pdcb (LOC106560557)


Basic Information

Item Value
gene id pdcb
gene name LOC106560557
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 90312368 ~ 90326381 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601449.2
ACCCCACTCTATTCACAGCATTAGACATCCCGGTTGTGTGACTGACCACAGTCCAGTGTGAAGGACGCTGACGACAACAGAGGAAGTGCTTCATTGTGACCGTAGGCTCACAGCTAACTCTCAAACATAATGTCTGGAAACGTCGATGAAGAGGAGGCCAACGTCACCCACACAGGCCCAAAGGGAGTGATCAATGACTGGAGGAGGTTTAAGCTTGAGAGCATGGACCAGGAGTCCCTGCCCCCCCAGAAGAGAGAGCTGCTCAGGCAGATGTCCTCCCCACACAGGCCCAAAGACGACGGCAGGGGAGGCCTCAACCGCAAGATGAGTGTTCAGGAGTATGAGCTGATTAAGGAGGATGACGAGAAGTGCATGAAGAAGTACCGCAAGCAGTGCATGCAGGAGATGCACGAGCGCCTCAGCTTCGGTCCCAAGTTCGAGGGCGTGTACGAGCTGGACAGCGGCGAGGCATTTCTGGAGGTCATTGAGAAGGAGCACCGGCTCACCGTGGTGGTAGTGCACATCTACAAGGAGGGGATCAAAGGTTGCGATGCGCTCAACTCCTGCCTGGACTGCCTGGCCACTGAGTACACTAGCGTCAAGTTTTGCAGGATCGACGCCGGGGTGACTGGTGCGGGGGAGCGCTTCACTGATGACGTCCTGCCCACCATGCTGGTGTATAAGGCTGGCGAGCTGCTGGGGAACTTCCTGGCCACCAACCAGCACTTCAACGAGGAGTTCTTCGCCACCGACGTGGAGGCTTTCCTCAACGGCTACGGCCTGCTGCCGGAGAAAGATTTAGTCgttgggggagaggaggaggaggcagccgTGGATGTGGAGGCAGTGGAGTGAATGGGTTGTGGAAGAGaggtgtgtggaggaggagatggaggacagGGGTTTATGGTGGGGAGGAGTGAAGAGGTTCTGGAAGAGaggtgtgtggaggaggagatggaggacagGGGTTTATGGTGGGGTGGAGTGAAGGGGTTGTGGAAGAGaggtgtgtggaggaggagatggaggacaaGGGGTTTATGGTGGGGTGGAGTGATAAAGGGTTGGTGGGGTTGAAGGAGGGAAGTGTGTGGAGGAGGATATGGTTTTGTGATGGATTGATGCTTGTTTTGTGTAACAGAGTAGCAGACGCACACAGACTGGGTTGACTGCACTAGAGGGGCCTGAGCGTACTGTAGAAGGAGTCCATTCCCTAAATAAGGGATCATTTCAATGTTCATCCAGGGAAGAAACGTCAGCAGCCTGATTACGGGTGGCCTGTGTACCTGATGTGGATTAGGGTTTGCATTCCTACTAGAAAAGGACCGTTCCAGTTAACTTATTGTTGGGAGCCAAAGTTGATCTATTATTAGGCTACATGTATGAAAGGGGGAAAACATGATATCACATATTGGGCCGATTCTGATTAGGATTACTCTGGGTCCAGGACACCAGCCTATGGTGTTTCTgggtaatatttaatatattatatatatgttatattttcAAGTCTTTAGAATGATATTTTTTTCAAGGTTAAATTACATATTTATTTTAGGTATTTACAAACGCTGTAAGATTCTATAATatttaataaaacaaaacatgaataacacgaaaaaaacaaacaaaaaaaaaacgtgtaATTCAATTGCTCATTAATGAATTTTGTAACATTGTTCGAACATTTGGAAAATGATCCATGTGTCAACTAAGACTAACTTGCCAACTGATTTTAGAAAATGCTACATAGCCAGTGCAGTAGTTCCACACACTTATCTGGAAAAGCCATTGACAAGCGGCCTGTTACATGAACCATTCAATCATCACCT

Function

NR:

description
phosducin

GO: NA

KEGG:

id description
K08327 PDC; phosducin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601449.2 True 1835 mRNA 0.49 4 90312368 90326381

Neighbor

gene id symbol gene type direction distance location
ptgs2b ptgs2b coding upstream 40159 90265570 ~ 90272209 (+)
hmcn1 LOC106560561 coding upstream 118785 89970059 ~ 90193583 (+)
swt1 swt1 coding upstream 465122 89813026 ~ 89847246 (+)
kifap3a kifap3 coding upstream 550019 89720438 ~ 89763740 (+)
LOC118964683 NA coding upstream 643155 89648309 ~ 89669213 (+)
cfh cfh coding downstream 429774 90756155 ~ 90779026 (+)
LOC110524788 LOC106560550 coding downstream 483162 90809543 ~ 90814365 (+)
LOC118964684 NA coding downstream 520603 90846984 ~ 90848592 (+)
LOC118964685 NA coding downstream 551950 90878331 ~ 90880383 (+)
LOC118964686 NA coding downstream 583977 90910358 ~ 90912406 (+)
G454649 NA non-coding upstream 13853 90297790 ~ 90298515 (+)
G454288 NA non-coding upstream 39924 90211143 ~ 90272444 (+)
G454322 NA non-coding upstream 41655 90270334 ~ 90270713 (+)
G454187 NA non-coding upstream 108835 90197737 ~ 90203533 (+)
G454186 NA non-coding upstream 115552 90193701 ~ 90196816 (+)
G454699 NA non-coding downstream 44291 90370672 ~ 90374596 (+)
G454698 NA non-coding downstream 48301 90374682 ~ 90378851 (+)
G454705 NA non-coding downstream 59788 90386169 ~ 90386387 (+)
G454709 NA non-coding downstream 67135 90393516 ~ 90393742 (+)
G454732 NA non-coding downstream 93394 90419775 ~ 90419990 (+)
G453547 NA other upstream 711672 89599964 ~ 89600696 (+)
G453429 NA other upstream 925898 89385225 ~ 89386470 (+)
G452697 NA other upstream 2007919 88303307 ~ 88304449 (+)
G452673 NA other upstream 2088741 88223282 ~ 88223627 (+)
G452609 NA other upstream 2186501 88120399 ~ 88125867 (+)
G454751 NA other downstream 120314 90446695 ~ 90447956 (+)
G455168 NA other downstream 462137 90788518 ~ 90790211 (+)
G455203 LOC106560548 other downstream 667484 90993865 ~ 90994299 (+)
G455211 NA other downstream 734709 91061090 ~ 91062621 (+)
G455469 NA other downstream 1161364 91487745 ~ 91489990 (+)

Expression


Co-expression Network