LOC118964688


Basic Information

Item Value
gene id LOC118964688
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 91105800 ~ 91109094 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051894.1
CACTAACATAGCCTAGATTACAGCGGGTGTCACTCCTGAACACTaacattcgcacacacacacacacacagtgactgcCTGTCCTTAATCTATTATGGTCAGTCCAGCGCAGAGGGAGCACAGTAAAGTACAAGCAGCCCGCAGCGAGCAGAGCCAAAATAAAAAGCCAAATACCTCTAAAACGGTGAGGGGTTTTAACAGGCACAAAGGCACGCACGGCCGGGTGCAGCAGCAATGCCAGGATTTATAGAACGCTGGGGCAGTAAACGGGACTCGGAAGCATCAGCGGAGCCTTCCGGAACGGGTGTTTTTACAAACTGTAACTATTGGAAACAAATGCTGTGTTAAAGAGGTTGAAAAGAAACATGATCCACAGAGTCTCCACCCCCCAACACAGCTGGTTTCACTTCCTGGGGGAGACTTTACTCACGCCACCCCCACTTCCTGTTGATCAGTCAGGAGAGAGGCTGTAAATCTTCGATGAGGACATCATTGATGTTTGGGATGTGGTTTTCTGTTTGGCTTTTGATGGAGGTAACTTCAGCAATACGGATTGAATCAAGCCCCTTACTGTAATAGGCTTTTTGACAAATCAGGATAAAATGgtctggtgggtcctgtggcgATGGTTATTACCATCAGGCAGTTTTACAGCCTTCTAAGCCTCACATATTTCAGCCTGTACGCCAGACTTCCTAAAGGATCTCCTTCACTGTCACATGTGTCTGGGTCTAGTAAAATAAGCACTCAGCTCGTAAACCGGCCAATGAGCAGACCCCAAATAGCCACTTCTGCCAGCCTGACTGACAGAAGCCCTAAAGAGACGTGTTCAAAGATGGAGGGAAGCTAGTCACATGGAGATTGAGGAGGCAGTCAATCAAAGAGAATGGCTACATCTACCAGAAACATTGACTGCAATGTGCTTCTGTTGTCTTCTTGTCCTCCTCTGAGGAAACAacagctttttgttgttgttgtcagccTCATGTTGAAGTTTATTTTCTCTGACTATATTTCTAAAAGGCACAACAAACCTGCTGCGTTCTCCGACTACCTACTTTCCTACTTTAGTACCCCATCtcccagcgtgtgtgtgtgtgtgcgcgtgtgtgtgtgtgtgtgtgtgtgcgcgcacacccTGTCTCCTGCGGTCTGCGTGCTGTAACGCTGTTCTGGTCTCCAGTAAATCCAAACCACTACCAGGTGTACACACAGAGCCTAGGCTGAGCTGAGCATACGGCCACagctgctctgtctgtgtgtagttctgtgtttgtgtatgcatgtgtgagtAGAATGAAGTTGTCATTAGCCGCTGATCTAAAGTCAGATTTTTACATTTTTCACCCTGATGCTAAAAAAacgtaagctgatcctagatctgtacttaAGGGGCAACCCGTAGTGATTTATAGAGCTGCCACCGCATCATAGACATTCTTGTGTAGAGCCGTGCCCCGGTACAGCGGACCAGAGCTCTGTGTGCCAAACGACGCTACGTTCCCAGCTTCCTCTATTCCCACGCTTTCCTCTGTACTGCCAACTGGGAACATACATACCTCCCCGTTCACATCATTATGAGAATAAtagtccaactctctctctctctcatgatttCTTGATGTGCAGTAGGCCTACTTAATGTAAAACGTGTGGTGTACTGTTACTATATGTTAGTTAAAGAAAGTATACTCTCGTTACATTGTCCGTCCATCATTTGGGTTAGCCAGTCGGGTTAACAACTGTTATGAGAATATAAGATGGTGAATACAGTAGGTAAGAGGTACGAGGTAGGGAGTTCTACTCTCCTGTCCTTGACCGTTATCAGAGCTGAAGGGATATCAAAGCACACATTCTTCAGCAGAGAGACTGAAAACACTTTGAGACACTTTGAAACACTCCTGTCCAAAAGGCTCAGAGCAAGCTATACCTCCAGGTGTTTGTGTCTGACAGGAGGGGAGAGCGCAGGGCAGCAGGACACTCTGTTTTCCAGATAACACCTTGTTTACCAGAGTAAATGGCAGTCAGAGgggggtagagactagagagcctGGTTGAGACACACGACACAGCTGACCGTCAGAGgggggtagagactagagagcctGGTTGAGACACACGACACAGCTGACAGTCAGAGgggggtagagactagagagcctGGTTGAGACACACGACACAGCTAACAGTCAGAGgggggtagagactagagagcctGGTTAAGACACACGATACAGCTAACAGTCAGAGgggggtagagactagagagcctggttgagacacagacacagctaaCAGTCAGAGAGGGGTAGAGACTTGAGAGCCTGGTTGAGACACACGACACAGCTAACAGTCAGAGGGGGCTAGAGACTACAGAGCCTGGTTGAGACACACGACACAGCTAACAGTCAGAGaggggtagagactagagagcctGTTTGAGACACACGACACAGCTGACAGTCAGAGGGGTGTAGAGACTACAGAGCCTGGTTGAGACACACGACACAGCTGACAGTCAGAGaggggtagagactagagagcctGGTTGAGAGACACGACACAGCTGACAGTCAGAGaggggtagagactagagagcctGGTTGAGACACATGACACAGCTAACAGTCAGAGaggggtagagactagagagcctGGTTGAGACACACAACACAGCTAGCAGAGACAGATCTGTACCTGGTCACATTATAATGCCATAACAGGTGATACACAACtgctagtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagacagagagatgtttGCTGCTGAAAGGTTTCACTTATCAGCAACGTCAACCTATACTTCATGGAAAACCTTCTAGTTTGAAGTTAAGACAAGGGCAACGTGAAAGACAGAGTCTGGGGCACTATGGCTGCGTTTCGACAGGCagcccaaattttttttttttcattaattggtcttttgaccaatcaggtcAAATGATCTGATTGTCTGAACAGCCAATGTCTACTCAACGTTGTGTATGATGTAGTTTACATGAAGACAGTTGTGAGAAGTTGTTTTGACACAACATAATTAATATGCAATGTTAACTTTTACATTTTACTGCACATTTTTAATGTTTTGTTCTATGCTGAGGAAAATGTGCTGTGTGAAATTAGTATAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051894.1 True 3210 mRNA 0.47 2 91105800 91109094

Neighbor

gene id symbol gene type direction distance location
aspm LOC106560548 coding downstream 102168 90979189 ~ 91003632 (-)
LOC110524789 NA coding downstream 173539 90912429 ~ 90932261 (-)
LOC110524787 cfhr5 coding downstream 203405 90818787 ~ 90902401 (-)
b3galt2 LOC106560555 coding downstream 721706 90364241 ~ 90384094 (-)
LOC118936343 LOC106560556 coding downstream 770472 90332712 ~ 90335328 (-)
LOC110524793 nek7 coding upstream 22514 91131608 ~ 91291859 (-)
lhx9 LOC106560546 coding upstream 193450 91302544 ~ 91315662 (-)
abhd8b abhd8 coding upstream 551733 91660827 ~ 91677939 (-)
ano8b LOC106560570 coding upstream 572751 91681845 ~ 91772451 (-)
plvapb plvap coding upstream 715511 91824605 ~ 91828072 (-)
G455651 NA non-coding downstream 4889 91100712 ~ 91100911 (-)
G455646 NA non-coding downstream 15554 91089866 ~ 91090246 (-)
G455645 NA non-coding downstream 17001 91088594 ~ 91088799 (-)
G455644 NA non-coding downstream 18575 91087001 ~ 91087225 (-)
G455639 NA non-coding downstream 32770 91071712 ~ 91073030 (-)
G455661 NA non-coding upstream 2743 91111837 ~ 91112128 (-)
G455662 NA non-coding upstream 3305 91112399 ~ 91112793 (-)
G455685 NA non-coding upstream 80016 91189110 ~ 91189554 (-)
G455711 NA non-coding upstream 133403 91242497 ~ 91248997 (-)
G455718 NA non-coding upstream 172969 91282063 ~ 91282769 (-)
G455649 NA other downstream 9465 91094709 ~ 91096335 (-)
G455600 NA other downstream 31037 91073996 ~ 91074763 (-)
G455630 NA other downstream 44815 91057457 ~ 91060985 (-)
G454882 NA other downstream 632186 90454681 ~ 90473614 (-)
G455713 NA other upstream 148013 91257107 ~ 91258984 (-)
G456288 LOC106560576 other upstream 787542 91896636 ~ 91914788 (-)
G457385 NA other upstream 1402825 92511919 ~ 92514384 (-)
G457422 NA other upstream 1462885 92571979 ~ 92573894 (-)
G457423 NA other upstream 1465289 92574263 ~ 92574754 (-)

Expression


Co-expression Network