 86553228 (-) |
| G451240 | NA | non-coding | upstream | 7253 | 86554465 ~ 86554798 (-) |
| G451241 | NA | non-coding | upstream | 7701 | 86554913 ~ 86556046 (-) |
| G451281 | NA | non-coding | upstream | 32675 | 86579887 ~ 86580526 (-) |
| G450957 | NA | other | downstream | 472368 | 85877733 ~ 85878974 (-) |
| G450752 | NA | other | downstream | 864184 | 85486842 ~ 85487158 (-) |
| lurap1 | LOC106560455 | other | downstream | 879462 | 85443496 ~ 85472422 (-) |
| G450676 | NA | other | downstream | 1008270 | 85342788 ~ 85343072 (-) |
| G448452 | NA | other | downstream | 2434701 | 83916136 ~ 83916641 (-) |
| G451271 | NA | other | upstream | 1626 | 86548838 ~ 86549878 (-) |
| G451286 | NA | other | upstream | 50140 | 86597352 ~ 86597744 (-) |
| G451856 | NA | other | upstream | 694642 | 87241854 ~ 87243233 (-) |
| G452255 | NA | other | upstream | 951154 | 87498366 ~ 87499136 (-) |
