lonp1 (lonp1)


Basic Information

Item Value
gene id lonp1
gene name lonp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 93225313 ~ 93239678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604753.2
atttaaagacgatacattttagaaatgggcggggtttatgactttgtggctgtggtaacgagTGACGACAGTAGAAAGCCCGAGATTCAACATGGCCACTTACATGATAATGCTGGGTGCTTGCAAGCAGGCTTCTAAAAACGGCGCAATCTTGTCGAGAAATTACTCCAATATGTTTACAACGGGGACCGTGCGATCTCTCGTTAGCGAGTCATCTAACTGGACTGGAATGGTGGCCAAAAGATCTTATTCTACAAACGGTACGTTTAGGAAAACATTATGCAACGCCCGCTCTTGGAACGCTGTTACATCAATGACAGGAGCCGGGAGGCTAGCAAAGCTCAACCGATGGACAAGGGTCACCGGTTTTTATTCCGGGGAAAGAGCGATTCTCGGCTGCGGGGCTTCTACCAGCTACAACCAGATAAGATTGTTTGGCAACCGAGGCAGCGGCGCTGGCTTCTCGGGGGAAGACGGGTCGGAGAGCAGCGGGTCTGGGGGAGACGAGTCGGGGGGAGATGGAGGAACACCGTACAACTCCCCCCAGATGACAGCTCTCACCCCCATGCTGGTCCCTGAAGTGTTCCCCAACGTACCACTGATCGCCGTCAGTAGGAATCCGGTTTTCCCAAGGTTTATCAAAATTATCGAGGTGAAGAACAAGGGGCTTATGGATCTTCTGAGGAGAAAAGTCCGACTTGCCCAACCGTATGCTGGAGTGTTCCTGAAGAAAGATGATGCTAATGAGACTGATGTGGTGGAGAGTCTGGATGCCATCTACAACACAGGAACTTTTGTACAGATCCATGAGATGCAGGACCTTGGTGACAAGCTGAGGATGATTGTTATGGGCCACAGAAGAATCCGCATCACCAAGCAGATGGAGGTGGAGCCGGATGAGCCTGCCTCTGCTGCCTCTGAGTCTGCCTCTGTCACTGAACCAGGGAGCAAGCCCAATGTCTCACGCCGGAAGCCCAAGAGAAAAGAGCGTAAAGAGCCAGCGATCCTGGCCGAAACGATGGAGGAGAAGGTGCAGGAGACAGACCTGACAGTAGAGGCACTCCCACTGCCCTCCTCTGATATCCTCATGGTGGAGGTAGACAACGTGGTGCACCAACAGTTTGAGGTCTCAGAGGAAGTCAAGGCCCTGACGGCAGAGATCGTGAAGACCATCCGTGACATCATCGCCCTTAATCCACTTTACAGagAGTCTGTTCTTCAGATGATGCAGGCTGGGCAGAGAGTAGTGGACAACCCCATCTATCTGAGTGACATGGGAGCCGCTCTCACAGGGGCCGAGTCACACGAGCTGCAGGACGTCCTGGAAGAGACCAATATTCCCAAACGTCTCTACAAGGCTTTATCACTTCTGAAGAAAGAATACGAGCTGAGTAAGCTGCAGCAACGTCTCGGCAGGGAGGTGGAGGAGAAGATCAAGTTGACCCACAGGAAGTACCTGCTCCAGGAGCAGCTGAAGATCATTAAGAAGGAGCTGGGCCTGGAGAAGGAGGACAAGGATGCCATAGAGGAGAAGTTCAGGGAGAGGCTGAAGGAGCGCACCGTGCCCCAACACATCATGGACGTCATCAACGAGGAGCTAAACAAACTCGGCCTGCTGGACAACCACTCCTCAGAGTTCAATGTGACCAGGAACTATCTGGACTGGCTGACCTCGATGCCCTGGGGAACTAATAGTGAGGAGAACCTGGAACTCAAACGGGCCAAAGAGGTGCTGGAGGAAGACCATTATGGGATGGACGATGTCAAGAAACGCATTCTGGAGTTTATTGCGGTGAGTCAGCTGAGAGGCTCGACCCAGGGAAAGATCCTGTGTTTCTATGGTCCTCCTGGTGTGGGGAAGACCAGTATCGCCCGCTCCATCGCCAGAGCACTCAACCGAGAGTATTTCCGCTTCAGTGTTGGTGGAATGACCGATGTCGCTGAAATCAAAGGACACAGGAGAACATATGTGGGAGCCATGCCTGGAAAAATCATTCAATGCCTCAAgaagacaaagacagaaaaccCACTGGTCCTTATTGACGAGGTTGACAAGATAGGTCGTGGTTACCAAGGCGACCCGTCCTCAGCTCTGCTGGAGCTTCTGGACCCGGAGCAGAACTTCAACTTCCTGGATCACTACCTGGATGTGCCTGTTGACCTGTCCAAGGTTCTGTTTATCTGCACCGCCAATGTGACTGACACCATCCCAGAGCCCCTCAGAGACCGTATGGAGATGATCAACGTGTCTGGATATGTGGCCCAAGAGAAACTAGCCATCGCTGAGAAGTACCTGGTACCTCAGTTGCGTACTCAATGTGGACTGACTGAGGATACGACCAACATCTCCCCAGAGGCTCTGAACCTTCTCATCAGACAGTACTGCAGAGAAAGTGGAGTCAGGAACCTACAGAAACAAGTGGAGAAGGTGTTCCGGAAAGTGGCGTTCCGTATCGTGAGTGGAGAGGAGACTGCGGTCCAGGTTACCCCTGACAACCTGCAGGATTACGTCGGCAAGCCCATCTTCACTGTGGATAGGATGTATGATGTCACACCGCCTGGTGTTGTCATGGGCCTGGCATGGACAGCCATGGgtggcACCACGCTGTTCATCGAGACGTCCCTGAGACGGCCGCGGGACACTGGGGGTAAGGATAAGGACGGCCCCAGGGACGGGTCCCTGGAGGTCACAGGGCAGCTGGGAGATGTGATGAAGGAGAGCTCTAAGATCGCCAGTACCTTCGCCAGGACTTTCCTCATGAAGCAACAGCCGGACAACGACTTTTTCTCTGGCGCCCACCTCCATTTGCACGTCCCCGAGGGTGCTACTCCCAAGGACGGCCCCAGTGCCGGCTGCACCATCGTCACGGCCCTGCTGTCCCTGGCCACCAACACGCCAGTGCGGGAGAACGTGGCCATGACTGGAGAGGTGTCCCTGACCGGAAAGATCCTGCCTGTGGGAGGCATCAAGGAGAAGACCATTGCTGCAAAGCGTGCAGGAGTGACCTGCATGATCTTACCAGCAGAGAACAAGAAGGACTTCTCTGACCTGCCGGAGTTCATCACAGAGGGCCTGGAGGTTCACTTTGTGGATCATTACAGCAAGATGTACCCCATAGTCTTTCCACAACAATGAACACTGAATTATGACTCTATGAAACTGGCACCTGAGCTGCTACCAGTGTTGGGGACAATTCAGGAAGAACAatgaaattccaattctcttcaatgtGGAGAATGTTGAATTGTAATTTGTTTTACTTTAAGAATTGAAATGGAAATCACCCCAACCCAGATGGATACAAGTTAGATCAGACATCCTGAACTATGAAAGCAGATTTTTCTTATTTGGTTGTACATTCTCACCTGTTGTTAAAAGCCCCACGTCTGACCGTGTGAGACAGCTGTGTCATGAGAGCGGAACTTTAGATAATTGTATGCATATCTATCATGTATTAGAGGGACATTTGAGGTCTAAGTTGCATTTCTAATTACTGATGTTCAACCCTTAACCCCCCAATCAGATGGGTCATGTCGCTGCTACGCAGCCTAGACTATTTGACCAAATTTTGCATGTAACTACTGATAAAACTTGCATATTATAACTTTACTTTTTTTATAAAGTTTATTCCCACTTGA

Function

symbol description
lonp1 Predicted to enable ATP-dependent peptidase activity and single-stranded DNA binding activity. Predicted to be involved in chaperone-mediated protein complex assembly; mitochondrion organization; and protein quality control for misfolded or incompletely synthesized proteins. Predicted to act upstream of or within protein catabolic process and proteolysis. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial matrix. Human ortholog(s) of this gene implicated in CODAS syndrome. Orthologous to human LONP1 (lon peptidase 1, mitochondrial).

NR:

description
lon protease homolog, mitochondrial

GO:

id name namespace
GO:0051131 chaperone-mediated protein complex assembly biological_process
GO:0090296 regulation of mitochondrial DNA replication biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0034599 cellular response to oxidative stress biological_process
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins biological_process
GO:0070407 oxidation-dependent protein catabolic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004176 ATP-dependent peptidase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K08675 PRSS15, PIM1; ATP-dependent Lon protease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604753.2 True 3639 mRNA 0.51 18 93225313 93239678

Neighbor

gene id symbol gene type direction distance location
lmnb2 lmnb2 coding downstream 14214 93189533 ~ 93211099 (-)
commd2 commd2 coding downstream 46806 93170834 ~ 93178507 (-)
wwtr1 LOC106560594 coding downstream 60800 93100251 ~ 93164513 (-)
LOC110522899 NA coding downstream 147310 93073370 ~ 93078003 (-)
tm4sf18 LOC106560593 coding downstream 163012 93044898 ~ 93062301 (-)
LOC110524839 LOC106560600 coding upstream 60812 93300490 ~ 93412367 (-)
insrb LOC106583950 coding upstream 190523 93430201 ~ 93612439 (-)
use1 use1 coding upstream 400786 93640464 ~ 93652540 (-)
LOC110524842 NA coding upstream 413185 93652863 ~ 93702545 (-)
si:dkeyp-82a1.6 LOC106560500 coding upstream 466038 93705716 ~ 93709937 (-)
G457573 rpl36 non-coding downstream 311 93221917 ~ 93225002 (-)
G457657 NA non-coding downstream 6230 93197623 ~ 93219083 (-)
G457660 NA non-coding downstream 18954 93206017 ~ 93206359 (-)
G457653 NA non-coding downstream 39651 93185459 ~ 93185662 (-)
G457652 NA non-coding downstream 40546 93184520 ~ 93184767 (-)
G457684 NA non-coding upstream 28566 93268244 ~ 93270500 (-)
G457685 NA non-coding upstream 31277 93270955 ~ 93271165 (-)
G457686 NA non-coding upstream 31740 93271418 ~ 93271624 (-)
G457689 NA non-coding upstream 35504 93275182 ~ 93275429 (-)
G457692 NA non-coding upstream 44318 93283996 ~ 93284230 (-)
G457595 NA other downstream 205033 93018394 ~ 93020280 (-)
G457537 NA other downstream 258321 92950678 ~ 92966992 (-)
G457534 NA other downstream 281788 92940506 ~ 92943525 (-)
G457491 LOC106560589 other downstream 293674 92881393 ~ 92931639 (-)
LOC110524822 NA other downstream 594501 92629338 ~ 92630894 (-)
G457740 NA other upstream 202222 93441900 ~ 93442413 (-)
G457742 NA other upstream 222674 93462352 ~ 93463079 (-)
G457909 NA other upstream 621168 93860846 ~ 93863614 (-)
G459282 NA other upstream 2319012 95558690 ~ 95559210 (-)
G459323 NA other upstream 2362745 95602423 ~ 95602927 (-)

Expression


Co-expression Network