trmt1l (trmt1l)


Basic Information

Item Value
gene id trmt1l
gene name trmt1l
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 89798954 ~ 89812313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978732.1
TAAAATGGCGGAGCTCAAGGAAGCAGACGCCGAACAACTACACCAGGAGGACGTCGATATAAAAGGTGGTGGAGTCTCAGACACACTGGTCCCAGAAGAGAGACAGCCTGCTGAGGATGATGCATCTTCAGCCAGTAGTACTGTGGGGAAGACTGAGGCACTGGCAGGGGACAATGATGCCAAACCATCAACCACAATCAGCGATAGACACATCTCTATCCAGACCAAACTAGAGGGCCTGGAGGTGCTGACCGACCTAAACGGAGCTGGGAGGAAGGCGTGTCCACTATGCCCTGAGGAGAAGTTTAAGGCCTGCTACAGCCACAAGCTACGACGCCACCTCCAGAACCTCCACTGGAAGGTCTATGTGGAGTTTGAAGgtCAGAAGATGTGCATCTGTCACCTGCCCTGCAGACAGCTgaggcccagccccagccccaatgGAGACCAGGCTCCAGGCAGGCTGGTGGCACATTACCACTGTGTAGTGTGTTCAGTCACCATCGCCCGCAAGACGGACATGATCAGTCACCTGAAACGCCACGTCAACAAGGGAGAGACTGAGGCCAGCTACTCAGGCAGCTCTGATGTGCCCTTTGAGGAGTCAGCTCCGTCTGGACAGGCCTATGAGATAATGAAAGAGCTGGGGACCAATGTTCAGCTCATGCCCAACCATACGACCCCACAGAAGACTGACACCTACTTCAACCGCAAGATGAAGATCAACAGgcaGCTAGTATTCTGTTCCCTGGCGGTCCTGGCTGAGGAGAGGAACCCGTTGGAGAGTCTGGATGCGTTTGGAGCCACAGGCATTATGGGACTCCAGTGGGCCAAGCACCTGCGGAACGCCGTCAAGGTGACCATAACCGACATCAATGAAGTGTGTGTCAAGATGATCCGCGAGAACTGCAACCTCAACCACATCCGGGTGGAGGGGTCGCGGGGGTCATCCCGGGTCCCTGACGGGGGGGCGGGGGATGTGGACGGGGTGCCCATCGCTACCGTGGAGGTCGCCAAGATGGATGCCAACGTTATCATGCACCTGAGGTCTTTTGACTACATACACCTGGACCCGTTCGGCACGGCTGTCAATTATCTGGACTCTGCTTTCCGGAACATCCGGAACCTGGGCATCATCTCTGTGACGTCCACGGACACGGGCTCCCTCTACTCTAAGTCCCTGAACGTCACGATGCGCCACTATGGCTCGAATATAGTCCGCACAGAGTACTACAAGGAGCTGGCTGCACGCATGGTGCTGGTCACTGTAGCCAGGGCGGCGGCACGCTGTAATAAGGGCATAGAAGTGTTGCTGGCGGTGGCTGTGGAACACTTTGTCCTGGTGGTCGTCAGAGTCCTCAGGGGTCCCACCCAGGCCGATGAGTCAGCCAAGAGGATCAGACAGCTCATCCACTGCCAGTGGTGTGAGGAGAGGGTGTTCCTCAAACAGGGGAGCATGGTGGAGGAAAACCTGTACAGACAACTGCCCTGCAACTGTCATGGAAGCATGCCTGGCAAGACAGCGGTGGAGCTGGGACCGCTATGGTCTGGTCCTCTGTTTAACTCCGGGTTCCTGAGGAGGATGTTGTGTGCAGCGGTGCAGCACAGTATGGAGGATATTCAGCCTCTGGTCAAGACTCTGATCTGTGAGTCAGAGTGCACAACGCTCAAGTCCTCTGTTCACGGGCCCACTGCACTCATCAACCAAGTGGAATGTGGTGTAGTCATCAAGGTACAGAAGGTGGAGGAGTCAGGCACCGCTGACCACTCAGggaagagaaagacaggagatgAGCCAGGTAACGTGGTGAAGAAGCTGAAATCAGACGGGTCTCTGGAGCACCCAGCGTTCTACTACGGTATTCACCGCCACAGCATCAGAGGCATGAACATGCCCAAgttGAATAGGTTCCTGCAGTACTTGACGGAGGCGGGCTTCAGAGTGAGCCGCACCCACTTTGACCCAACAGGGGTGCGGACCGACGCCACGCTGGACCAGTTCAAGTCGGTGCTCACCAAATACAGCGTGCCCACCTACACCAACACCACGGCAACCCAAAACCCAGAGGAGACGGTACGGGCTATGGAGTGACCCACCCTGGGGAGAATCAAGGCCTCatcacctcttctctccctctcagagGTGACATATGtctcaaatgccaccctattccctatatagtacactaccttagaccagggcccataaccctattccctatatagtgcactactttagaccagggcccataaccctattccctatatagtgcactacttttgaccagggcccatagtagtacactataggtaatagggtggcattttctctgtgcagggacactggTTGTAAAGAGTGGCTCACTCTGCACTGATTTGTATTTTCCTCTTGGTTTCATTCATCACTGGTACTTTGTAAATGTTCTCTAAGAAGTCACAATGCTTCTAGATTAATAGAGTTCTGCTTTTCCAATAGAGCTGAAATATTGGTTAAATGCAGACAGATAATAGCCTCTATTCTGCTCATTTACTCATATTTATTATTCTTGTGAATAATTCCTTTACAATTTTATTTTCTGAGTTCATCGTAAAGTTCATGGTGGCCGTTTTCATCttttaatagttttttttatgtacATTTTTACTCTGGGTAAAAGGTAATAAAATATTGTTGCAAAGCCTGAA
>TU514429
CGGAGCTCAAGGAAGCAGACGCCGAACAACTACACCAGGAGGACGTCGATATAAAAGGTGGTGGAGTCTCAGACACACTGGTCCCAGAAGAGAGACAGCCTGCTGAGGATGATGCATCTTCAGCCAGTAGTACTGTGGGGAAGACTGAGGCACTGGCAGGGGACAATGATGCCAAACCATCAACCACAATCAGCGATAGACACATCTCTATCCAGACCAAACTAGAGGGCCTGGAGGTGCTGACCGACCTAAACGGAGCTGGGAGGAAGGCGTGTCCACTATGCCCTGAGGAGAAGTTTAAGGCCTGCTACAGCCACAAGCTACGACGCCACCTCCAGAACCTCCACTGGAAGGTCTATGTGGAGTTTGAAGgtCAGAAGATGTGCATCTGTCACCTGCCCTGCAGACAGCTgaggcccagccccagccccaatgGAGACCAGGCTCCAGGCAGGCTGGTGGCACATTACCACTGTGTAGTGTGTTCAGTCACCATCGCCCGCAAGACGGACATGATCAGTCACCTGAAACGCCACGTCAACAAGGGAGAGACTGAGGCCAGCTACTCAGGCAGCTCTGATGTGCCCTTTGAGGAGTCAGCTCCGTCTGGACAGGCCTATGAGATAATGAAAGAGCTGGGGACCAATGTTCAGCTCATGCCCAACCATACGACCCCACAGAAGACTGACACCTACTTCAACCGCAAGATGAAGATCAACAGgcaGCTAGTATTCTGTTCCCTGGCGGTCCTGGCTGAGGAGAGGAACCCGTTGGAGAGTCTGGATGCGTTTGGAGCCACAGGCATTATGGGACTCCAGTGGGCCAAGCACCTGCGGAACGCCGTCAAGGTGACCATAACCGACATCAATGAAGTGTGTGTCAAGATGATCCGCGAGAACTGCAACCTCAACCACATCCGGG

Function

symbol description
trmt1l Predicted to enable tRNA (guanine-N2-)-methyltransferase activity. Predicted to be involved in tRNA N2-guanine methylation. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be active in nucleus. Orthologous to human TRMT1L (tRNA methyltransferase 1 like).

NR:

description
PREDICTED: TRMT1-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978732.1 False 2685 mRNA 0.52 15 89798954 89812313
TU514429 True 921 TUCP 0.55 8 89809035 89812305

Neighbor

gene id symbol gene type direction distance location
niban1a fam129a coding downstream 7668 89763289 ~ 89791286 (-)
mettl11b mettl11b coding downstream 85127 89695543 ~ 89713827 (-)
gorab gorab coding downstream 149077 89644748 ~ 89649877 (-)
prrx1b LOC106560535 coding downstream 159237 89628793 ~ 89639717 (-)
pde4dip LOC106560533 coding downstream 190303 89466171 ~ 89608651 (-)
ivns1abpa ivns1abp coding upstream 41227 89853540 ~ 89918839 (-)
arpc5b LOC106560562 coding upstream 381353 90193666 ~ 90203568 (-)
pla2g4ab LOC106560559 coding upstream 398769 90211082 ~ 90272430 (-)
LOC110524783 LOC106560556 coding upstream 517515 90329828 ~ 90332933 (-)
LOC118936343 LOC106560556 coding upstream 520399 90332712 ~ 90335328 (-)
G454403 NA non-coding downstream 5622 89793085 ~ 89793332 (-)
G454402 NA non-coding downstream 6222 89792478 ~ 89792732 (-)
G454397 NA non-coding downstream 18891 89779776 ~ 89780063 (-)
G454367 NA non-coding downstream 82413 89716286 ~ 89716541 (-)
G454366 NA non-coding downstream 82975 89715619 ~ 89715979 (-)
G454434 NA non-coding upstream 34999 89847312 ~ 89847413 (-)
G454433 NA non-coding upstream 36447 89848760 ~ 89849005 (-)
G454438 NA non-coding upstream 39824 89852137 ~ 89852529 (-)
G454450 NA non-coding upstream 115766 89928079 ~ 89932987 (-)
G453915 NA other downstream 356577 89441584 ~ 89442377 (-)
G453823 NA other downstream 562346 89229699 ~ 89236608 (-)
mast2 LOC106560530 other downstream 644691 89140981 ~ 89465997 (-)
G452999 NA other downstream 1202559 88595451 ~ 88596395 (-)
G452575 NA other downstream 1723949 88074594 ~ 88075005 (-)
G454579 LOC106560561 other upstream 333512 90145825 ~ 90146313 (-)
G454875 NA other upstream 583534 90395847 ~ 90396236 (-)
G454900 NA other upstream 630783 90443096 ~ 90443490 (-)
G454882 NA other upstream 642368 90454681 ~ 90473614 (-)
LOC110524787 cfhr5 other upstream 1073759 90818787 ~ 90902401 (-)

Expression


Co-expression Network