XLOC_023004 (sh3glb1a)


Basic Information

Item Value
gene id XLOC_023004
gene name sh3glb1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 28383278 ~ 28397902 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045674
GATACCGGACGCTTCTCGGGGCCCAGGTCCGGATCTGGGCCCTCAGTAATCAGATCTGTGGGTGGTTCTTCCTCTTCTCCGCCGGCTGTTGCTTCTGTCTTAGTTTAACAAAAACACGGACGCTGTAATAAAGGATCAAATTTGATGCCATCAAATTTGTTTACGCCATCTTGACGCACAAACTTGTCAATTAATAGTTTTATACTGGACGAATAAAGATGGACTTTAACGTGAAGAGATTTGCAGCAGACGCTGGTACTTTATTCAGTCGGGCGGTGCAATTCACAGAAGAAAAATTCGGTCAGGCTGAGAAGACAGAACTGGACGCACATTTGGAGACCCTCCTCACGAGAGCTGAATGCACTAAACACTGGACAGAGAAGATTTTAAAGCAAACAGAAGTGCTACTGCAGCCAAACCCAAATGCCAGAATAGAAGAACTATTGTATGAAAAACTCGACAAGAAGGCCCCACCACGGATGAACAACCATGAGCTTATGGGTCAGTCTATGATCGACTCTGGGAATGAATTTGGGCCTGGAACAGCCTATGGAAATGCTCTGATAAAGTGTGGCGAGACAGAAAAGCAGATTGGAGGAGCGGAGCGAGAGTTCATTCAGACCTCTGCCATTAATTTTCTCACGCCTTTCCGCAACTTTCTAGAAGGAGACTTCAAGACTATATTGAAAGAGCGCAAACTGCTTCAGAACAAACGATTGGACCTTGATGCGGCAAAGACCAAGCTAAAGAAAGCAAAAATGGCTGATGCCAGAGCTGTGGCCGAGCAGGATCTGAAGATGACACAGAGTGAGTTCGACAGACAGGCGGAAATCACCAGGCTTCTTCTGGAAGGAATTAGCAGTACACATGCACATCATCTCCGATGTCTTAATGACTTTGTGGAGGCTCAGATGACATATTACGCCCAGTGTTACCAGTACATGGTCGACCTCCAAAAGCAGTTGGGAAACTTTCCTTCTGCTTTCACTTCCAACAATAACCAGTCCACGGCCAGCGGTGGAGCCGGTGTTTCTGTACCAATCCTGCCACTATCAACTCCTCTTCCCTCCACCACAAGCAACACGTCCTCAGGTTTCACCGAAATGCAGAACTTCAGCGGGAGCCGTAAAGCGCGAGTGCTGTACGATTACGATGCCGCCGGTAGCAATGAACTCTCTTTATTGGCCGATGAGGTGATCATGGTGAGCAGCGTTCCAGGCatggactctgattggctgatgggggAACGTGGAAGTCAGAAGGGAAAAGTGCCTATTACCTATTTGGAGCTGTTAAATTAAGAGGAATTGAGAGTTGTTGGAACCAAAACGGAGAGGTATGGTGAAATCCAGCTGTGCTGCGTAACATATGCAGCGTTTGACGTCTTGTGCGGCTCATATGCAACAGTATTTCATTGGACGTGACGTCTTAAAGTCCCAGTTTGGGAAGAGGTTCTAACTCAAGGACTGTTTACAAATGAATTAATgcagaatatttaaaaacaaacaaacaaacaaacaaacaaacaaacaaaaagccttTGATGTGATTACCGCCAACATGCCTCCATATTAATATACAAAACTACAAAAGTGACTTATTTGAGTTTCTACATGCGTTTACAAGAGTAAAGTATTAAGACTGATTGCCATTTTAATGGATTTTAAAAGTGGCTTTCTTGTACATGAACTCATTTCAGCATTTCTAGTACGTTTTATAAGATTTCATGTAGAGGTCAAAATATGCCATAATTTATTTTCAGGGTTATTCTGCTTGGGTGTAGCTGACATTTGTTATTATCTGATGCagtttacatttttctttattgcatttgAGCACACAGAAAATGCTTTATTTGCACGCAGATGGCCTTTTTTGTTATGCATTATGAAACCGTGTCCTTTATATTTGCAGTGTTAAAAAAAGCACATGATCCAGTTATTCATTTCATAATAAAAGCAGCATCTCTTTACTGataattgtactttttttatATACCCATGTGCCTTACAATCGTCTTAAGATTGATGTTTTTAGAtttgtttaaagcaaaaaaaaaaaa

Function

symbol description
sh3glb1a Predicted to act upstream of or within apoptotic process. Predicted to be located in Golgi membrane and mitochondrial outer membrane. Orthologous to human SH3GLB1 (SH3 domain containing GRB2 like, endophilin B1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-89 Predicted to act upstream of or within apoptotic process. Predicted to be located in Golgi membrane and mitochondrial outer membrane. Orthologous to human SH3GLB1 (SH3 domain containing GRB2 like, endophilin B1).

Ensembl:

ensembl_id ENSDARG00000045294

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045674 True 2062 mRNA 0.42 9 28383278 28397902
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_023003 CU694811.1 coding upstream 45209 28337955 ~ 28338069 (+)
XLOC_023002 NA coding upstream 141752 28229649 ~ 28241526 (+)
XLOC_023001 ek1 coding upstream 668040 27548474 ~ 27715238 (+)
XLOC_023000 cxcl32b.1 coding upstream 870427 27511734 ~ 27512851 (+)
XLOC_022999 CT574575.1 coding upstream 898219 27484936 ~ 27485059 (+)
XLOC_023005 CT955984.1 coding downstream 12749 28410651 ~ 28443209 (+)
XLOC_023006 arhgap29a coding downstream 50485 28448387 ~ 28557301 (+)
XLOC_023007 abca4a coding downstream 163136 28561038 ~ 28645334 (+)
XLOC_023008 NA coding downstream 253114 28651016 ~ 28809286 (+)
XLOC_023009 BX548035.1 coding downstream 350199 28748101 ~ 28748217 (+)
XLOC_022998 CR383669.5 non-coding upstream 971025 27412139 ~ 27412253 (+)
XLOC_022997 NA non-coding upstream 989892 27375712 ~ 27393386 (+)
XLOC_023011 NA non-coding downstream 577086 28974988 ~ 29156535 (+)
XLOC_023012 FP245452.1 non-coding downstream 705491 29103393 ~ 29103509 (+)
XLOC_023013 NA non-coding downstream 806255 29204157 ~ 29224456 (+)

Expression

Expression of XLOC_023004(sh3glb1a) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Expression of XLOC_023004(sh3glb1a) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000082_01188424_01190771 NA coding CI01000082 null 1188424 ~ 1191676 (+)
rainbow trout (Oncorhynchus mykiss) G953836 sh3glb1 non-coding NC_048575.1 CM023229.2 21376105 ~ 21395909 (+)