efcab7 (efcab7)


Basic Information

Item Value
gene id efcab7
gene name efcab7
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87071831 ~ 87093894 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604620.2
ataagtgaaaataTATGGGAACCTTTCACATTTCTTGTTCCTTCCGATGTCCTTTTCTCAGTGCGTCGCGAAATGTTTGTGTACATAGCAACTAAACTACCGTTATTTCTGGTCCAAACTGTTGGAAGCAGTCTTTTTTTCAACGAGAATGTCTCTACAGGCATCTTCTCAGTCTATCGGGATGCAGAAATGTACTGATGAGGAAACGTTCTACATGCACTGCAGAGCTGCCTACCTGACTGTATTTAGGTCTAGTCTGGCCAGTATCAGCTCCAAACATCAGCTATGCCGTGTTCTCCAGCAGGCAGGCAGAAATCCATCCCAGGCAACTCTCAACAAACACTGGACCCCAAGTACCACTAAGCTGAACTTTGATGATTTCTGTGAGATAGTGAAGAATGAGAGGCCGACAGAGGTGCACGAGTTGATGAGAGCCTTCAGAAAGATGGACATTAATGGAGATGGCTACATCTCACACAATGAACTACACATAGTCCTCACTTCAAGAGGTGAAAAGATGGCTGCCAAGGAGGTGGATGCCATTTTTTCATTAGCTGATACCAACAAAGATGGCAAATTGGACTATGCCGAGTTCTGCAGACTGTTGGAGTCCACGGCAGAGCAGTGTCAGATTGCAGCTCTGGAGAGACTGGAGGCTGATGCCAAGCTGAAGAGGCAGAACTTTGGCAACGAGTTAGACAGCCCTCCAAAGAGCTTAGCGTCCACCGCTGTGACTGTCCCCCAGCCACCTCACAAAACCGAGCCGGACATCACACTGAAGAAAGACAGCAGATCGTCGTCCCGGCCCTCCTCAGCTCGCAGTAGACGGTCGTCACTGTCTAACGCCATCACCATGGCAGCCAGCAACACTAAGAGCGTCAAGCTGGCAGAGCCCACATCTATACAGGACTGGCATCACACCTGTATGAAGGGCAGTTTCTTCCTTGAGGAGGATGGAGGCATCACGTCCCTGCAATACCGTCTCACCGTCCCCCAGACAGCCACCGTCTACCTCACCATCAGACCTCTCAACCTTAGCCAGAGACTTGAAAAGCCCTCATCCTGGATGTCGGTGGACACAGCTGTCtttgtggtgtcaggaaaagaCACTAAAGAGGACTCCACTTTGGTGTGTTTCACTGAGTCAAGAGACAAAGAGAAGTGTTGCTGGAAGGGGGAGCTGAGTGCTGGTACCTACTGCCTCCTTCCCTTCACCACGAGCTGTAGGCTGAGGAAGAGGACCAGGAAGAGTGTGTCTAAACCTGTCACGCTGGTCAACAGGACTGACACGGGGGAGCTGGACCTCACTAGGGACTTCAGGGGGGCGCTGTCTGATATCTTTGAGGTGATAGACCTGGATGGGAACGGCCTCCTCAGTCTGGAGGAGTACAACTTCTTTGAGCTCAGGACCAGTGGAGAGAACTGTGATGAGGAAGCATGGGCTGTCTGCAAAGAGAACTTTGACACCCGGAAGAACCAGCTCAGTCGTCAGGGCTTCATGGAGCTCAACCTGATGGAGGCCAGCGAGAGGGGGGGAGACCCCACAGACCTCTGGGTAACGCTGGAGGCCATGGGCTACAACCGCAATCTGGAGATGGTGGAGGCATGTCCGTTCCTGATAGATGTTTACTGTGAGGAGGGTCAGTGTACTCTGCAGCCGGTCAGTCTGGAGTCAGGCCACAGGATCCTGAACACAGCCCTGCAGAGGTCCATCACggccaggtcagaggtcaaaacCCTCAGGGGTCAGGAGAACGTCCTGGTCTACACCTACAGAGGAGAACACAGGATCTCCACCGTCATCGCCAACAAGACCAACCAGAAGGTGACGGTGCACGTGAACAACGAGCAGAGTAAGaactgcagcagcagcagagggatGAGTGTGTTCGCTGTGGAGGTCCCTGCTAGAACCAAGATGGTGTGCCAGCATGTCCTGCCCATCAACGAGCACCAGGAGTGGACTTACAACTGTGTGGAGAGCATTATACCATGCCAGTGAAACAGTGATAAGACAGCAACTCTAATATTACCATGGTACTTTATAAAACATACTAATAGAAAAGGGACAGTGGGCCAAAAGCTATTTATAGCCAACGGGAAACTGAATTAATGAATAATACTATATGTATGTAACATGTGCCTTTGTGATAGTGGTGTGTAGTTGTGTTTTTCCATGGAATTGAATGAAATTATGTTGATTTTGAAAAATCTTTAATGGAAATGGAACTATAATAGAGATACTGTAGATAATGATACTGAACTAATATTTGCACTGATTTATATTATTTTTAACACTCAATTTTCATTGTACTGTGACTCCTATAATAATGTGTATAATTTTGCAATAGTACATAGTTTTATCACATGCCTTTATATACAaatatgatgtgcattgtaacGTGTTTTAACAAGTGTGCTCAAGTCTCATATTTACAAACAATATGCTATATAACAATATTACATTATTACGTATGTCTGTCAAAACTCAAAataaatctcaaatttaaaataa
>TU511208
TCACACATAGTGGGCAGAATAGTTTATGTGTGGAGCATTAAGATCATCAGAGTGCTGCAGTTTCTTTATGATTTAGTAGACTGTTTTTCTCCATGTATCTGGTAATACTATACTGTAGGAGACCAACCAGAAGGTGACGGTGCACGTGAACAACGAGCAGAGTAAGaactgcagcagcagcagagggatGAGTGTGTTCGCTGTGGAGGTCCCTGCTAGAACCAAGATGGTGTGCCAGCATGTCCTGCCCATCAACGAGCACCAGGAGTGGACTTACAACTGTGTGGAGAGCATTATACCATGCCAGTGAAACAGTGATAAGACAGCAACTCTAATATTACCATGGTACTTTATAAAACATACTAATAGAAAAGGGACAGTGGGCCAAAAGCTATTTATAGCCAACGGGAAACTGAATTAATGAATAATACTATATGTATGTAACATGTGCCTTTGTGATAGTGGTGTGTAGTTGTGTTTTTCCATGGAATTGAATGAAATTATGTTGATTTTGAAAAATCTTTAATGGAAATGGAACTATAATAGAGATACTGTAGATAATGATACTGAACTAATATTTGCACTGATTTATATTATTTTTAACACTCAATTTTCATTGTACTGTGACTCCTATAATAATGTGTATAATTTTGCAATAGTACATAGTTTTATCACATGCCTTTATATACAaatatgatgtgcattgtaacGTGTTTTAACAAGTGTGCTCAAGTCTCATATTTACAAACAATATGCTATATAACAATAT

Function

symbol description
efcab7 Predicted to enable calcium ion binding activity. Orthologous to human EFCAB7 (EF-hand calcium binding domain 7).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604620.2 False 2515 mRNA 0.47 14 87071831 87093894
TU511208 True 769 lncRNA 0.36 3 87071885 87074708

Neighbor

gene id symbol gene type direction distance location
pgm1 LOC106560477 coding downstream 4132 87055034 ~ 87067699 (-)
ror1 LOC106560470 coding downstream 28697 86763372 ~ 87043134 (-)
cachd1 cachd1 coding downstream 359389 86556176 ~ 86712442 (-)
raver2 raver2 coding downstream 524619 86351342 ~ 86547212 (-)
ak4 ak4 coding downstream 811643 86253504 ~ 86260188 (-)
alg6 alg6 coding upstream 14106 87108000 ~ 87144341 (-)
foxd3 foxd3 coding upstream 57931 87151825 ~ 87153819 (-)
atg4c atg4c coding upstream 297767 87391661 ~ 87401413 (-)
angptl3 LOC106584028 coding upstream 325336 87419230 ~ 87424068 (-)
usp1 usp1 coding upstream 411855 87505749 ~ 87520050 (-)
G451677 NA non-coding downstream 69434 86999152 ~ 87002397 (-)
G451662 NA non-coding downstream 95285 86975159 ~ 86976546 (-)
G451656 NA non-coding downstream 105310 86962194 ~ 86966521 (-)
G451657 NA non-coding downstream 105751 86962461 ~ 86966080 (-)
G451618 NA non-coding downstream 186386 86884076 ~ 86885445 (-)
G451740 NA non-coding upstream 37123 87131017 ~ 87133651 (-)
G451742 NA non-coding upstream 44553 87138447 ~ 87140841 (-)
G451743 NA non-coding upstream 44701 87138595 ~ 87142676 (-)
G451860 NA non-coding upstream 154711 87248605 ~ 87248829 (-)
G451863 NA non-coding upstream 174053 87267947 ~ 87268208 (-)
G451286 NA other downstream 474087 86597352 ~ 86597744 (-)
G451271 NA other downstream 521953 86548838 ~ 86549878 (-)
G450957 NA other downstream 1192857 85877733 ~ 85878974 (-)
G450752 NA other downstream 1584673 85486842 ~ 85487158 (-)
G451856 NA other upstream 147960 87241854 ~ 87243233 (-)
G452255 NA other upstream 404472 87498366 ~ 87499136 (-)
LOC110523029 LOC106584023 other upstream 680328 87685213 ~ 88049103 (-)
G452442 NA other upstream 766233 87860127 ~ 87866464 (-)
G452457 NA other upstream 800838 87894732 ~ 87895212 (-)

Expression

efcab7(efcab7) Expression in all Baseline Samples

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efcab7(efcab7) Expression in each Bioproject

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efcab7(efcab7) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network