LOC110524788 (LOC106560550)


Basic Information

Item Value
gene id LOC110524788
gene name LOC106560550
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 90809543 ~ 90814365 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051890.1
ATTGAATTCTAGTATTTTGGGTCAGTCCCTCTGGACAGTGGTTCTCTTCAGTGCTCCCTGGGGGCTGGAACTCTGTAGACAAACATTAACTTTGGGGTAGACACTCTATATTTATGTTCTACTCCTTCCATTTTTACTGCATCTACCATTTGATCAACATGAAATCATCTCTGACTCTGCTGTGTCTGGTGGTATGGATGAATGTGGATGCTTCATCAGCTCAGACTGTGTGCAGTGGACCTCTTCCAAATGTGCCCAATGCCAGGGTCACTGAGGAAAGCATAAAAAATGAGTACAAAGAGGACGACATTGTCCTTTTTTCCTGCAACTTTGGCTTTGTGCCAGCAGGCAGAATAAGTTATCAGTGTAAGAAGAATAAGTGGGTGGTGGTCCGTCAGGGGAAATGCAAGCCTAAACCATGTGAGCTCCCTGATGAAACTGCCAATGGCCACTACAGCATCCACGTTGGAGATGACTTTGTCTTTGGAGCCACTATCAAATACACTTGCAATGACggTTATCAGATTGTGAGCAAAATGGACAACAGAACCTGTATGGTGGCAGGATGGAGCAACCACCTGCCCATATGTGAAGTGGTGAGTTGTGTCCCCGAGGCTACAGATGGACGGGTGGTTGTGAGCGGTCTGCCAGATGATGATGGTGTTATACAGTACGGTCATGAGCTCAAGTTCAGCTGCCCCAACCCAGCACACCAGCTGAAGGGAAACCCACAGGTAGTGTGTGCCGCAGGGGGGATGTGGAACAACCATTTCCCAACCTGTGAAGATGTGACTTGTGAAGCTGCAGAGAAGATTAAGAACGTGAACGTGATAGGAATTCCCCAAAACAACACCATGAAGGTTGGACACAGGCTACAGTTTGAGTGCAGCAACTCTAAACACGTTCTGAAGGGGAAATCAGAGGTCACCTGCTCAGCCAATGGACAGTGGAGTCACTCCATTCCAATTTGTTATgAGCCCAAGGATTTCTGTGGACCACCTCCACAGGTCAAtaacggagacagagacagaaccagaGAACGCTACAGAAATGGAGAATCAGTTCAATATGTCTGCCAGAAATTCTACATCCTTGATCCCCCTTCAGCGTACAAGACGTGTCGTGACGGGATCTGGACACGACCGATAACCTGTCTGAGTAAGTTCTCTCTAAAATAACATTGGCCCAGTTCCTACCCAATCGGATGCTAACTCCCCCTTAACGATCGAACCCTGCACTGTGGATGAAGAGCTGATGAACACACAGAACATCCAATTTAAATATCCTCCGGAAGATCAAAAAGTCTATGCCACACATGGGGATCATACCACTTTTAAGTGTACTGGTCATCTTAGACTTAGTCCAGGTAGTGTTGGTTTTCATCAGCAGTGTATAAATGGGGTCATGAACTTGCCTCATTGCCAATAGTGGCTTCGTCTTACGCGAAGAGATGGCCACTTGCTTGTTGGGCAAACATGTCAATGAATAACCCCTGTCAATAGTTTGCTCAAATTATTTTCAGATTCATTGTCTGAATAAATGTATGGTATTTCATGATTGTCCAACATGAAATAAAGTGCTGCTGGTTCAAATGTA
>XM_036978758.1
TTCTAGTATTTTGGGTCAGTCCCTCTGGACAGTGGTTCTCTTCAGTGCTCCCTGGGGGCTGGAACTCTGTAGACAAACATTAACTTTGGGGTAGACACTCTATATTTATGTTCTACTCCTTCCATTTTTACTGCATCTACCATTTGATCAACATGAAATCATCTCTGACTCTGCTGTGTCTGGTGGTATGGATGAATGTGGATGCTTCATCAGCTCAGACTGTGTGCAGTGGACCTCTTCCAAATGTGCCCAATGCCAGGGTCACTGAGGAAAGCATAAAAAATGAGTACAAAGAGGACGACATTGTCCTTTTTTCCTGCAACTTTGGCTTTGTGCCAGCAGGCAGAATAAGTTATCAGTGTAAGAAGAATAAGTGGGTGGTGGTCCGTCAGGGGAAATGCAAGCCTAAACCATGTGAGCTCCCTGATGAAACTGCCAATGGCCACTACAGCATCCACGTTGGAGATGACTTTGTCTTTGGAGCCACTATCAAATACACTTGCAATGACggTTATCAGATTGTGAGCAAAATGGACAACAGAACCTGTATGGTGGCAGGATGGAGCAACCACCTGCCCATATGTGAAGTGGTGAGTTGTGTCCCCGAGGCTACAGATGGACGGGTGGTTGTGAGCGGTCTGCCAGATGATGATGGTGTTATACAGTACGGTCATGAGCTCAAGTTCAGCTGCCCCAACCCAGCACACCAGCTGAAGGGAAACCCACAGGTAGTGTGTGCCGCAGGGGGGATGTGGAACAACCATTTCCCAACCTGTGAAGATGTGACTTGTGAAGCTGCAGAGAAGATTAAGAACGTGAACGTGATAGGAATTCCCCAAAACAACACCATGAAGGTTGGACACAGGCTACAGTTTGAGTGCAGCAACTCTAAACACGTTCTGAAGGGGAAATCAGAGGTCACCTGCTCAGCCAATGGACAGTGGAGTCACTCCATTCCAATTTGTTATgAGCCCAAGGATTTCTGTGGACCACCTCCACAGGTCAAtaacggagacagagacagaaccagaGAACGCTACAGAAATGGAGAATCAGTTCAATATGTCTGCCAGAAATTCTACATCCTTGATCCCCCTTCAGCGTACAAGACGTGTCGTGACGGGATCTGGACACGACCGATAACCTGTCTGAAACCCTGCACTGTGGATGAAGAGCTGATGAACACACAGAACATCCAATTTAAATATCCTCCGGAAGATCAAAAAGTCTATGCCACACATGGGGATCATACCACTTTTAAGTGTACTGGTCATCTTAGACTTAGTCCAGGTAGTGTTGGTTTTCATCAGCAGTGTATAAATGGGGTCATGAACTTGCCTCATTGCCAATAGTGGCTTCGTCTTACGCGAAGAGATGGCCACTTGCTTGTTGGGCAAACATGTCAATGAATAACCCCTGTCAATAGTTTGCTCAAATTATTTTCAGATTCATTGTCTGAATAAATGTATGGTATTTCATGATTGTCCAACATGAAATAAAGTGCTGCTGGTTCAAATGTA

Function

NR:

description
PREDICTED: complement factor H-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051890.1 False 1596 mRNA 0.46 8 90809543 90814365
XM_036978758.1 True 1520 mRNA 0.46 8 90809549 90814365

Neighbor

gene id symbol gene type direction distance location
cfh cfh coding upstream 30517 90756155 ~ 90779026 (+)
pdcb LOC106560557 coding upstream 483162 90312368 ~ 90326381 (+)
ptgs2b ptgs2b coding upstream 537334 90265570 ~ 90272209 (+)
hmcn1 LOC106560561 coding upstream 615960 89970059 ~ 90193583 (+)
swt1 swt1 coding upstream 962297 89813026 ~ 89847246 (+)
LOC118964684 NA coding downstream 32619 90846984 ~ 90848592 (+)
LOC118964685 NA coding downstream 63966 90878331 ~ 90880383 (+)
LOC118964686 NA coding downstream 95993 90910358 ~ 90912406 (+)
LOC110524786 LOC100136131 coding downstream 134017 90948382 ~ 90979079 (+)
LOC110523038 LOC106560551 coding downstream 190195 91004560 ~ 91072132 (+)
G455172 NA non-coding upstream 6491 90800456 ~ 90803052 (+)
G455158 NA non-coding upstream 50298 90754282 ~ 90759245 (+)
G455156 NA non-coding upstream 57921 90751415 ~ 90751622 (+)
G455133 NA non-coding upstream 58238 90719306 ~ 90751305 (+)
G455125 NA non-coding upstream 103791 90704122 ~ 90705752 (+)
G455173 NA non-coding downstream 12558 90826923 ~ 90828149 (+)
G455174 NA non-coding downstream 12823 90827188 ~ 90858751 (+)
G455176 NA non-coding downstream 14338 90828703 ~ 90829350 (+)
G455178 NA non-coding downstream 19315 90833680 ~ 90865252 (+)
G455181 NA non-coding downstream 39839 90854204 ~ 90893194 (+)
G455168 NA other upstream 19332 90788518 ~ 90790211 (+)
G454751 NA other upstream 361587 90446695 ~ 90447956 (+)
G453547 NA other upstream 1208847 89599964 ~ 89600696 (+)
G453429 NA other upstream 1423073 89385225 ~ 89386470 (+)
G452697 NA other upstream 2505094 88303307 ~ 88304449 (+)
G455203 LOC106560548 other downstream 179500 90993865 ~ 90994299 (+)
G455211 NA other downstream 246725 91061090 ~ 91062621 (+)
G455469 NA other downstream 673380 91487745 ~ 91489990 (+)
dda1 LOC106560571 other downstream 863740 91678060 ~ 91681757 (+)
G456139 LOC106560602 other downstream 1128789 91943154 ~ 92000758 (+)

Expression


Co-expression Network