Item | Value |
---|---|
gene id | usp1 |
gene name | usp1 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048569.1 |
NCBI id | CM023223.2 |
chromosome length | 100798064 |
location | 87505749 ~ 87520050 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
usp1 | Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within regulation of DNA repair and ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human USP1 (ubiquitin specific peptidase 1). |
description |
---|
ubiquitin carboxyl-terminal hydrolase 1-like isoform X2 |
id | description |
---|---|
K11832 | USP1; ubiquitin carboxyl-terminal hydrolase 1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021603307.2 | False | 4960 | mRNA | 0.47 | 9 | 87505749 | 87520049 |
XM_021603308.2 | True | 4958 | mRNA | 0.47 | 9 | 87505749 | 87520050 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
angptl3 | LOC106584028 | coding | downstream | 81681 | 87419230 ~ 87424068 (-) |
atg4c | atg4c | coding | downstream | 104336 | 87391661 ~ 87401413 (-) |
foxd3 | foxd3 | coding | downstream | 351930 | 87151825 ~ 87153819 (-) |
alg6 | alg6 | coding | downstream | 361408 | 87108000 ~ 87144341 (-) |
efcab7 | efcab7 | coding | downstream | 411855 | 87071831 ~ 87093894 (-) |
LOC110522895 | NA | coding | upstream | 137879 | 87657929 ~ 87659520 (-) |
LOC110523029 | LOC106584023 | coding | upstream | 165163 | 87685213 ~ 88049103 (-) |
LOC110524751 | LOC106560521 | coding | upstream | 742525 | 88262575 ~ 88268140 (-) |
ap1m3 | LOC106560519 | coding | upstream | 785878 | 88305928 ~ 88348088 (-) |
c5h1orf210 | LOC106560518 | coding | upstream | 828283 | 88348333 ~ 88355068 (-) |
G452248 | NA | non-coding | downstream | 11789 | 87493136 ~ 87493960 (-) |
G452274 | NA | non-coding | downstream | 38154 | 87466904 ~ 87467595 (-) |
G451940 | NA | non-coding | downstream | 117210 | 87388269 ~ 87388539 (-) |
G451936 | NA | non-coding | downstream | 122266 | 87383254 ~ 87383483 (-) |
G451935 | NA | non-coding | downstream | 122651 | 87382886 ~ 87383098 (-) |
G452330 | NA | non-coding | upstream | 64141 | 87584191 ~ 87666309 (-) |
G452348 | NA | non-coding | upstream | 107203 | 87627253 ~ 87690633 (-) |
G452370 | NA | non-coding | upstream | 172033 | 87692083 ~ 87692343 (-) |
G452375 | NA | non-coding | upstream | 186227 | 87706277 ~ 87706486 (-) |
G452376 | NA | non-coding | upstream | 186599 | 87706649 ~ 87706934 (-) |
G452255 | NA | other | downstream | 6613 | 87498366 ~ 87499136 (-) |
G451856 | NA | other | downstream | 262516 | 87241854 ~ 87243233 (-) |
ror1 | LOC106560470 | other | downstream | 739762 | 86763372 ~ 87043134 (-) |
G451286 | NA | other | downstream | 908005 | 86597352 ~ 86597744 (-) |
G451271 | NA | other | downstream | 955871 | 86548838 ~ 86549878 (-) |
G452442 | NA | other | upstream | 340077 | 87860127 ~ 87866464 (-) |
G452457 | NA | other | upstream | 374682 | 87894732 ~ 87895212 (-) |
G452504 | NA | other | upstream | 463910 | 87983960 ~ 87984633 (-) |
G452517 | NA | other | upstream | 485869 | 88005919 ~ 88006587 (-) |