LOC110524786 (LOC100136131)


Basic Information

Item Value
gene id LOC110524786
gene name LOC100136131
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 90948382 ~ 90979079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979080.1
TGCTCCCTGGGGGCTGGAACTCTGTAAACAAACATTAACTTTGGGATAGACACTCTATATTTGTCTTCTACTCCTTCCATTTTTACTGCATCTACCATTTGATCAACATGAAATCATCTCTGACTCTGCTGTGTCTGGTGGTATGGGTGAATGTGGATGCTTCATCAGCTCAGACTGAGTACTGTGGTAAGCCTGAGGGTGAAGGGAGGAGAATGCTGCCGATTCCTGATCAAGAACGTTATGAAAATGGGGACCAAGTTGAGTATGGATGTCTTGCAACTTGTAAGAACGGCGAGTGGGATAAGACCATCAAGGGCAAAGATTACTGTAGTAAACCTGAGGGTGCAGACACCAGAATGCTGCTGATTCCTGACCGAGAGAGATATGAAAATGGGGACAAAATAGATTATGGATGCCTTAGCGGCCCAAACAAAGGCTCAAGAGGAAAAGCAACTTGCAAGAACGGAGAGTGGAGTAAGACAATCGAGTGTCAAGCTCAGACTGAGCCCAAGGATTTCTGTGGACCACCTCCACATCTCATGAACGGAGACACAAACGGCGGTACCAGAGAACGCTACAGAAATGGAGAATCAGTTCAATATGTCTGCCAGAAATACTACATCCTTGATCCCCCTTCAGCGTACAAGACGTGTCATGACGGGATCTGGACACGACCGATAACCTGTCTGAAACCCTGCACTGTGGATGAAGAGCTGATGAACACACAGAACATCCAATTTAAATATCCTCCGGAAGATCAAACTAAAGTCTATGCCACACATGGGGATCTTATAACTTTTAAGTGTACTGGGCATAGTAGACTGAGCCCAGTTAGTGTTGATTTTCGTCAGCAGTGTATAAACGGGGTCATGAACTTGCCTTATTGCCAATATTGGCTGGCTAATATGGGGCTAAGGAGAGCCATGGCAGTACAGACATACTCCCAAGAACTTTGGGATAGACACTGTTTATTTATGTTCTACTCCTTCCATTTTTACTGCATCTACCATTTGATCAACATGAAATCATCTCTGACTCTACTCTGTCTGGTGGTATGGGTGAATGTGGATGCTTCATCAGCTCAGACTGTGTGCAGTGGACCTCTTCCAAATGTGCCCGATGCCAGGGTCACTGAGGAAAGCATCAAAAATGAGTACAAAGAGGACGACATTGTCCTTTTTTCCTGCAACTTTGGCTTTGTGCCAGCAGGCAGAATAAGTTATCAGTGTAAGAAGAATAAGTGGGTGGCGGTCCGTCAGGGGAAATGCAAGCCTAAACCATGTGAGCTCCCTGATGAAACTGCCAATGGCCACTACAGCATCCACGTTGGAAATGACTTTGTCTTTGGAGCCACTATCAAATACACTTGCAATGACGgTTATCAGATGGTGAGCAAAATGGACATCAGAACCTGTATGGTGGCAGGATGGAGCAACCACCTGCCCATATGTGAAGTGGTGAGTTGTGTCCCCGAGGCTACAGATGGACGGGTGGTTGTGAGCGGTCTGCCAGATGATGATGGTGTTATACAGTACGGTCATGAGCTCAAGTTCAGCTGCCCCAACCCAGCACACCATCTGAAGGGAAACCCACAGGTAGTGTGTGCCGCGGGGGGGATGTGGAACAACCATTTCCCAACCTGTGAAGATGTAACTTGTGAAGCTGCAGAGAAGATTAAGAATGTGAACGTGATAGGAATTCCCCAAAACAACAATACCATGAAGTATGGACACAGGCTACAGTTTGAGTGCAGCAACTCTAAACACGTTCTGAAGGGGGAATCAGAGGTCGTCTGCTCAACCAATGGACAGTGGAGTCACTCCTTTCCAATTTGTGAAgAGCCCAAGGATTTCTGTGGACCACCTCCACATCTCATGAACGGAGACACAAAGGGCGGTAGAGAAAGTTACAGAAGCGGAGAATCAGTTCAATATATGTGCCAGAAATACTACATCCTTGAACCCCCTTCAGCGTACAAGACGTGTCATGACGGGATCTGGACACGACCGATAACCTGTCTGAAACCCTGCACTGTGGACGAAGAGCTGATGAACACACAGAACATCCAATTTAAATATCCTCCGGAAGATCAAAATAAACTCTATGCCACACATGGGGATCATATCACTTTTAAGTGTACTGGTCATAGTAGAATGAGCCCAGTTAGTGTTGATTTTCGCCAGCAGTGTATAAACGGGGTCATGAACTTGCCTTATTGCCAATAGTGGCTTCAGCTTACGGGAAGAGAAGGGCAAAGGCTTGTTGGACAAACATGTCAATGAATAACCTGTCAATAGTTTGCTCAAATCATTTGTTCTGGGGCTTTGCATAAACTAAGGAACATTGACTTCACAGGAGTTGTTTTTCATGTCAGTCCGAACTTCAATAAAGTACCTCTGGTTTTGAATTCTCAA

Function

NR:

description
complement factor H-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979080.1 True 2414 mRNA 0.46 15 90948382 90979079

Neighbor

gene id symbol gene type direction distance location
LOC118964686 NA coding upstream 35976 90910358 ~ 90912406 (+)
LOC118964685 NA coding upstream 67999 90878331 ~ 90880383 (+)
LOC118964684 NA coding upstream 99790 90846984 ~ 90848592 (+)
LOC110524788 LOC106560550 coding upstream 134017 90809543 ~ 90814365 (+)
cfh cfh coding upstream 169356 90756155 ~ 90779026 (+)
LOC110523038 LOC106560551 coding downstream 25481 91004560 ~ 91072132 (+)
LOC118964687 NA coding downstream 93727 91072806 ~ 91075802 (+)
LOC118964734 NA coding downstream 305159 91284238 ~ 91285565 (+)
LOC110524795 LOC106560563 coding downstream 359768 91338847 ~ 91561585 (+)
LOC110524798 NA coding downstream 602892 91581971 ~ 91616915 (+)
G455182 NA non-coding upstream 35763 90882312 ~ 90912619 (+)
G455181 NA non-coding upstream 55188 90854204 ~ 90893194 (+)
G455178 NA non-coding upstream 83130 90833680 ~ 90865252 (+)
G455174 NA non-coding upstream 89631 90827188 ~ 90858751 (+)
G455176 NA non-coding upstream 119032 90828703 ~ 90829350 (+)
G455196 NA non-coding downstream 1011 90980090 ~ 90980414 (+)
G455197 NA non-coding downstream 2175 90981254 ~ 90981462 (+)
G455199 NA non-coding downstream 6001 90985080 ~ 90985969 (+)
G455200 NA non-coding downstream 7346 90986425 ~ 90986644 (+)
G455202 NA non-coding downstream 13235 90992314 ~ 90993164 (+)
G455168 NA other upstream 158171 90788518 ~ 90790211 (+)
G454751 NA other upstream 500426 90446695 ~ 90447956 (+)
G453547 NA other upstream 1347686 89599964 ~ 89600696 (+)
G453429 NA other upstream 1561912 89385225 ~ 89386470 (+)
G452697 NA other upstream 2643933 88303307 ~ 88304449 (+)
G455203 LOC106560548 other downstream 14786 90993865 ~ 90994299 (+)
G455211 NA other downstream 82011 91061090 ~ 91062621 (+)
G455469 NA other downstream 508666 91487745 ~ 91489990 (+)
dda1 LOC106560571 other downstream 699026 91678060 ~ 91681757 (+)
G456139 LOC106560602 other downstream 964075 91943154 ~ 92000758 (+)

Expression


Co-expression Network