LOC118964687


Basic Information

Item Value
gene id LOC118964687
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 91072806 ~ 91075802 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978761.1
TTAAAGACAATGTTGGCCCGTTCGTGGTGCATTCTTGGTAAACGCTgcgtatgtcggctcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaatgacctttacatggCGCATAGCCGACAAAGggcaatcggaaatgacctttacatggCGCATAGCCGACAAAGggcaatcggaaatgacctttacatggCGCATAGGCGACAAAGagcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaatgacctttacatggCGCATAGCCGACAAAGagcaatcggaaatgacctttagATGGCGTATAACCGACAAAGagcaatcggaaatgacctttacatggCGCATAGCCGACAAAGagcaatcggaaattacctttacatggcGCATAACCGACAAAGagcaatcggaaatgacctttagATGGCGCATAGCCGACAAAGagcaatcggaaatgacctttacatggCGCAAAGCCGACAAAGagcaatcggaaatgacctttacatggCGCATAGCCGACAAAGagcaatcggaaatgacctttagATGGCGCAAAGCCGACAAAGagcaatcggaaattacctttagaTGGGGCATAGCCGACAAAGagcaatcggaaatgacctttacatggCGCATAGCCGACAAAGagcaatcggaaatgacctttacatggCGCATAGCCGACAAAGagcaatcggaaatgacctttagATGGCGCATAGCCGACAAAGagcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaattacctttacatggcGCATAACCGACAAAGagcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaattacctttacatggcGCAAAGCCGACAAAGagcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaatgacctttagATGGCGCAAAGCCGACAAAGagcaatcggaaattacctttagaTGGCGCATAGCCGACAAAGagcaatcggaaatgacctttacatggCGCATAGCCGACAAAGagcaatcggaaatgacctttacatggCGCATAGCCGACAAAGagcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaatgacctttagATGGCGCAAAGCCGACAAAGagcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaattacctttacatggcGCATAGCCGACAAAGagcaatcggaaattacctttagaTGGCGCATAGCCGACAAAGagcaatcggaaatgacctttacatggCGCATAGCCGACAAAGagcaatcggaaatgacctttacatggCGCATAGCCGACAAAGagcaatcggaaatgacctttacatggCGCATAGCCGACAAAGagcaatcggaaatgacctttacatggCGCATAGCCGACAAAGagcaatcggaaatgacctttagATGGCGCAAAGCCGACAAAGagcaatcggaaatgacctttagATGGCGCATAGCCGACAAAGagcaatcggaaatgacctttagATGGCGCAAAGCGCAATCGGATTGAATCCCGGACAAAGTTTCAAAAGATGTTGTTTGTATATATTGTCACATTACTTTTTGTATCTATACAGCTTTCCATTATGTTCCATTgattgtgtatatactgtatgaagACAGATCCAGTTGTGTATATGAACTTTGATGATTTGTGTGGTAATTTATTCTTTCTTCCATTGGGAACCTGGTGACTAGCTGAAGAAGTCGGGGAatctcaggggggggggggggggggttagcagTGTGTATATTATCTCTGTTATGGAAAAGACTCTGGAGAGTCAGACAGCCGGTGAACCATTTGTTCGTCACGTCTGAAGCGAGGCGAAGCCTTCATCCTCAGTGTTTTTAGCCCACAGCCTCAAAAGTACCTCCAAgttaccagaacatcatcagtaACGTGAAAATGTAGAGTTTGGTTTTTAAGGTCCTCAACATTACTGATTTTTGTTGATAACCAATTCGTGATCAATTTGTACTTCTGCAGTCAACTGTATTGTATATCATATGTTCATATTGCTGTATGTCCAAAGGTCTGTCttacaacaaaacaaacattccatTGTCAATTATGTCTAATAAAGTGTAATCAGATGTCCATTAGAGTCTAATGAGTGTATGAGGGAGGCGGGACTACAGTTGGTTTTGAATGTGACTGCATTCCACCCGGTTGGGTATCTCCTATATGGCAATAAAGACCCCATTTAGATCTTTATGTAACTCACTCTCTTATAATCAGTTATAATAACGACACTCATTTCACTGGTAGGTTTCAATTCAATAAATCTTTGTCCATGAAA
>TU515355
TAGCCGACAAAGagcaatcggaaatgacctttagATGGCGCAAAGCCGACAAAGagcaatcggaaatgacctttagATGGCGCATAGCCGACAAAGagcaatcggaaatgacctttagATGGCGCAAAGCGCAATCGGATTGAATCCCGGACAAAGTTTCAAAAGATGTTGTTTGTATATATTGTCACATTACTTTTTGTATCTATACAGCTTTCCATTATGTTCCATTgattgtgtatatactgtatgaagACAGATCCAGTTGTGTATATGAACTTTGATGATTTGTGTGGTAATTTATTCTTTCTTCCATTGGGAACCTGGTGACTAGCTGAAGAAGTCGGGGAatctcaggggggggggggggggggttagcagTGTGTATATTATCTCTGTTATGGAAAAGACTCTGGAGAGTCAGACAGCCGGTGAACCATTTGTTCGTCACGTCTGAAGCGAGGCGAAGCCTTCATCCTCAGTGTTTTTAGCCCACAGCCTCAAAAGTACCTCCAAgttaccagaacatcatcagtaACGTGAAAATGTAGAGTTTGGTTTTTAAGGTCCTCAACATTACTGATTTTTGTTGATAACCAATTCGTGATCAATTTGTACTTCTGCAGTCAACTGTATTGTATATCATATGTTCATATTGCTGTATGTCCAAAGGTCTGTCttacaacaaaacaaacattccatTGTCAATTATGTCTAATAAAGTGTAATCAGATGTCCATTAGAGTCTAATGAGTGTATGAGGGAGGCGGGACTACAGTTGGTTTTGAATGTGACTGCATTCCACCCGGTTGGGTATCTCCTATATGGCAATAAAGACCCCATTTAGATCTTTATGTAACTCACTCTCTTATAATCAGTTATAATAACGACACTCATTTCACTGGTAGGTTTCAATTCAATAAATCTTTGT
>TU515356
GAAAAGACTCTGGAGAGTCAGACAGCCGGTGAACCATTTGTTCGTCACGTCTGAAGCGAGGCGAAGCCTTCATCCTCAGTGTTTTTAGCCCACAGCCTCAAAAGTACCTCCAAgttaccagaacatcatcagtaACGTGAAAATGTAGAGTTTGGTTTTTAAGGTCCTCAACATTACTGATTTTTGTTGATAACCAATTCGTGATCAATTTGTACTTCTGCAGTCAACTGTATTGTATATCATATGTTCATATTGCTGTATGTCCAAAGGTCTGTCttacaacaaaacaaacattccatTGTCAATTATGTCTAATAAAGTGTAATCAGATGTCCATTAGAGTCTAATGAGTGTATGAGGGAGGCGGGACTACAGTTGGTTTTGAATGTGACTGCATTCCACCCGGTTGGGTATCTCCTATATGGCAATAAAGACCCCATTTAGATCTTTATGTAACTCACTCTCTTATAATCAGTTATAATAACGACACTCATTTCACTGGTAGGTTTCAATTCAATAAATCTTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978761.1 False 2955 mRNA 0.44 2 91072806 91075802
TU515355 False 928 lncRNA 0.40 1 91074867 91075794
TU515356 True 528 lncRNA 0.38 1 91075267 91075794

Neighbor

gene id symbol gene type direction distance location
LOC110523038 LOC106560551 coding upstream 674 91004560 ~ 91072132 (+)
LOC110524786 LOC100136131 coding upstream 93727 90948382 ~ 90979079 (+)
LOC118964686 NA coding upstream 160400 90910358 ~ 90912406 (+)
LOC118964685 NA coding upstream 192423 90878331 ~ 90880383 (+)
LOC118964684 NA coding upstream 224214 90846984 ~ 90848592 (+)
LOC118964734 NA coding downstream 208436 91284238 ~ 91285565 (+)
LOC110524795 LOC106560563 coding downstream 263045 91338847 ~ 91561585 (+)
LOC110524798 NA coding downstream 506169 91581971 ~ 91616915 (+)
ptprc ptprc coding downstream 557383 91633185 ~ 91660217 (+)
dda1 LOC106560571 coding downstream 602258 91678060 ~ 91681757 (+)
G455249 NA non-coding upstream 4701 91067022 ~ 91068105 (+)
G455231 NA non-coding upstream 36823 91035713 ~ 91035983 (+)
G455230 NA non-coding upstream 37903 91033832 ~ 91034903 (+)
G455204 NA non-coding upstream 76885 90994315 ~ 90995921 (+)
G455202 NA non-coding upstream 79642 90992314 ~ 90993164 (+)
G455260 NA non-coding downstream 17290 91093092 ~ 91093351 (+)
G455273 NA non-coding downstream 36196 91111998 ~ 91112231 (+)
G455274 NA non-coding downstream 39378 91115180 ~ 91115396 (+)
G455308 NA non-coding downstream 123957 91199759 ~ 91201772 (+)
G455348 NA non-coding downstream 193738 91269540 ~ 91270882 (+)
G455211 NA other upstream 10185 91061090 ~ 91062621 (+)
G455203 LOC106560548 other upstream 78507 90993865 ~ 90994299 (+)
G455168 NA other upstream 282595 90788518 ~ 90790211 (+)
G454751 NA other upstream 624850 90446695 ~ 90447956 (+)
G453547 NA other upstream 1472110 89599964 ~ 89600696 (+)
G455469 NA other downstream 411943 91487745 ~ 91489990 (+)
G456139 LOC106560602 other downstream 867352 91943154 ~ 92000758 (+)
G456731 cp other downstream 1926201 93002003 ~ 93041462 (+)
LOC110524836 rpl36 other downstream 2146104 93221830 ~ 93225091 (+)

Expression


Co-expression Network