LOC118964683


Basic Information

Item Value
gene id LOC118964683
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 89648309 ~ 89669213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978726.1
gatagggttagtgttcccacatgGCCATACAGAGGGATGACAAGAggcctgtgctaattagctatcttctgcactctgaacacctgtgtgtaagcaTAATTTGAGAAGTGCGCAGAACTGTAGTTTCATTGCATGGAGGCACCCATAGCTGTAAGGATCTATGCaaaactgctacaCCATCCTCTGTGCGGGCCTTTGTACACACCAGTGAGCTGCTTGGACCACACCCAGGTCCAAGCAGGCTCTAGGCCCCAGCCTTCAGCCTCAGCCCCAGACCTCCAGCAAGCTGCAAGGCCTGGTCAGGGAGCCAAACCTCCAGACCCAGACGTCCAGCAAGCTGCAAGGCCTGGTCAGGGAGCCAAACCTCCAGACCCAGACCTCCAGCAAGCTGCAAGGCCTGGTCAGGGAGCCAAACCTCCAACCCCAGACCTCCAGCCAGCTGCAAGGCCTGGTCAGGGAGCCAAACCTCCAGCCCCAGACGTCCAGCTAGCTGCAAGGCCTGGTCAGGGAGCCAAACCTCCAGGCCCAGACGTCCAGCCAGCTGCAAGGCCTGGTCAGGGAGCCAAACCTCCAGGCCCAGACGTCCAGCCAGCTGCAAGGCCTGGTCAGGGAGCCAAACCTCCAGGCCCAGATGTCCAGCCAGCTGCAAGGCCTGGTCAGGGAGCCATACCCCCAGGTCCCAGCCCCAGACGTCCAGCAAGCTGCAAGGCCTGGTCAGGGAGCCAAACCTCCAGGCCCAGACGTCCAGCCAGCTGCAAGGCCTGGTCAGGGAGCCATAGCCCCAGGCCCCAGACGTCCAGCAAGCTGCAAGGCCTGGTCAGGGAGCCAAACCTCCAGGCCCAGACGTCCAGCCAGCTGCAAGGCCTGGTCAGGGAGCCAAACATCTAGGCCCCAGCCCCAGATGTCCAGCCAGCTGAAATGCCTGGTCAGGGAGCCAAACCTCCAGGCCCCAGCCCCAGAGCTGAGCAGAGAATCAGgttagaggtagagatggagggaatcCAGCCTGTCAGTTTGTGTTGAGATGATATTGGTAAACAATAAACATTGGGATgggactgatacacacacacagagggagagagagagagagagatggaaggagatgtgGAGATGTGTAGACAATAAGTTGATTATGGAGGAGACATGGAGTTGGCGAGACATGTTGTTGATATGGGGTGGTTGAATAGTTTTGACCCAGTACTGGACTTGACAAGAGTTACAGATGACTCACATAGTATGGAGCTCCCATACAGCCAACTGTCATGGTGATGACAACTGGTTAAATGGGCTGCCACAGGCTTCATCAAGTTTCCTACAGAACCTAGATTGGAATCAGAGAAGCACATGGACAGAGGAATAAACCCTCACACAACACTTCTCAAATACAAATGCACCAGTTGCCTCCTTCATGGCCCCATAATATGGACTCAAAATCAAATTCTTAATCAACTTATTTTTAACCATTGCACATTGCTATTGTTTTATTCATTACTGGTTTAATATATTTAACTGTGGGTCTGGCGGCTTCGCTGTCTCTCATCTCAGCCTTGTCCCAGAGTGGAGCTCACATCTGGTCGcaatcaggagagagagagagagagagagagaatgcatgcCCATTAGTAGTCCATGATTTGGCAGTAGTCTCCACGTACAGCGGtaccccatccatctctccactGGAGTTATGCAGAACATAGCCTCCTAGAAGGCCTTTACTCCAACCCATTCTTCCCACCCTTATTACCCGATTTAATTAGATTCTAAACGAGGGGAACAAAATGAACAGGAGTCATGGATTTGGGTTATTGGCAGCCTCGGGGATAAGGACACCCTGCTGAGAGCAGAGAATAGACATTTATGGGCTAAAAACGCCTAACGTCAGACACTACAGGGTTAATTGAATTAGAAAGGGCAATGGCTGGTGTTCTGTGGATATGAAGAACAAAATGAGTCATTATTCGAACTAAATCCCTGTTATAATCTCTCCCTAATTTACAGCTTTTAGCCTGGTAGGGCTTTTTTTGTTCTAAATAAACAATTACATGAAATGTATTTGATTATTTAAAATCCTTCTTGGAGACAGTCTGAGGTTTTAAAACAAGGCAAATGTGGGTTGAAATGAGAGGTCGTACACTTTGGGTGATTCCAAATGGATTAATAGAAAACATTCCTGTAAACAATCGTGTATAAAAGTTGGAAGGCAGGCAGTGATGTTGTTTGGTCTCAAGACATCTGTTGTCATTGGATACAGTTGTTATCTGGCTTCTAAACTAATCAGGAAAAGTTGCATTCTGGAATTTCTTCAATGAATGACTAAAAAGATGGAAAATTATAAGACCTTGGCGACTATAACTTTAGGGAGGATATAACCAGTAAATTACaaatgcatatactgtacacacacgcacacacgcacacgcacagagagagagagagagagagagagagagagagagaaatacaatcTTAATTAGATCCAGTCCTCGAGCACTGAGGTATTCCACTAAAAACCAAACTCCATGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978726.1 True 2530 mRNA 0.49 2 89648309 89669213

Neighbor

gene id symbol gene type direction distance location
LOC110524761 LOC106584012 coding upstream 668420 88655985 ~ 88979889 (+)
LOC110522898 NA coding upstream 1077124 88570295 ~ 88571185 (+)
LOC110522896 NA coding upstream 1215656 88425966 ~ 88432653 (+)
prpf38a pr38a coding upstream 1230461 88412848 ~ 88417848 (+)
LOC110524756 LOC106560515 coding upstream 1247970 88390467 ~ 88400339 (+)
kifap3a kifap3 coding downstream 51225 89720438 ~ 89763740 (+)
swt1 swt1 coding downstream 143813 89813026 ~ 89847246 (+)
hmcn1 LOC106560561 coding downstream 300846 89970059 ~ 90193583 (+)
ptgs2b ptgs2b coding downstream 596357 90265570 ~ 90272209 (+)
pdcb LOC106560557 coding downstream 643155 90312368 ~ 90326381 (+)
G453994 NA non-coding upstream 26659 89618031 ~ 89621650 (+)
G453992 NA non-coding upstream 33544 89614540 ~ 89614765 (+)
G453984 NA non-coding upstream 38798 89609283 ~ 89609511 (+)
G453555 NA non-coding upstream 39438 89608482 ~ 89608871 (+)
G453552 NA non-coding upstream 41388 89606633 ~ 89606921 (+)
G454051 mettl11b non-coding downstream 26349 89695562 ~ 89699223 (+)
G454077 NA non-coding downstream 102454 89771667 ~ 89772269 (+)
G454084 NA non-coding downstream 107933 89777146 ~ 89777883 (+)
G454085 NA non-coding downstream 110622 89779835 ~ 89780101 (+)
G453547 NA other upstream 47613 89599964 ~ 89600696 (+)
G453429 NA other upstream 261839 89385225 ~ 89386470 (+)
G452697 NA other upstream 1343860 88303307 ~ 88304449 (+)
G452673 NA other upstream 1424682 88223282 ~ 88223627 (+)
G452609 NA other upstream 1522442 88120399 ~ 88125867 (+)
G454751 NA other downstream 777482 90446695 ~ 90447956 (+)
G455168 NA other downstream 1119305 90788518 ~ 90790211 (+)
G455203 LOC106560548 other downstream 1324652 90993865 ~ 90994299 (+)
G455211 NA other downstream 1391877 91061090 ~ 91062621 (+)
G455469 NA other downstream 1818532 91487745 ~ 91489990 (+)

Expression


Co-expression Network