atg4c (atg4c)


Basic Information

Item Value
gene id atg4c
gene name atg4c
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87391661 ~ 87401413 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604628.2
CATTTACGTTGCAGAATGACGCAAACACCGCGAGAGTCGCGTGCTTGGCTTGTGGTTTTGCTTCCTCAAAATGTAAACACTGGGAGCTGGTGAGATAGCCAGATACACACATTTCAGGAAGACAGTGCGGTTGTTAACGACGCTGGGATGAGTTCAATTTCCCGGTGGTCAAAATGGAGAATAAAGGGACTGATGAGGTGGAGAAATTGAAGACAAAGTTCTTGTCAGCATGGCACAATGTGAAGTACAGTTGGGCTTTGAAGTCAAAAACCTACTTTAGCAGAAATTCCCCAGTGTTCCTCCTGGGGAAATGCTACCATTTTAAGGCTGACGATGAGGATAGCCCAACAGAGAGCTGCAGCACTGAGGTCCGTGATGCACCCCCCGCCACAGGGGGTGACGACGTGGAGGCCTTCCGGAGGGACTTTGCGTCCCGTGTGTGGTTGACCTACAGAGAGGAGTTCCCTGCCCTGCCAGGCTCCTCCCTAACCTCTGACTGTGGCTGGGGCTGTATGCTGAGGGCGGGACAAATGATGCTGGCTCAGGCCCTCATACTACACTTCCTGGGCAGAGACTGGACGTGGTCGGAGGCGTTGGCCCTCCAGCCTCTGGACACAGAGACCTGGACCACCAGTGCAGCCAAGCGTCTGGTGGCCAGCCTGGAGGCCTCACTGCAGGGAGAGAGGCCCTCGTACCCAGGACCAATGCTTCATGCTCCAGGGGCCCCTGGAAGAGTGGAGGAGGCTGACATCCACCAGAGGGAGGTCTATCACCgcaccctggtgtcctggcttgGGGACAGCCCTCAGGCACAGCTGGGTGTCCACAGACTGGTGGAGTTAGGCCTGGTGTCTGGGAAACGGGCAGGGGACTGGTATGGCCCCGCCGTGGTGGCACACATCCTGAGAAAAGCTGTAGAGGAGGCAACAGACCCTGGGCTGTCGGGCATAACTGCTTATGTCTCCCAGGACTGTACAGTTTACAGTGCTGATGTCATCGATAGCCACCAGTCGTGTGTGGCTGGGGGAGCAGATGCCCTGCCCCTTACTGACAGCCGGGCGGTCATCATCTTCATCCCAGTCCGACTGGGGGGAGAGAAGACCAACCCAGAGTACTTCAGCTTTGTCAAGAGCATATTGAGTCTGGAGTACTGTATTGGTATCATCGGGGGCAAGCCCAAACAGGCCTGCTACTTCGTGGGCTTTCAAGATGACAGCTTGATTTACATGGACCCTCATTACTGTCAGTCTTTTGTGGATGTCAGCACTAACCATTTCCCTCTTCAGTCGTATCATTGCCCGTCGCCAAAGAAGATGCCTTTCAGTAAGATGGACCCCAGTTGTACCATAGGCTTTTACTCTAGAAGTGTCCAGGACTACCAGACAATCAGCCACGAACTGTCCAAGGTGTTGCTGCCGTCAGCGAATGAGAAATACCCAGCATTCACTTTCATGCAAGGTCACGGAAGAGATTACAACCTTTCGGCGGAGTTGACCCCGGAGAAGAGGGAATGGCCGTTTATCCGTGACCCACAGAGAGCAGCCGCTACCGCTGGAGACTTCGTGCTGCTCTGAAGGTCAACGCTGCGGTCAAAGGTCATGGTCAGAGACTTTTAAAATGACCAGCGAAGTGACTTTACCAGACAGACTGAAACCTGCTTATCCAAGGCCAGGACTCTATTCCACAATTATGAAAATACATAGCCAATATAAAAATGTTCTCACACCAGCATTCATGACTTAATACACGAAACCTAAACATATTAAAATTGTTATCTTATACTGTAGATAGTTGCTGTTAGTTTTGATTGTTCTGTGGAAATCGGTAACATAGGGCAAAGGATCAAACAAACATACCATGGGTCTGTAAGCGCTATGAGGTTGTACTGAGGGTTATGCGATGTACTGTATCTTGTACACTGTGCATTATTGATACAGATGGATAATTGGGTGCCTTGGCTTATTGGAAGACAAGCTCTCAACCAAATATAAAAGACATTTGCCTTGTAAGGAAATCAGTTCTGCACTTTAGGAGGCGGTAGTCATCAGAGGTTATGTGTGAGGATATCACTGTGGTTCTATAGCTGGGCCTTACAACACAGTGAAGTGCTATAGGAGAGTGTCATTCAGACTATTTTTTTTAGAAGTGTGTAGAAATACTTTGATAGTCCTGAAGGTTTTAATGGTCAAATATGTTCTAGGGTTACACTCTTATGATTTCAAGACCACATTTACATTAGGAGGAAAAGTTTTAGATTGCCAAATCATTTCAAGACGTCTTTGAATTTTCAAACAGCCATTTGAGAATTTCTGACCTTGAAAGGATACAGTACTTTTGTtcatgcattttttttatttcccaAAGCAAATTAATTGTCTAAATGGAAAGTTTTTCCAATGTCACAGTCAAACCCATCTATAGAGGTGACCGGTACAATGCCTTGCTTCTCTTTGTACTTTCACAATAATTACGAACTTTAAATATACGTTACCCACATACTAAGTTAATTGAGTAATCTCATTTAAATGGTGATATTTGTAGAAGCCACAATTTCTTATGTGGGTTGAATGTAATTGAAATGTTCAACTGTAAATGCATAAAGACAGCTACATTCTACCCGTGTTGCAAAATGTTCCCAGAATTCATCTCTTTATCACAGTATTGATTCTCACACTGCTGTGCAGCAAAGTAGAATAAAGTCATAAAACCTTTTGGATTTTCTGATCTGTGCACCTCTTTACAAgcattaaagagagagagatatctctTGGAAAAACA

Function

symbol description
atg4c Predicted to enable cysteine-type endopeptidase activity. Predicted to act upstream of or within autophagy; protein transport; and proteolysis. Predicted to be located in cytoplasm. Orthologous to human ATG4C (autophagy related 4C cysteine peptidase).

NR:

description
cysteine protease ATG4C

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0015031 protein transport biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604628.2 True 2778 mRNA 0.47 11 87391661 87401413
Loading

Neighbor

gene id symbol gene type direction distance location
foxd3 foxd3 coding downstream 237842 87151825 ~ 87153819 (-)
alg6 alg6 coding downstream 247320 87108000 ~ 87144341 (-)
efcab7 efcab7 coding downstream 297767 87071831 ~ 87093894 (-)
pgm1 LOC106560477 coding downstream 323962 87055034 ~ 87067699 (-)
ror1 LOC106560470 coding downstream 348527 86763372 ~ 87043134 (-)
angptl3 LOC106584028 coding upstream 17817 87419230 ~ 87424068 (-)
usp1 usp1 coding upstream 104336 87505749 ~ 87520050 (-)
LOC110522895 NA coding upstream 256516 87657929 ~ 87659520 (-)
LOC110523029 LOC106584023 coding upstream 283800 87685213 ~ 88049103 (-)
LOC110524751 LOC106560521 coding upstream 861162 88262575 ~ 88268140 (-)
G451940 NA non-coding downstream 3122 87388269 ~ 87388539 (-)
G451936 NA non-coding downstream 8178 87383254 ~ 87383483 (-)
G451935 NA non-coding downstream 8563 87382886 ~ 87383098 (-)
G451890 NA non-coding downstream 92534 87296856 ~ 87299127 (-)
G451863 NA non-coding downstream 123453 87267947 ~ 87268208 (-)
G452274 NA non-coding upstream 65491 87466904 ~ 87467595 (-)
G452248 NA non-coding upstream 91723 87493136 ~ 87493960 (-)
G452330 NA non-coding upstream 182778 87584191 ~ 87666309 (-)
G452348 NA non-coding upstream 225840 87627253 ~ 87690633 (-)
G452370 NA non-coding upstream 290670 87692083 ~ 87692343 (-)
G451856 NA other downstream 148428 87241854 ~ 87243233 (-)
G451286 NA other downstream 793917 86597352 ~ 86597744 (-)
G451271 NA other downstream 841783 86548838 ~ 86549878 (-)
G450957 NA other downstream 1512687 85877733 ~ 85878974 (-)
G452255 NA other upstream 96953 87498366 ~ 87499136 (-)
G452442 NA other upstream 458714 87860127 ~ 87866464 (-)
G452457 NA other upstream 493319 87894732 ~ 87895212 (-)
G452504 NA other upstream 582547 87983960 ~ 87984633 (-)

Expression

atg4c(atg4c) Expression in all Baseline Samples

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atg4c(atg4c) Expression in each Bioproject

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atg4c(atg4c) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network