Gene
RNA
| Item | Value |
|---|---|
| gene id | foxd3 |
| gene name | foxd3 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 87151825 ~ 87153819 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| foxd3 | Enables DNA-binding transcription factor activity and sequence-specific DNA binding activity. Acts upstream of or within several processes, including iridophore differentiation; negative regulation of macromolecule metabolic process; and nervous system development. Predicted to be located in nucleus. Is expressed in several structures, including mesoderm; nervous system; neural crest; neural keel; and neural plate. Human ortholog(s) of this gene implicated in vitiligo. Orthologous to human FOXD3 (forkhead box D3). |
| description |
|---|
| forkhead box protein D3 |
| id | name | namespace |
|---|---|---|
| GO:0060351 | cartilage development involved in endochondral bone morphogenesis | biological_process |
| GO:0048484 | enteric nervous system development | biological_process |
| GO:0048485 | sympathetic nervous system development | biological_process |
| GO:0001755 | neural crest cell migration | biological_process |
| GO:0050935 | iridophore differentiation | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0001822 | kidney development | biological_process |
| GO:0048846 | axon extension involved in axon guidance | biological_process |
| GO:0007389 | pattern specification process | biological_process |
| GO:0048937 | lateral line nerve glial cell development | biological_process |
| GO:0030318 | melanocyte differentiation | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0001658 | branching involved in ureteric bud morphogenesis | biological_process |
| GO:0007422 | peripheral nervous system development | biological_process |
| GO:0051090 | regulation of DNA-binding transcription factor activity | biological_process |
| GO:0009790 | embryo development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0008134 | transcription factor binding | molecular_function |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| GO:0008301 | DNA binding, bending | molecular_function |
| id | description |
|---|---|
| K09397 | FOXD; forkhead box protein D |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021604627.2 | True | 1995 | mRNA | 0.48 | 1 | 87151825 | 87153819 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| alg6 | alg6 | coding | downstream | 7484 | 87108000 ~ 87144341 (-) |
| efcab7 | efcab7 | coding | downstream | 57931 | 87071831 ~ 87093894 (-) |
| pgm1 | LOC106560477 | coding | downstream | 84126 | 87055034 ~ 87067699 (-) |
| ror1 | LOC106560470 | coding | downstream | 108691 | 86763372 ~ 87043134 (-) |
| cachd1 | cachd1 | coding | downstream | 439383 | 86556176 ~ 86712442 (-) |
| atg4c | atg4c | coding | upstream | 237842 | 87391661 ~ 87401413 (-) |
| angptl3 | LOC106584028 | coding | upstream | 265411 | 87419230 ~ 87424068 (-) |
| usp1 | usp1 | coding | upstream | 351930 | 87505749 ~ 87520050 (-) |
| LOC110522895 | NA | coding | upstream | 504110 | 87657929 ~ 87659520 (-) |
| LOC110523029 | LOC106584023 | coding | upstream | 531394 | 87685213 ~ 88049103 (-) |
| G451743 | NA | non-coding | downstream | 9149 | 87138595 ~ 87142676 (-) |
| G451742 | NA | non-coding | downstream | 10984 | 87138447 ~ 87140841 (-) |
| G451740 | NA | non-coding | downstream | 18174 | 87131017 ~ 87133651 (-) |
| G451706 | NA | non-coding | downstream | 56812 | 87040819 ~ 87095013 (-) |
| G451860 | NA | non-coding | upstream | 94786 | 87248605 ~ 87248829 (-) |
| G451863 | NA | non-coding | upstream | 114128 | 87267947 ~ 87268208 (-) |
| G451890 | NA | non-coding | upstream | 143037 | 87296856 ~ 87299127 (-) |
| G451935 | NA | non-coding | upstream | 229067 | 87382886 ~ 87383098 (-) |
| G451936 | NA | non-coding | upstream | 229435 | 87383254 ~ 87383483 (-) |
| G451286 | NA | other | downstream | 554081 | 86597352 ~ 86597744 (-) |
| G451271 | NA | other | downstream | 601947 | 86548838 ~ 86549878 (-) |
| G450957 | NA | other | downstream | 1272851 | 85877733 ~ 85878974 (-) |
| G450752 | NA | other | downstream | 1664667 | 85486842 ~ 85487158 (-) |
| G451856 | NA | other | upstream | 88035 | 87241854 ~ 87243233 (-) |
| G452255 | NA | other | upstream | 344547 | 87498366 ~ 87499136 (-) |
| G452442 | NA | other | upstream | 706308 | 87860127 ~ 87866464 (-) |
| G452457 | NA | other | upstream | 740913 | 87894732 ~ 87895212 (-) |
