alg6 (alg6)


Basic Information

Item Value
gene id alg6
gene name alg6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87108000 ~ 87144341 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604621.2
CGACACGTCACTCAACTGGCGCCTGCGCTGACGTGTTCAGGAAGTGTTAACAACAATCCTGCACGGAAGCTGCAACATGCATCGAGAATTATAGCATTTCGTTGCCAATAATAACGCTGTTGTATAGTATCGGTCATGGAGAACTGGAGCCTTGTGTCCATTTGTGTTTTGTTCGGTCTTACGGCGAGATGGGCTGTATCCTTGAACTCGTATTCAGGGGCAGGCAAACCACCCATGTTCGGGGACTATGAAGCTCAAAGGCACTGGCAAGAAGTGACATACAATCTGCCTGTTCATGAATGGTACTTCAACACTACAGACAACAACCTAAACTACTGGGGTTTGGACTATCCCCCTCTCACAGCCTACCACAGCCTGCTCTGTGCACATGTGGCCAAGCTGATAAACCCAGACTGGGTGGAGTTGCATGCGTCTCGAGGTCATGAAAGCTATGGACATAAGTTGTTTATGAGAGCCACGGTTCTTGTTGCAGATCTGCTGATATACATTCCTGCTGTTGTTCTTTACAGTTTTTACCTCAGTGAAGGATCAAACAAAAAGAAGGTCTGCACAGTCCTCTGTATCCTGCTCTATCCAGGCCTTATTCTAATCGACTACGGGCATTTCCAATATAACAGTATAAGCCTGGGGCTGGCCCTATGGGGTGTGGTGGTTCTGGGTCTGGGCTGGGACGTGCTGGGCTCTCTGGCCTTCGTCCTGTCCCTCAACTACAAACAGATGGAGCTCTACCACTCCCTACCCTTCTTCTGCTATTTACTGGGCAAGTGTTTCAAGCAGGGCCTAGCAGGCCGAGGgctGTTCCTGCTAGTCAAGATCGCTGTAACAGTCCTGGTGACCTTTGCCCTCTGCTGGCTACCCTTCCTGTCTGACCCTGGCCAGATCCTGCAGGTGGTGCACCGCCTTTTCCCTGTAGGGCGAGGCCTATTCGAGgaTAAAGTGGCCAACACGTGGTGCAGCTTGAATGTCCTGATAAAGATCAAGACCATCCTGTCCACTGATACCCAGCTCTACATCAGtttgACCACCACTCTCCTGGCTATCCTACCTTCGTCTATAAAGCTTTTGATGAAACCTACATTGTGGCAGTTCAAACTTGCCTTGGTCAACTCCTCTCTGGcattcttcctcttctcctttcaAGTCCATGAGAAATCAATCCTCCTGCCTGCCTTCATGCTGCCGTTGTTTCTGAAGGATGGCCTGTTGGTGCCGTAcgtggtcacctccctggccttCCTGTTCTTCTCCATCTACCTGCTCTCAGCCCTTGAGCACTGCTCAGAGGACAAGCTGCGTCTGGGGCCCTACCGCCGCCTCCTCATCTGCATGCCCCGCATGGACCTCGGCAGAGTCACCAAGTGGAAATTCTATTTCTCCATCACGGCTATGGCTGGTTTGAGCTTTATGAGCGTGGCTTTGGCCCCTCCGGCCCAGCTGCCTGATTTGTTTCCCCTCCTGGTGTCTGTGTTCTCCTACCTACACTTCCTGGGCCTCCTCCTCTACTTCAACATTGTCCAGATAGCCGAGCCACCACAATCTGTGAGGAAGAACCAGAAGAAAAGTAACTGAGTAATGATTAGGGAGGTAGAGACCAGATGATAACTGAGTAATTATAAGGGTGGAAAAAACAGAACTGGGTGGTCACCACCCAACAGAAAAACTAACTAAGCACAGTGCTTCAGTCAATTAGCAATAAGGCCCATGGACCAACTACCAGTCTAGGGCCAATCATTTAGAATCTTTATTCTCTAGAGAACCCTCCTGTCAACATGAATGGTTGCTGTTTTGTCAATGCCTAATTATGTACATCAAGCatgattattttttactttactgTTTTTCAATATTTTCAAATGTATGTAACaacattacatttattttgtacCAATAGACTATTTGTCTTAAAATAAAATCACCTGATATGAA
>XM_036978630.1
CGACACGTCACTCAACTGGCGCCTGCGCTGACGTGTTCAGGAAGTGTTAACAACAATCCTGCACGGAAGCTGCAACATGCATCGAGAATTATAGCATTTCGTTGCCAATAATAACGCTGTTGTATAGTATCGGTCATGGAGAACTGGAGCCTTGTGTCCATTTGTGTTTTGTTCGGTCTTACGGCGAGATGGGCTGTATCCTTGAACTCGTATTCAGGGGCAGGCAAACCACCCATGTTCGGGGACTATGAAGCTCAAAGGCACTGGCAAGAAGTGACATACAATCTGCCTGTTCATGAATGGTACTTCAACACTACAGACAACAACCTAAACTACTGGGGTTTGGACTATCCCCCTCTCACAGCCTACCACAGCCTGCTCTGTGCACATGTGGCCAAGCTGATAAACCCAGACTGGGTGGAGTTGCATGCGTCTCGAGGTCATGAAAGCTATGGACATAAGTTGTTTATGAGAGCCACGGTTCTTGTTGCAGATCTGCTGATATACATTCCTGCTGTTGTTCTTTACAGTTTTTACCTCAGTGAAGGATCAAACAAAAAGAAGGTCTGCACAGTCCTCTGTATCCTGCTCTATCCAGGCCTTATTCTAATCGACTACGGGCATTTCCAATATAACAGTATAAGCCTGGGGCTGGCCCTATGGGGTGTGGTGGTTCTGGGTCTGGGCTGGGACGTGCTGGGCTCTCTGGCCTTCGTCCTGTCCCTCAACTACAAACAGATGGAGCTCTACCACTCCCTACCCTTCTTCTGCTATTTACTGGGCAAGTGTTTCAAGCAGGGCCTAGCAGGCCGAGGgctGTTCCTGCTAGTCAAGATCGCTGTAACAGTCCTGGTGACCTTTGCCCTCTGCTGGCTACCCTTCCTGTCTGACCCTGGCCAGATCCTGCAGGTGGTGCACCGCCTTTTCCCTGTAGGGCGAGGCCTATTCGAGgaTAAAGTGGCCAACACGTGGTGCAGCTTGAATGTCCTGATAAAGATCAAGACCATCCTGTCCACTGATACCCAGCTCTACATCAGtttgACCACCACTCTCCTGGCTATCCTACCTTCGTCTATAAAGCTTTTGATGAAACCTACATTGTGGCAGTTCAAACTTGCCTTGGTCAACTCCTCTCTGGcattcttcctcttctcctttcaAGTCCATGAGAAATCAATCCTCCTGCCTGCCTTGCCAGTCTGCCTGCTACTGAATGACCTTCCTCTGCCAGCCATCTGGTTTCTACAGGCTTCCACCTTCAGCATGCTGCCGTTGTTTCTGAAGGATGGCCTGTTGGTGCCGTAcgtggtcacctccctggccttCCTGTTCTTCTCCATCTACCTGCTCTCAGCCCTTGAGCACTGCTCAGAGGACAAGCTGCGTCTGGGGCCCTACCGCCGCCTCCTCATCTGCATGCCCCGCATGGACCTCGGCAGAGTCACCAAGTGGAAATTCTATTTCTCCATCACGGCTATGGCTGGTTTGAGCTTTATGAGCGTGGCTTTGGCCCCTCCGGCCCAGCTGCCTGATTTGTTTCCCCTCCTGGTGTCTGTGTTCTCCTACCTACACTTCCTGGGCCTCCTCCTCTACTTCAACATTGTCCAGATAGCCGAGCCACCACAATCTGTGAGGAAGAACCAGAAGAAAAGTAACTGAGTAATGATTAGGGAGGTAGAGACCAGATGATAACTGAGTAATTATAAGGGTGGAAAAAACAGAACTGGGTGGTCACCACCCAACAGAAAAACTAACTAAGCACAGTGCTTCAGTCAATTAGCAATAAGGCCCATGGACCAACTACCAGTCTAGGGCCAATCATTTAGAATCTTTATTCTCTAGAGAACCCTCCTGTCAACATGAATGGTTGCTGTTTTGTCAATGCCTAATTATGTACATCAAGCatgattattttttactttactgTTTTTCAATATTTTCAAATGTATGTAACaacattacatttattttgtacCAATAGACTATTTGTCTTAAAATAAAATCACCTGATATGAA

Function

symbol description
alg6 Predicted to enable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity. Predicted to be involved in oligosaccharide-lipid intermediate biosynthetic process and protein N-linked glycosylation. Predicted to act upstream of or within dolichol-linked oligosaccharide biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ic. Orthologous to human ALG6 (ALG6 alpha-1,3-glucosyltransferase).

NR:

description
dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K03848 ALG6; alpha-1,3-glucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604621.2 False 1947 mRNA 0.48 13 87108000 87144341
XM_036978630.1 True 2016 mRNA 0.48 14 87108000 87144341
Loading

Neighbor

gene id symbol gene type direction distance location
efcab7 efcab7 coding downstream 14106 87071831 ~ 87093894 (-)
pgm1 LOC106560477 coding downstream 40301 87055034 ~ 87067699 (-)
ror1 LOC106560470 coding downstream 64866 86763372 ~ 87043134 (-)
cachd1 cachd1 coding downstream 395558 86556176 ~ 86712442 (-)
raver2 raver2 coding downstream 560788 86351342 ~ 86547212 (-)
foxd3 foxd3 coding upstream 7484 87151825 ~ 87153819 (-)
atg4c atg4c coding upstream 247320 87391661 ~ 87401413 (-)
angptl3 LOC106584028 coding upstream 274889 87419230 ~ 87424068 (-)
usp1 usp1 coding upstream 361408 87505749 ~ 87520050 (-)
LOC110522895 NA coding upstream 513588 87657929 ~ 87659520 (-)
G451706 NA non-coding downstream 12987 87040819 ~ 87095013 (-)
G451677 NA non-coding downstream 105603 86999152 ~ 87002397 (-)
G451662 NA non-coding downstream 131454 86975159 ~ 86976546 (-)
G451656 NA non-coding downstream 141479 86962194 ~ 86966521 (-)
G451860 NA non-coding upstream 104264 87248605 ~ 87248829 (-)
G451863 NA non-coding upstream 123606 87267947 ~ 87268208 (-)
G451890 NA non-coding upstream 152515 87296856 ~ 87299127 (-)
G451935 NA non-coding upstream 238545 87382886 ~ 87383098 (-)
G451936 NA non-coding upstream 238913 87383254 ~ 87383483 (-)
G451286 NA other downstream 510256 86597352 ~ 86597744 (-)
G451271 NA other downstream 558122 86548838 ~ 86549878 (-)
G450957 NA other downstream 1229026 85877733 ~ 85878974 (-)
G450752 NA other downstream 1620842 85486842 ~ 85487158 (-)
G451856 NA other upstream 97513 87241854 ~ 87243233 (-)
G452255 NA other upstream 354025 87498366 ~ 87499136 (-)
LOC110523029 LOC106584023 other upstream 629881 87685213 ~ 88049103 (-)
G452442 NA other upstream 715786 87860127 ~ 87866464 (-)
G452457 NA other upstream 750391 87894732 ~ 87895212 (-)

Expression

alg6(alg6) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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alg6(alg6) Expression in each Bioproject

Bar chart with 21 bars.
alg6(alg6) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network