LOC110522897 (tspan1)


Basic Information

Item Value
gene id LOC110522897
gene name tspan1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 88440502 ~ 88469581 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978692.1
GGGTGGGGGTGTGAGAGGTGCTGCTGAGGAGTTTTTTTCTCCCTTCACACAGGCCTAAGAAAGGACTAGTTCACCCATTTTGTGGAGAAAACACAATAtatgttgatttttttttaaggGGGTGCTGCAGCTACCCCCAGCACCTCTACTTCCTGAGGCGATGCCCACCAGCATAATGCTGTGAGGGACAAACATTCTACAGATCTTTTCAGATCCTCCTCCCGATGGACTATGAAGACCAGTGGAGTGCTTTTGCTTACTGGGACTAGACTACTTACGGAAGATAAATTCGTATTGAAATTCTTCATTATTTTCTGACCAACTGTCGAATCCGTTTTAACAGATCATCTATCTCCTTTCTCAACAATTTACCTGATCACCTGCTGATGCAAGCCCTAAATCAGGAGGAGCATGTCCAAATCCAAACCCGTGGACCAAGCCGAGCAGACCTTCGCTATGTGAACAATGGCCATCCTTGACTGGTTTGAAAAGAAAACCGCAAGTCAAAGAAAGGCGCCGGCATTCCTTTACCGAGGGAACATTGATCAACACTGGTGCTTGGAGACCGTACAAAGAGAGGACAGACCACCAGACTCTACCCTGCAGAACACTACTGCCCTCTACTGGTAGGAAGTGGTACTCTATTTTACATCCACGGGACAATGCTCATAGGAGAACAAAGGACCAGCCAAGCTCATCACTGAAGATAAGCAAAAGATCGTGCAGGAAATCAGCAACTTAACAACAATGATACTTCAAATTCATTTCAAGATCCTCTGCAGTACTGAAGAGAACCCTGGTCTGCCGGAGAACCCTCTCTCTGGAACCTAAAAGACACCACACTGGTAGCAGTCATCTTCTGAGTCTAACTCTTTAAGGCACACAGGCCATCTCTACAACGCAGATTAAAATGGCATGCTTCACATTCTTCAAATTCATGATGGTCTTGTTCAACTTGCTTATCCTTCTGGGGGGTCTGACCCTGCTGGGTGTGGGGATTTGGGTGCATGTGGATAAGGGTTTGTTCCTACAGGTGCTGAGTCCCTTCTCCACCCTCGACATGCAGTTTGTCAATGTGTGCTTCTTCTGCATCGCTATTGGAGGAGTGCTGGTTCTACTGGGTGTACTGGGCTGCTGTGGAGCCCACAAGGGGAGCAAGTGTCTGCTGCTACTGTTTTTCTCCATCATCCTGATTATTTTCATCGCTGAAGTGGCAGCCGGAACGGTGGCCCTCGCCTACTCTTCATTTGCCGAGGGGATTCTTAAAGCATGGGCCACACTTGTCTTGAAGAACCAGTATGGCAGCGATCCGGTGGTCACCAAGATCTGGAACAGCACCATGATCGAGCTGAACTGCTGTGGCTTCACCAACTACACAGACTTTACTGACTCCTACTACTCTGAGCAGAGTGAGGGCAGCTACCCACCCAGCTGTTGCCAGCTAGACACTGCCCCCTGCAGCCAGCAGCAGGCATGGCACAGTGCTGTTCAGGGCTGTTTCAAACAGCTGTTGAAGGCCCTTCAGAAGCATGCCAACATCGTAGGTGGAATAGCCGTAGGCATCGGAGGGCTAGAGGTGGCAGCGATGCTGGTATCCATGTACCTGTACTGCTATCTGGACAACAATGTCAGCTGAGACTTTGTATTGGACAGACAATATGTTGTTATGTACTGTGAAAGGTTAATACTAGTGATTGTAGTGCCATTATATCTGATAGGTTGCCTTGATGTTATTATCTACAAATGTATATCAGTTATCCATTATTTCACGTTTACTAATCAAGTGAGATATCTTTTTAATTAATAGCACACAAACGCCAAAACATAGTACTGTAATTGTGTGTAATGTTATTTTAGATGTTGTCACATTTATCTACTGTAAATACTTTACATTTACAATAAATTTCAGCTAC
>XM_036978693.1
GGGTGGGGGTGTGAGAGGTGCTGCTGAGGAGTTTTTTTCTCCCTTCACACAGGCCTAAGAAAGGACTAGTTCACCCATTTTGTGGAGAAAACACAATAtatgttgatttttttttaaggGGGTGCTGCAGCTACCCCCAGCACCTCTACTTCCTGAGGCGATGCCCACCAGCATAATGCTGTGAGGGACAAACATTCTACAGATCTTTTCAGATCCTCCTCCCGATGGACTATGAAGACCAGTGGAGTGCTTTTGCTTACTGGGACTAGACTACTTACGGAAGATAAATTCGTATTGAAATTCTTCATTATTTTCTGACCAACTGTCGAATCCGTTTTAACAGATCATCTATCTCCTTTCTCAACAATTTACCTGATCACCTGCTGATGCAAGCCCTAAATCAGGAGGAGCATGTCCAAATCCAAACCCGTGGACCAAGCCGAGCAGACCTTCGCTATGTGAACAATGGCCATCCTTGACTGGTTTGAAAAGAAAACCGCAAGTCAAAGAAAGGCGCCGGCATTCCTTTACCGAGGGAACATTGATCAACACTGGTGCTTGGAGACCGTACAAAGAGAGGACAGACCACCAGACTCTACCCTGCAGAACACTACTGCCCTCTACTGGTAGGAAGTGGTACTCTATTTTACATCCACGGGACAATGCTCATAGGAGAACAAAGGACCAGCCAAGCTCATCACTGAAGATAAGCAAAAGATCGTGCAGGAAATCAGCAACTTAACAACAATGATACTTCAAATTCATTTCAAGATCCTCTGCAGTACTGAAGAGAACCCTGGTCTGCCGGAGAACCCTCTCTCTGGAACCTAAAAGACACCACACTGGTAGCAGTCATCTTCTGAGTCTAACTCTTTAAGGCACACAGGCCATCTCTACAACGCAGATTAAAATGGCATGCTTCACATTCTTCAAATTCATGATGGTCTTGTTCAACTTGCTTATCCTTCTGGGGGGTCTGACCCTGCTGGGTGTGGGGATTTGGGTGCATGTGGATAAGGGTTTGTTCCTACAGGTGCTGAGTCCCTTCTCCACCCTCGACATGCAGTTTGTCAATGTGTGCTTCTTCTGCATCGCTATTGGAGGAGTGCTGGTTCTACTGGGTGTACTGGGCTGCTGTGGAGCCCACAAGGGGAGCAAGTGTCTGCTGCTACTGGCCGAGGGGATTCTTAAAGCATGGGCCACACTTGTCTTGAAGAACCAGTATGGCAGCGATCCGGTGGTCACCAAGATCTGGAACAGCACCATGATCGAGCTGAACTGCTGTGGCTTCACCAACTACACAGACTTTACTGACTCCTACTACTCTGAGCAGAGTGAGGGCAGCTACCCACCCAGCTGTTGCCAGCTAGACACTGCCCCCTGCAGCCAGCAGCAGGCATGGCACAGTGCTGTTCAGGGCTGTTTCAAACAGCTGTTGAAGGCCCTTCAGAAGCATGCCAACATCGTAGGTGGAATAGCCGTAGGCATCGGAGGGCTAGAGGTGGCAGCGATGCTGGTATCCATGTACCTGTACTGCTATCTGGACAACAATGTCAGCTGAGACTTTGTATTGGACAGACAATATGTTGTTATGTACTGTGAAAGGTTAATACTAGTGATTGTAGTGCCATTATATCTGATAGGTTGCCTTGATGTTATTATCTACAAATGTATATCAGTTATCCATTATTTCACGTTTACTAATCAAGTGAGATATCTTTTTAATTAATAGCACACAAACGCCAAAACATAGTACTGTAATTGTGTGTAATGTTATTTTAGATGTTGTCACATTTATCTACTGTAAATACTTTACATTTACAATAAATTTCAGCTAC

Function

symbol description
tspan1 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in posterior lateral line neuromast.

NR:

description
tetraspanin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978692.1 False 1913 mRNA 0.46 9 88440502 88469581
XM_036978693.1 True 1838 mRNA 0.46 8 88440502 88469581

Neighbor

gene id symbol gene type direction distance location
LOC110524758 LOC106560512 coding downstream 21327 88417417 ~ 88419175 (-)
orc1 orc1 coding downstream 27706 88401930 ~ 88412796 (-)
c5h1orf210 LOC106560518 coding downstream 85434 88348333 ~ 88355068 (-)
ap1m3 LOC106560519 coding downstream 92414 88305928 ~ 88348088 (-)
LOC110524751 LOC106560521 coding downstream 172362 88262575 ~ 88268140 (-)
mast2 LOC106560530 coding upstream 682151 89140981 ~ 89465997 (-)
pde4dip LOC106560533 coding upstream 996590 89466171 ~ 89608651 (-)
prrx1b LOC106560535 coding upstream 1159217 89628793 ~ 89639717 (-)
gorab gorab coding upstream 1175167 89644748 ~ 89649877 (-)
mettl11b mettl11b coding upstream 1225962 89695543 ~ 89713827 (-)
G452885 NA non-coding downstream 111229 88328321 ~ 88329273 (-)
G452878 NA non-coding downstream 137476 88301398 ~ 88303026 (-)
G452875 NA non-coding downstream 140202 88299976 ~ 88300300 (-)
G452874 NA non-coding downstream 140830 88299200 ~ 88299672 (-)
G452979 NA non-coding upstream 101712 88571293 ~ 88571540 (-)
G452982 NA non-coding upstream 107964 88577545 ~ 88577825 (-)
G453000 NA non-coding upstream 128569 88598150 ~ 88598404 (-)
G453040 NA non-coding upstream 164703 88634284 ~ 88634582 (-)
G453561 NA non-coding upstream 193892 88663473 ~ 88663756 (-)
G452575 NA other downstream 365497 88074594 ~ 88075005 (-)
G452517 NA other downstream 433915 88005919 ~ 88006587 (-)
G452504 NA other downstream 455869 87983960 ~ 87984633 (-)
G452457 NA other downstream 545290 87894732 ~ 87895212 (-)
G452442 NA other downstream 574038 87860127 ~ 87866464 (-)
G452999 NA other upstream 125870 88595451 ~ 88596395 (-)
G453823 NA other upstream 764644 89229699 ~ 89236608 (-)
G453915 NA other upstream 972003 89441584 ~ 89442377 (-)
trmt1l trmt1l other upstream 1339454 89798954 ~ 89812313 (-)

Expression


Co-expression Network