Gene
RNA
| Item | Value |
|---|---|
| gene id | cachd1 |
| gene name | cachd1 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 86556176 ~ 86712442 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| cachd1 | Predicted to enable voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Orthologous to human CACHD1 (cache domain containing 1). |
| description |
|---|
| PREDICTED: VWFA and cache domain-containing protein 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036978626.1 | False | 5710 | mRNA | 0.52 | 26 | 86556730 | 86712441 |
| XM_036978627.1 | False | 4151 | mRNA | 0.55 | 26 | 86558266 | 86712442 |
| TU510707 | True | 730 | lncRNA | 0.35 | 1 | 86556176 | 86556905 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| raver2 | raver2 | coding | downstream | 9518 | 86351342 ~ 86547212 (-) |
| ak4 | ak4 | coding | downstream | 296542 | 86253504 ~ 86260188 (-) |
| LOC110524725 | dnajc6 | coding | downstream | 308640 | 86187387 ~ 86248090 (-) |
| LOC110524724 | lepr | coding | downstream | 382279 | 86087193 ~ 86174451 (-) |
| LOC118964679 | NA | coding | downstream | 484852 | 86071203 ~ 86071878 (-) |
| ror1 | LOC106560470 | coding | upstream | 50930 | 86763372 ~ 87043134 (-) |
| pgm1 | LOC106560477 | coding | upstream | 342592 | 87055034 ~ 87067699 (-) |
| efcab7 | efcab7 | coding | upstream | 359389 | 87071831 ~ 87093894 (-) |
| alg6 | alg6 | coding | upstream | 395558 | 87108000 ~ 87144341 (-) |
| foxd3 | foxd3 | coding | upstream | 439383 | 87151825 ~ 87153819 (-) |
| G451241 | NA | non-coding | downstream | 684 | 86554913 ~ 86556046 (-) |
| G451240 | NA | non-coding | downstream | 1932 | 86554465 ~ 86554798 (-) |
| G451273 | NA | non-coding | downstream | 3502 | 86552843 ~ 86553228 (-) |
| G451266 | NA | non-coding | downstream | 18146 | 86538142 ~ 86538584 (-) |
| G451261 | NA | non-coding | downstream | 23509 | 86532848 ~ 86533221 (-) |
| G451320 | NA | non-coding | upstream | 248 | 86712690 ~ 86712938 (-) |
| G451324 | LOC106586115 | non-coding | upstream | 5521 | 86717963 ~ 86718212 (-) |
| G451330 | NA | non-coding | upstream | 9829 | 86722271 ~ 86722521 (-) |
| G451345 | NA | non-coding | upstream | 24408 | 86736850 ~ 86738039 (-) |
| G451353 | NA | non-coding | upstream | 36350 | 86748792 ~ 86749083 (-) |
| G451271 | NA | other | downstream | 6852 | 86548838 ~ 86549878 (-) |
| G450957 | NA | other | downstream | 677756 | 85877733 ~ 85878974 (-) |
| G450752 | NA | other | downstream | 1069572 | 85486842 ~ 85487158 (-) |
| lurap1 | LOC106560455 | other | downstream | 1084850 | 85443496 ~ 85472422 (-) |
| G450676 | NA | other | downstream | 1213658 | 85342788 ~ 85343072 (-) |
| G451856 | NA | other | upstream | 529412 | 87241854 ~ 87243233 (-) |
| G452255 | NA | other | upstream | 785924 | 87498366 ~ 87499136 (-) |
| LOC110523029 | LOC106584023 | other | upstream | 1061780 | 87685213 ~ 88049103 (-) |
| G452442 | NA | other | upstream | 1147685 | 87860127 ~ 87866464 (-) |
| G451281 | NA | non-coding | upstream | 22982 | 86579887 ~ 86580526 (-) |
| G451284 | NA | non-coding | upstream | 30521 | 86587426 ~ 86587961 (-) |
| G451291 | NA | non-coding | upstream | 56019 | 86612924 ~ 86613373 (-) |
| G451297 | NA | non-coding | upstream | 87295 | 86644200 ~ 86647345 (-) |
| G451299 | NA | non-coding | upstream | 99980 | 86656885 ~ 86657089 (-) |
| G451286 | NA | other | upstream | 40447 | 86597352 ~ 86597744 (-) |
