ap1m3 (LOC106560519)


Basic Information

Item Value
gene id ap1m3
gene name LOC106560519
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 88305928 ~ 88348088 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978661.1
tttcgttccgtttgGATCTGTTTGGTTCGTAGTGAAGACATCGCTGAggtgtattcattacgccgaATCTGTTGCTAAACGTTTCAGTTGGACAAATTCCGGTGTTGATCAGTCGTAACTACATGGGAAACATGGACATGAATGAGGTCGACCACTTCATGCCCATTATGATGAGGATGGAGGAGGACGCAGACTCATCGCCCCTGGTGACACACGGCTCCGCCCACTTCCTGTGGATCAAACACAGAAACCTCTACTTGGTGGCAATGACCAAGAAGAATGCCAATGCAGCCCTGGTCTACTCCTTCCTCTACAAAATGGTGGAGGTGTTTAAGGAGTACTTtaaggagctggaggaggagagtaTCCGTGACAACTTTGTGACGGTGTATGAGCTGATGGACGAGGTCATGGACTTTGGCTTCCCTCAGACCACAGACAGCAAGATCCTGCAAGAGTACATCACCCAACAGGGTCACAAGCTGGATGTGGGCGCCCCTCGCCCCCCCGCCACCGTCACCAACGCTGTGTCCTGGAGGTCGGAGGGCATCAAGTACAGGAAGAACGAGGTGTTCATGGACGTCATCGAGTCCGTCAACTTACTGGTGAGTGCTACCGGCAGTGTCCTGCGTAGTGAGATCGTGGGCAGCATCAAGCTCAAGGTGGTCCTGTCTGGGATGCCTGAACTCAGACTGGGCCTCAACGACAAAGTGCTCTTTGAAATCACAGGACGAGAGAAAAGTAAGACGGTAGAGCTGGAGGATGTCAAGTTCCATCAATGTGTCCGTCTGTCCCGCTTCGAGAACGACCGCACCATCTCCTTCATCCCCCCTGACGGAGAGTCCGAGCTCATGTCCTACCGCCTCAACACCACGGTGAAGCCTCTGATATGGATTGAGAGTGTGATTGAGAAGTTCTCCCACAGCCGAGTGGAGATCAAGGTTAAGGCCAGGAGTCAGTTTAAGAGTCGCTCCACTGCCAACAATGTGGCCATCATGGTACCTGTGCCCAGCGATGCCGACTCGCCCAAATTCAAGACGAGCACAGGCAGCTGCAAGTATCTTCCCGAGAAGAGCGTGGTGCAGTGGAACATCAAGTCCTTCCCTGGGGGGAAAGAGTACATGATGAGGGCTCACTTTGGTCTGCCTAGTGTGGAGAGTACTGAGTTGGAGGGGAGAAGGCCCATCACTGTGAACTTTGAGATCCCCTATTTCACTGTATCTGGTATCCAGGTACGCTATCTGAAGATCATTGAGAAAAGTGGCTATGAGGCCTTACCATGGGTACGCTATATAACACAGAgtggagATTATCAACTCCGGACAAACTAAGGGCGAGCCTGCTTCTAGACAAATATATcgtcaatctctccctctctctgggagtGAGGGACAACACAGGACAAGGAAAGGGGAACTTTCACCACTGTCAATTCTCAAAGGACCATGTAGTCATCTTGCAGACATGAGGACCTTCAAGACTCAATTTCCCTTCAGAACTCGACTGTTGTCACCTTCGACCTTTGCTGTGTTACATCATCTGGAGAAACATGTTTTATCTTTTTAGAATAATGAACTTAGTGGTTTTCTTACTGGTCACATTGTAAACATTTGTATAGTTGTATTTTCTTCTTAAAGCTGGAAGAATTCAGGACATTTATGATCTCTGAAGTGTGAACGTTGAAACCTGTGTACAGCATTGATATAAAATGATATCTGGTTGGTGTGGATGCTAGCGGTTGACGTTATCTTGGGGCCAGCTGTAAGCATATAATCCCCACTGTGTCCAATGAGATGAACACCAAGATAATGAATAGGCCTGCATAATATCAGCAGCTGTGTATTACCATATTGTTGTCACAGTTCCTAGACATGTGCTTGTACTCAGCTGATGACTACGAGGAAAAGACTGAAGGAATTCTCTGTGTGCAAATTACAATTATGTAGTGTTTCTAACAGTCTTGTGATACAGACACATTTAACGCCTCGAGGAAAAGCCACGATCAAAATAAGTAAACCAATAATACAGGTGGTCCGATATCAAGAGAATGTTGTTTAGATAGGAAACAAAGTGAACATATCTATGTCAATGTGTCCCCACCAAACATACACCCAACTTTTTCAAAGCAGCTATTggttggtatggttacagtagTATGTTGTGCGTGCAATGCATCACCCCTCATATCAGTTCTGGTTCTCTATGCCAGGGAAATAGCTCTGATTCTCTCTGCCAGGGAAATAGCTCTGGTATGCTGTGTGTAGGCATACTGTATGAAATCCAGACCTGGTTTCAAATACATGTTTATTTGAGTATTTCTTATTTAAATACACATTTTCTGTATATTTGAGTATTCTCAAATGTGGTGAATCAACTTTTTTTCAaaatactattttcaaatacCTGGGATAGATGCATGGGAGTATATTTGAGACAGTCTATTTGAATATTTTGaaatactttccaagtgtatttccaaatatattccaatattcaactacttgtttttccaaataaaaaataaatacttaCTTCCAGATGTCTTTGAAAGTAATTGAAATAGCCTAAATAGTatgtgaacccaggtctgataatCTCATATTAAACCATCCATATAAAATGGCTGATTATGAGGAACAGGACAAATATGACTACACTCGTCCAGATATTCTCTCCAGTGGGGGTTTAATGATTGAAAACCACAATCTATTAATATCTTATTTATTAACCTCTATGTCAATGGGAGACAAAGGGATCTAgatagaaataaataaattacttTGTACCTTA
>XM_036978660.1
CGAAATACTACCCGGAAAGAGCAGTGGCGTGCATTAGACAACAGCGCGTGAGATGGGAGATGCACTGAATGAAATGTTGTAAGGGATATTCAACgtcaaatatttatattttttgtgctATTAGTTTATTAGGATGTCGGCGTCTGCTATATTCATCCTGGACCTTAAAGGAAAGGTGTTGATCAGTCGTAACTACATGGGAAACATGGACATGAATGAGGTCGACCACTTCATGCCCATTATGATGAGGATGGAGGAGGACGCAGACTCATCGCCCCTGGTGACACACGGCTCCGCCCACTTCCTGTGGATCAAACACAGAAACCTCTACTTGGTGGCAATGACCAAGAAGAATGCCAATGCAGCCCTGGTCTACTCCTTCCTCTACAAAATGGTGGAGGTGTTTAAGGAGTACTTtaaggagctggaggaggagagtaTCCGTGACAACTTTGTGACGGTGTATGAGCTGATGGACGAGGTCATGGACTTTGGCTTCCCTCAGACCACAGACAGCAAGATCCTGCAAGAGTACATCACCCAACAGGGTCACAAGCTGGATGTGGGCGCCCCTCGCCCCCCCGCCACCGTCACCAACGCTGTGTCCTGGAGGTCGGAGGGCATCAAGTACAGGAAGAACGAGGTGTTCATGGACGTCATCGAGTCCGTCAACTTACTGGTGAGTGCTACCGGCAGTGTCCTGCGTAGTGAGATCGTGGGCAGCATCAAGCTCAAGGTGGTCCTGTCTGGGATGCCTGAACTCAGACTGGGCCTCAACGACAAAGTGCTCTTTGAAATCACAGGACGAGAGAAAAGTAAGACGGTAGAGCTGGAGGATGTCAAGTTCCATCAATGTGTCCGTCTGTCCCGCTTCGAGAACGACCGCACCATCTCCTTCATCCCCCCTGACGGAGAGTCCGAGCTCATGTCCTACCGCCTCAACACCACGGTGAAGCCTCTGATATGGATTGAGAGTGTGATTGAGAAGTTCTCCCACAGCCGAGTGGAGATCAAGGTTAAGGCCAGGAGTCAGTTTAAGAGTCGCTCCACTGCCAACAATGTGGCCATCATGGTACCTGTGCCCAGCGATGCCGACTCGCCCAAATTCAAGACGAGCACAGGCAGCTGCAAGTATCTTCCCGAGAAGAGCGTGGTGCAGTGGAACATCAAGTCCTTCCCTGGGGGGAAAGAGTACATGATGAGGGCTCACTTTGGTCTGCCTAGTGTGGAGAGTACTGAGTTGGAGGGGAGAAGGCCCATCACTGTGAACTTTGAGATCCCCTATTTCACTGTATCTGGTATCCAGGTACGCTATCTGAAGATCATTGAGAAAAGTGGCTATGAGGCCTTACCATGGGTACGCTATATAACACAGAgtggagATTATCAACTCCGGACAAACTAAGGGCGAGCCTGCTTCTAGACAAATATATcgtcaatctctccctctctctgggagtGAGGGACAACACAGGACAAGGAAAGGGGAACTTTCACCACTGTCAATTCTCAAAGGACCATGTAGTCATCTTGCAGACATGAGGACCTTCAAGACTCAATTTCCCTTCAGAACTCGACTGTTGTCACCTTCGACCTTTGCTGTGTTACATCATCTGGAGAAACATGTTTTATCTTTTTAGAATAATGAACTTAGTGGTTTTCTTACTGGTCACATTGTAAACATTTGTATAGTTGTATTTTCTTCTTAAAGCTGGAAGAATTCAGGACATTTATGATCTCTGAAGTGTGAACGTTGAAACCTGTGTACAGCATTGATATAAAATGATATCTGGTTGGTGTGGATGCTAGCGGTTGACGTTATCTTGGGGCCAGCTGTAAGCATATAATCCCCACTGTGTCCAATGAGATGAACACCAAGATAATGAATAGGCCTGCATAATATCAGCAGCTGTGTATTACCATATTGTTGTCACAGTTCCTAGACATGTGCTTGTACTCAGCTGATGACTACGAGGAAAAGACTGAAGGAATTCTCTGTGTGCAAATTACAATTATGTAGTGTTTCTAACAGTCTTGTGATACAGACACATTTAACGCCTCGAGGAAAAGCCACGATCAAAATAAGTAAACCAATAATACAGGTGGTCCGATATCAAGAGAATGTTGTTTAGATAGGAAACAAAGTGAACATATCTATGTCAATGTGTCCCCACCAAACATACACCCAACTTTTTCAAAGCAGCTATTggttggtatggttacagtagTATGTTGTGCGTGCAATGCATCACCCCTCATATCAGTTCTGGTTCTCTATGCCAGGGAAATAGCTCTGATTCTCTCTGCCAGGGAAATAGCTCTGGTATGCTGTGTGTAGGCATACTGTATGAAATCCAGACCTGGTTTCAAATACATGTTTATTTGAGTATTTCTTATTTAAATACACATTTTCTGTATATTTGAGTATTCTCAAATGTGGTGAATCAACTTTTTTTCAaaatactattttcaaatacCTGGGATAGATGCATGGGAGTATATTTGAGACAGTCTATTTGAATATTTTGaaatactttccaagtgtatttccaaatatattccaatattcaactacttgtttttccaaataaaaaataaatacttaCTTCCAGATGTCTTTGAAAGTAATTGAAATAGCCTAAATAGTatgtgaacccaggtctgataatCTCATATTAAACCATCCATATAAAATGGCTGATTATGAGGAACAGGACAAATATGACTACACTCGTCCAGATATTCTCTCCAGTGGGGGTTTAATGATTGAAAACCACAATCTATTAATATCTTATTTATTAACCTCTATGTCAATGGGAGACAAAGGGATCTAgatagaaataaataaattacttTGTACCTTA

Function

NR:

description
AP-1 complex subunit mu-2-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K12393 AP1M; AP-1 complex subunit mu

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978661.1 False 2790 mRNA 0.44 12 88305928 88345287
XM_036978660.1 True 2864 mRNA 0.44 12 88305928 88348088

Neighbor

gene id symbol gene type direction distance location
LOC110524751 LOC106560521 coding downstream 37788 88262575 ~ 88268140 (-)
LOC110523029 LOC106584023 coding downstream 256825 87685213 ~ 88049103 (-)
LOC110522895 NA coding downstream 646408 87657929 ~ 87659520 (-)
usp1 usp1 coding downstream 785878 87505749 ~ 87520050 (-)
angptl3 LOC106584028 coding downstream 881860 87419230 ~ 87424068 (-)
c5h1orf210 LOC106560518 coding upstream 245 88348333 ~ 88355068 (-)
orc1 orc1 coding upstream 53842 88401930 ~ 88412796 (-)
LOC110524758 LOC106560512 coding upstream 69329 88417417 ~ 88419175 (-)
LOC110522897 tspan1 coding upstream 92414 88440502 ~ 88469581 (-)
mast2 LOC106560530 coding upstream 803644 89140981 ~ 89465997 (-)
G452878 NA non-coding downstream 2902 88301398 ~ 88303026 (-)
G452875 NA non-coding downstream 5628 88299976 ~ 88300300 (-)
G452874 NA non-coding downstream 6256 88299200 ~ 88299672 (-)
G452852 NA non-coding downstream 52581 88252965 ~ 88253347 (-)
G452843 NA non-coding downstream 71006 88234644 ~ 88234922 (-)
G452979 NA non-coding upstream 223205 88571293 ~ 88571540 (-)
G452982 NA non-coding upstream 229457 88577545 ~ 88577825 (-)
G453000 NA non-coding upstream 250062 88598150 ~ 88598404 (-)
G453040 NA non-coding upstream 286196 88634284 ~ 88634582 (-)
G452575 NA other downstream 230923 88074594 ~ 88075005 (-)
G452517 NA other downstream 299341 88005919 ~ 88006587 (-)
G452504 NA other downstream 321295 87983960 ~ 87984633 (-)
G452457 NA other downstream 410716 87894732 ~ 87895212 (-)
G452442 NA other downstream 439464 87860127 ~ 87866464 (-)
G452999 NA other upstream 247363 88595451 ~ 88596395 (-)
G453823 NA other upstream 886137 89229699 ~ 89236608 (-)
G453915 NA other upstream 1093496 89441584 ~ 89442377 (-)
trmt1l trmt1l other upstream 1460947 89798954 ~ 89812313 (-)

Expression


Co-expression Network