babam1 (babam1)


Basic Information

Item Value
gene id babam1
gene name babam1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 91832381 ~ 91849143 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978784.1
AACCTCAATTCCCCGCTGCCGGAATTCCTGATTGACATTCTTCCGGTCAGGAAGATGGCCGTACACAACAAATAGTTTGCGAAATATGAACTATATTTCATTCGTTTTCTTCGTTTTATAGAAGTCTAACCTAGGTATTTCCTGGAAAAAAAATCAACCAGTATCCATGGAGACCCCACAGCCCGGCCCAGCAGACGGAGAGGAGCGATCAGTGGAGCTGCGGCCCAGAACACGCTCAAACCCGGAGGGTGCAGAGGACAGGCGCAGTAGCACTGGTAGCCTAGGCAACAGCAACCCCAGCACCCCGCAGCCCGCAGTGGGAAGccgagtggagggagagggggaggcctCGACCAGCGACAGTCCTCCtagctccaccaccaccacagtctCTGCCACCACAGCCCAGACCGTAGCCCCTATAGTGGCAGCTACGGTCAATGCCATAGTAGGCCTGCCCACCCCCACGCCAGTGGCCAAGGACAGGCCCAAACCCACCCAGGCTCCTCCCCCTCTGACGCCCCCCATCCCTCCCACAGCAGAGTTCCAGCTACGAGCACCCCGCGTCAACTGTCCAGAGAAAGTGATCATCTGTTTGGATCTCTCTGAAGAGATGTCATCACAAAAACTGGAGTCCTTCAATGGATCCAAGACCAACGCTCTCAATATTTCCCAGAAGATGATTGAGATGTTTGTGAGAACAAAACACAAGATTGACAAGCGCCATGAGTTTGCCCTGGTGGTTGTTAATGATGATGCCTTGTGGctgtCAGGTTTCACCTCTGACCCCAGGGAGCTGTGCAGCTGTCTCTATGACCTGGACACCAACGTGTGTGAAACCTTCAATCTAGAGGATCTTCTTAGTGTTATCCGTCAGAAGATAGATCTTCCTCTCATGGACAACATCCAGACCATCCCCCCTCCGTTTGTAGTCAGGACTCTCCTCATCTACAGTAGACACGCTGGACAGCTGCAGTTCAGCCCCTCAGACGCTGTCAATAGCATGCTGCTGTCTCCCTACTTCTTCTTTGATGTGGTTTACCTTCACAACGGGGCTGAGGAGCAGGGGGATGAGGCCAGCTGGAGGGACATCTACACATCGTTCTGTAACCTGGACTCTAAAGGCACCTGTTACCACTTCGAGGTATCTCTGTGTGGGCCGGCCATCGAGctccacaactgcatggccaagctGCTGTCCCACCCCCTCCAGAGACCCTTCCAGAGCCATGCCTCCTACAGCCTGATAGAGGGAGATGACCCCCAGGACGTAGAGGCCACCGTCTAACTGGAGGTGCCTGGTAGAGCGACGGACCCCCAGGGGAGGCCAGTGTTTAACTTGGGGGTCTTCAGAgtaccctggtcctggagagttaCAGGGTCTGCAGGCTTTTGCTATTTTGACACTGAATCAAGAGGTGTGTTAGTAGTGCAGGGTTGGAGCAAAAGCCTGCCGAGTCAAGTGTGTTAGTGCCCGGCGCTGGACTAAGCGTTTGCACACGCTGTAGCTCTCCAGAACCAGGCTTGGAGAACACTGCTCTAACTGGACAAAGAGATGGGTTGCTAGGAGATGGGTTGCTAGGAGATAACAATGGGGAAATTAAGAagcatgtgtgtatgtattcCATTTTGTTTTAAACCTGATCTGGGGACAGTGTTTTCCCTACAAGTCTTAAAGAGTGAAATCCATGGTGGCACTTCTAGGCCTACACAATAGATGTCACCCATTTCCATGGCTGGCTTGTGGAAAACCTACATTGAAATAACTAAATATAGCTATATACACTGTCAGGAGCAAGGTTGTTGTCATGGGCTGTTTGGGAAAGGTTGTAAACTGATTCGTTTTCTTGTTTTTCCATCCGTACACCCTCTGATGGGTACGTTTGCCTTGTCAGATCGGCTGTCTATATTCCCACTTATGTTGCTTGTCTTGTCAATTGTACTTGCGTTGATCTGTATCTGATGATTAAAAGATAAATGTTCGGTTAAATCTA

Function

symbol description
babam1 Predicted to be involved in several processes, including positive regulation of DNA repair; protein K63-linked deubiquitination; and response to ionizing radiation. Predicted to act upstream of or within DNA repair; cell division; and chromatin organization. Predicted to be located in cytoplasm and nucleus. Predicted to be part of BRCA1-A complex and BRISC complex. Orthologous to human BABAM1 (BRISC and BRCA1 A complex member 1).

NR:

description
BRISC and BRCA1-A complex member 1

GO: NA

KEGG:

id description
K20776 BABAM, NBA1, MERIT40; BRISC and BRCA1-A complex member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978784.1 True 1994 mRNA 0.51 9 91832381 91849143

Neighbor

gene id symbol gene type direction distance location
plvapb plvap coding downstream 4309 91824605 ~ 91828072 (-)
ano8b LOC106560570 coding downstream 59930 91681845 ~ 91772451 (-)
abhd8b abhd8 coding downstream 154442 91660827 ~ 91677939 (-)
lhx9 LOC106560546 coding downstream 516719 91302544 ~ 91315662 (-)
LOC110524793 nek7 coding downstream 540522 91131608 ~ 91291859 (-)
LOC110524808 LOC106560602 coding upstream 129068 91973511 ~ 91980596 (-)
si:ch73-61d6.3 LOC106560577 coding upstream 156133 92005240 ~ 92045022 (-)
LOC110524822 NA coding upstream 780459 92629338 ~ 92630894 (-)
senp5 senp5 coding upstream 787712 92636855 ~ 92643037 (-)
anos1b LOC105011985 coding upstream 824551 92673694 ~ 92858324 (-)
G456071 NA non-coding downstream 52584 91779480 ~ 91779797 (-)
G456069 NA non-coding downstream 53609 91778554 ~ 91778772 (-)
G456063 NA non-coding downstream 61284 91770832 ~ 91771097 (-)
G456060 NA non-coding downstream 64594 91767520 ~ 91767787 (-)
G456056 NA non-coding downstream 71781 91760363 ~ 91760600 (-)
G456295 NA non-coding upstream 12961 91862104 ~ 91863274 (-)
G456299 NA non-coding upstream 19585 91868728 ~ 91869129 (-)
G456315 NA non-coding upstream 54786 91903929 ~ 91904434 (-)
G456317 NA non-coding upstream 56137 91905280 ~ 91906412 (-)
G456342 NA non-coding upstream 89391 91938534 ~ 91996372 (-)
G455713 NA other downstream 573397 91257107 ~ 91258984 (-)
G455649 NA other downstream 736046 91094709 ~ 91096335 (-)
G455600 NA other downstream 757618 91073996 ~ 91074763 (-)
G455630 NA other downstream 771396 91057457 ~ 91060985 (-)
LOC110524787 cfhr5 other downstream 929980 90818787 ~ 90902401 (-)
G456288 LOC106560576 other upstream 47493 91896636 ~ 91914788 (-)
G457385 NA other upstream 662776 92511919 ~ 92514384 (-)
G457422 NA other upstream 722836 92571979 ~ 92573894 (-)
G457423 NA other upstream 725240 92574263 ~ 92574754 (-)

Expression


Co-expression Network