LOC110524751 (LOC106560521)


Basic Information

Item Value
gene id LOC110524751
gene name LOC106560521
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 88262575 ~ 88268140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604649.2
ATAAATCGAATATATGTCGGAAATTCACACGAAGAAGGTTTATTGTCCTCTGTTCCTTTTTTCACGAGTTATACATGAGAGCTGTAGACAGCTGCAAAATAAAACTTCGGATAGGAACATTTGATTACTTCGGGGCGGGTGTTTCACCGGAAGATATTTTCGGTGTACCCTTTACAGACGCCAATTCCTTCTCACGTCAACCGCTCCATGTGAGCACGGATTTTATGGTATTTGGTCCACAAAATCACTGTTTGTATCCAGTCATTCTCGTTAACAATACCATGGATATTATTGAAGATGACGAGCAGTTAGGTGAGACGTCTGAGCAGGACAGCGAATTATCTGACGGAGAGCTTCAAGATGCATTCGCAAAGGGATTGTTAAAGCCTGGGTTGAACTTTACAACACAAGAACCGAAGAAGATTGTCAACAATGTGGAGGGTTTGAAACAATGCCTCGCTGACTTTCGTAAGAACACACTACCCTGGATAGAGAGGCTGGACATGGTCAATCTCCCCGCTGATGACATCGTTGCCAAGTCCGAGGGCAGACTCGACAACAAGGCCAGCGAAGACATCAACCCAGATGACGACTTCCAGAGAGAGATGTTCTTTTACCGTCAAGCCCAAGAAGCTGTTCTGGAAGCGATGCCCCGGCTACTGAAGCTGAAGATAGCCACCAAGAGACCTGAGGACTACTTTGCAGAGATGGCCAAGTCAGACCAGCAAATGCAGAAGATCAGGAAGAAACTCATCACGAAGCAGATCATGATGGGGAAGTCGGAAAAGGCCAAGAAACTAAGAGAACAGAGGAAGTATGGCAAGAAGGTACAAGTAGAGGTTATtcagaagagacagagggagaagaaggCCATGATGTCTTCAGTGAAGAGGTATCAAAAAGGCATGACTGACAAACTGGACTTCCTGGAAGGAGATCAGAAGACTGCTAAAGGAGGCGCTCCAGCTAAAGGAGGTGCAGGGAAAGGGGCCGGTGGCCAAACACCTGATAAAAAGGCCATGAACAAGAAAGGGCCCAATGCTAAGAGGAAGTATAAAGACCAGAGGTTTGGCTTTGGCGGGAAGAAGAGTGGAACCAAGTGGAACACCAAGGACAGCCACAACGATGTGTCAGGGTTCCGAGCCAAGGTGGCTCATGGGaaaggaggaaagggagggaaaggaggcAAAGCAGGACCAGGCGGAAGGGGCCCCACCAAAGGAGGGGCTAAACGACCGGGCAAGAACGCACGCAAGAAGATGAAGGGTCGCTcctaaagagAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTATTGTATCACCAAGACGACAAGCTTTAGAATGTCTCCATATGAAAACCAGACAGAGCGGTACTAAAcatgccaaattcaatgttttttttaaatggtttaaaCCTCTAACATGAATATGGACATCAACGGTACAATGACATTTTATTATCGGCAGTAAAATAAATCCATGTATCTTTTAAAGGAGATCTTTATACTTTGTTGTAGGGCGTCTACGTTTGTGAAACTATTTCCACAAATGTATGTCATCTAGTTTGAGTAAATACTTGATAGATTTTTGTAAAATGCACACTTTGCAAGTCTGCTTATTGACCCCCTGATTCACTACCTTTAGGGATGTGATATTTTCTAATATTGAACAGCTGTCGTGTTTGGCCTTTTCCATGTATCAATATTATTAATGTGTAGTGGGCCAATGTATTACTTTCTATAGATCTGGGTAAATGTTTCTTCTGCAAACAGGTTGCAGGTATGACAATAGTTGGTACATTTTGGGCAAGAACCCCTTctctagcctgagtgccagtctgtgcTATTATACCAACTAATTTCATGCTGAGTTTTGCTTGACAATGACTGATGGAgatggcaagagcacaaacagggACCAGGCTACACCTGCATCTGTTTAACTTGAATGAATGATTAGTATGCTGCTTCATGTTTCTCATGTGTGGTGTTtgttataaactgggtgtttCAAGCCTTGGATGCTGATTgactgaaagccgtggtatacggtctgatataccacgggtGTGACTATTTATTTTCACtcttctaattatgttggtaaccagtttataatagcattaaggcaccttgggggtttgtggtacatggtcaatataccatggctacaggttgtatccaggcactctgcgttgcacacaagaacagcccttagctgtggtatattggccatataccacacccccttgggccttattgcttaattacagTAGGTCTGCCTGCAACCAGTTACATTGTATTTCCTTTGGACAGTAAAGTATTATTCTTCATA
>XR_002473645.2
ATAAATCGAATATATGTCGGAAATTCACACGAAGAAGGTTTATTGTCCTCTGTTCCTTTTTTCACGAGTTATACATGAGAGCTGTAGACAGCTGCAAAATAAAACTTCGGATAGGAACATTTGATTACTTCGGGGCGGGTGTTTCACCGGAAGATATTTTCGGTGTACCCTTTACAGACGCCAATTCCTTCTCACGTCAACCGCTCCATGTGAGCACGGATTTTATGGTATTTGGTCCACAAAATCACTGTTTGTATCCAGTCATTCTCGTTAACAATACCATGGATATTATTGAAGATGACGAGCAGTTAGGTGAGACGTCTGAGCAGGACAGCGAATTATCTGACGGAGAGCTTCAAGATGCATTCGCAAAGGGATTGTTAAAGCCTGGGTTGAACTTTACAACACAAGAACCGAAGAAGATTGTCAACAATGTGGAGGGTTTGAAACAATGCCTCGCTGACTTTCGTAAGAACACACTACCCTGGATAGAGAGGCTGGACATGGTCAATCTCCCCGCTGATGACATCGTTGCCAAGTCCGAGGGCAGACTCGACAACAAGGCCAGCGAAGACATCAACCCAGATGACGACTTCCAGAGAGAGATGTTCTTTTACCGTCAAGCCCAAGAAGCTGTTCTGGAAGCGATGCCCCGGCTACTGAAGCTGAAGATAGCCACCAAGAGACCTGAGGACTACTTTGCAGAGATGGCCAAGTCAGACCAGCAAATGCAGAAGATCAGGAAGAAACTCATCACGAAGCAGATCATGATGGGGAAGTCGGAAAAGGCCAAGAAACTAAGAGAACAGAGGAAGTATGGCAAGAAGGTACAAGTAGAGGTTATtcagaagagacagagggagaagaaggCCATGATGTCTTCAGTGAAGAGGTATCAAAAAGGCATGACTGACAAACTGGACTTCCTGGAAGGAGATCAGAAGACTGCTAAAGGAGGCGCTCCAGCTAAAGGAGGTGCAGGGAAAGGGGCCGGTGGCCAAACACCTGATAAAAAGGCCATGAACAAGAAAGGGCCCAATGCTAAGAGGAAGTATAAAGACCAGAGGTTTGGCTTTGGCGGGAAGAAGAGTGGAACCAAGTGGAACACCAAGGACAGCCACAACGATGTGTCAGGGTTCCGAGCCAAGGTGGCTCATGGGaaaggaggaaagggagggaaaggaggcAAAGCAGGACCAGGCGGAAGGGGCCCCACCAAAGGAGGGGCTAAACGACCGGGCAAGAACGCACGCAAGAAGATGAAGGGTCGCTcctaaagaggtgtgtgtgtgttgtctttggTCTTTGCCACACTGCATCCCAACTTCTGGAAGGAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTATTGTATCACCAAGACGACAAGCTTTAGAATGTCTCCATATGAAAACCAGACAGAGCGGTACTAAAcatgccaaattcaatgttttttttaaatggtttaaaCCTCTAACATGAATATGGACATCAACGGTACAATGACATTTTATTATCGGCAGTAAAATAAATCCATGTATCTTTTAAAGGAGATCTTTATACTTTGTTGTAGGGCGTCTACGTTTGTGAAACTATTTCCACAAATGTATGTCATCTAGTTTGAGTAAATACTTGATAGATTTTTGTAAAATGCACACTTTGCAAGTCTGCTTATTGACCCCCTGATTCACTACCTTTAGGGATGTGATATTTTCTAATATTGAACAGCTGTCGTGTTTGGCCTTTTCCATGTATCAATATTATTAATGTGTAGTGGGCCAATGTATTACTTTCTATAGATCTGGGTAAATGTTTCTTCTGCAAACAGGTTGCAGGTATGACAATAGTTGGTACATTTTGGGCAAGAACCCCTTctctagcctgagtgccagtctgtgcTATTATACCAACTAATTTCATGCTGAGTTTTGCTTGACAATGACTGATGGAgatggcaagagcacaaacagggACCAGGCTACACCTGCATCTGTTTAACTTGAATGAATGATTAGTATGCTGCTTCATGTTTCTCATGTGTGGTGTTtgttataaactgggtgtttCAAGCCTTGGATGCTGATTgactgaaagccgtggtatacggtctgatataccacgggtGTGACTATTTATTTTCACtcttctaattatgttggtaaccagtttataatagcattaaggcaccttgggggtttgtggtacatggtcaatataccatggctacaggttgtatccaggcactctgcgttgcacacaagaacagcccttagctgtggtatattggccatataccacacccccttgggccttattgcttaattacagTAGGTCTGCCTGCAACCAGTTACATTGTATTTCCTTTGGACAGTAAAGTATTATTCTTCATA

Function

NR:

description
probable rRNA-processing protein EBP2

GO: NA

KEGG:

id description
K14823 EBP2, EBNA1BP2; rRNA-processing protein EBP2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604649.2 False 2697 mRNA 0.44 10 88262575 88268140
XR_002473645.2 True 2753 mRNA 0.44 10 88262575 88268140

Neighbor

gene id symbol gene type direction distance location
LOC110523029 LOC106584023 coding downstream 213472 87685213 ~ 88049103 (-)
LOC110522895 NA coding downstream 603055 87657929 ~ 87659520 (-)
usp1 usp1 coding downstream 742525 87505749 ~ 87520050 (-)
angptl3 LOC106584028 coding downstream 838507 87419230 ~ 87424068 (-)
atg4c atg4c coding downstream 861162 87391661 ~ 87401413 (-)
ap1m3 LOC106560519 coding upstream 37788 88305928 ~ 88348088 (-)
c5h1orf210 LOC106560518 coding upstream 80193 88348333 ~ 88355068 (-)
orc1 orc1 coding upstream 133790 88401930 ~ 88412796 (-)
LOC110524758 LOC106560512 coding upstream 149277 88417417 ~ 88419175 (-)
LOC110522897 tspan1 coding upstream 172362 88440502 ~ 88469581 (-)
G452852 NA non-coding downstream 9228 88252965 ~ 88253347 (-)
G452843 NA non-coding downstream 27653 88234644 ~ 88234922 (-)
G452842 NA non-coding downstream 28246 88234117 ~ 88234329 (-)
G452840 NA non-coding downstream 30769 88231607 ~ 88231806 (-)
G452639 NA non-coding downstream 102953 88159360 ~ 88159622 (-)
G452874 NA non-coding upstream 31060 88299200 ~ 88299672 (-)
G452875 NA non-coding upstream 31836 88299976 ~ 88300300 (-)
G452878 NA non-coding upstream 33258 88301398 ~ 88303026 (-)
G452885 NA non-coding upstream 60181 88328321 ~ 88329273 (-)
G452575 NA other downstream 187570 88074594 ~ 88075005 (-)
G452517 NA other downstream 255988 88005919 ~ 88006587 (-)
G452504 NA other downstream 277942 87983960 ~ 87984633 (-)
G452457 NA other downstream 367363 87894732 ~ 87895212 (-)
G452442 NA other downstream 396111 87860127 ~ 87866464 (-)
G452999 NA other upstream 327311 88595451 ~ 88596395 (-)
mast2 LOC106560530 other upstream 883600 89140981 ~ 89465997 (-)
G453823 NA other upstream 966085 89229699 ~ 89236608 (-)
G453915 NA other upstream 1173444 89441584 ~ 89442377 (-)
trmt1l trmt1l other upstream 1540895 89798954 ~ 89812313 (-)

Expression


Co-expression Network