pgm1 (LOC106560477)


Basic Information

Item Value
gene id pgm1
gene name LOC106560477
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87055034 ~ 87067699 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978629.1
AATCTAAAGGTGGGAAGGACCTAACCAAGGGGGATCTTCGAGTGTGTACGTGTGGCAGCTATGCGGTGCATTCGCCTCAACCGAATACGCGGATCACACGGGCTGTCAACCTTTTGTGGAAAATGACGAAAATCACAGTAGTCAAAACCAAGGCTTATCCCGACCAGAAGCCTGGCACGAGTGGACTGAGGAAAAGAGTGACAGTCTTTCAAACGAATGAGCACTATGCAGAGAACTTCATTCAAAGCATTATCTCTTGCATCGAACCAGCGGAGCGTCAGCCTGGACTGCTCGTAGTGGGAGGCGATGGAAGGTTTTTCATGAAAGATGCCATTAAGTTGATCATCCAGATCGCCGCTGCTAATGGGATAGGCCACCTGGTCATTGGTCAGAATGGCATCATGTCCACCCCCGCTGTGTCCTGTGTGATCCGCAAGCTCAAAGCCGTGGGAGGAATCATCCTCACGGCCAGCCACAACCCCGGTGGCCCTAAAGGAGACTTTGGCATCAAGTACAACATCGCCTCCGGAGGTCCTGCGCCCGAGGGAATCACAGACAAAATATTCCAGATCAGCAAGAGCCTAACAGAGTACCACATCTGCCCCGACCTCAAGGTTGACATCTCCAAGATCGGCAAGCAGACGTTTGAGGTGGACACATTCAAGCCCATGACAGTGGAGATCGTGGACTCTGTGGAGTCCTACGCTGAGATGCTGAGGGGAATCTTCGACTTCAATGCCCTAAAACAGCTTGTGTCTGGAGCCAATCACATTAAAGTCCGTCTGGATGCCATGCACGGAGTGGTTGGACCCTACGTGAAGAAGATTGTCTGTGAGGAGTTGGGCGCTGCCGCTGACGGTGCCTTCAACTGTGTCCCCAAGGAGGACTTTGGTGGTCATCACCCTGACCCCAATCTGACCTACGCCTCTGACCTGGTCAACGCCATGAAGGGAGGAGATTACGACCTCGGAGCGGCCTTTGATGGTGACGGTGATCGTAACATGGTCCTTGGAAAGCATGGCTTCTTTGTCAACCCTTCTGACTCTGTGGCCATCATTGCAGCCAACATCACTTGCATCCCCTACTTCCAGAAGACTGGGGTCAAAGGTCTGGCCCGCAGCATGCCCACCAGTGGAGCTCTGGACAATGTGGCTAAAGCCTTGAAGATGAATCTGTATGAGACTCCTACTGGCTGGAAGTTCTTTGGCAACCTGATGGACGCTGGCAAGCTGTCTCTGTGCGGAGAGGAGAGCTTCGGCACTGGCTCTGATCACATCCGTGAGAAGGACGGCTTGTGGGCGGTGCTGGCCTGGATGTCCATCCTAGCCCACAGGAAGCAGAGTGTGGAAGAGATCATGAAAGACCACTGGAACAAATTTGGCAGGAACTTCTTCACCAGGTATGATTATGAAGAAGTGGACTCAGACAAAGCCAACACCATGATCAAGGAGCTTGAGGCTAAGATGTTTGACAAGTCCTTTGTGGGCCAGAAGTTTTCATCGGGAGACAAGAGCTATGAGGTGGCTGTCTCTGACAATTTTGCCTACACCGACCCTGTGGACGGCAGCGTCTCCAAGAACCAGGGTCTGAGGATTGTCTTCTCCGACGGCTCCAGGATCATCTTTCGTCTCAGTGGGACAGGCAGCGCTGGTGCGACCGTCAGGCTCTACATAGACAGCTATGAGAAGGACCCCGCCAAAATCTACGGCGACGCACAGGTCATGCTGAAACCTCTGGTGGAGATTGCGCTGAAGATCTCTGGGCTCCATGAGAAGACCGGCCGCACCGGGCCCACTGTGATCACATAGACTGCTGGCCATGCCCCCCACTGTGATCACGTAGACTGCTGGCCATGCCCCCCACTGTGATCACGTAGACTGCTGGCCCTGCCCCCCACTGTGATCACGTAGACTGCTGGCCATGCCCCCCACTGTGATCACGTAGACTGCTGGCCCTGCCCCCCACTGTGATCACGTAGACTGCTGGCCCTGATCAGGCCCTGTCACACCCTTCCAGGTAACTCTGTCCTATCAACTGTTCCACTTGTGCCTCTGAAGAACAACCTCACCTCACTTGTACCATAAAGCCATCCAAACAAAAGCTTAAAATGTAACACTGCCATTCACCATGAATAAAACTTCCTTACAAAATAA

Function

NR:

description
phosphoglucomutase-1

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016868 intramolecular transferase activity, phosphotransferases molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01835 pgm; phosphoglucomutase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978629.1 True 2153 mRNA 0.53 11 87055034 87067699
Loading

Neighbor

gene id symbol gene type direction distance location
ror1 LOC106560470 coding downstream 11900 86763372 ~ 87043134 (-)
cachd1 cachd1 coding downstream 342592 86556176 ~ 86712442 (-)
raver2 raver2 coding downstream 507822 86351342 ~ 86547212 (-)
ak4 ak4 coding downstream 794846 86253504 ~ 86260188 (-)
LOC110524725 dnajc6 coding downstream 806944 86187387 ~ 86248090 (-)
efcab7 efcab7 coding upstream 4132 87071831 ~ 87093894 (-)
alg6 alg6 coding upstream 40301 87108000 ~ 87144341 (-)
foxd3 foxd3 coding upstream 84126 87151825 ~ 87153819 (-)
atg4c atg4c coding upstream 323962 87391661 ~ 87401413 (-)
angptl3 LOC106584028 coding upstream 351531 87419230 ~ 87424068 (-)
G451677 NA non-coding downstream 52637 86999152 ~ 87002397 (-)
G451662 NA non-coding downstream 78488 86975159 ~ 86976546 (-)
G451656 NA non-coding downstream 88513 86962194 ~ 86966521 (-)
G451657 NA non-coding downstream 88954 86962461 ~ 86966080 (-)
G451618 NA non-coding downstream 169589 86884076 ~ 86885445 (-)
G451740 NA non-coding upstream 63318 87131017 ~ 87133651 (-)
G451742 NA non-coding upstream 70748 87138447 ~ 87140841 (-)
G451743 NA non-coding upstream 70896 87138595 ~ 87142676 (-)
G451860 NA non-coding upstream 180906 87248605 ~ 87248829 (-)
G451286 NA other downstream 457290 86597352 ~ 86597744 (-)
G451271 NA other downstream 505156 86548838 ~ 86549878 (-)
G450957 NA other downstream 1176060 85877733 ~ 85878974 (-)
G450752 NA other downstream 1567876 85486842 ~ 85487158 (-)
G451856 NA other upstream 174155 87241854 ~ 87243233 (-)
G452255 NA other upstream 430667 87498366 ~ 87499136 (-)
LOC110523029 LOC106584023 other upstream 706523 87685213 ~ 88049103 (-)
G452442 NA other upstream 792428 87860127 ~ 87866464 (-)
G452457 NA other upstream 827033 87894732 ~ 87895212 (-)

Expression

pgm1(LOC106560477) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
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pgm1(LOC106560477) Expression in each Bioproject

Bar chart with 21 bars.
pgm1(LOC106560477) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
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Co-expression Network