si:dkeyp-82a1.6 (LOC106560500)


Basic Information

Item Value
gene id si:dkeyp-82a1.6
gene name LOC106560500
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 93705716 ~ 93709937 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604799.2
CTATGTGTTTCCAACGAAATCTGTTGAACGTACAACTTATTTCctgttttgttaaaaaaaaaaaaacgacccATCCTAGGAAATGCGTTTGAGAAGTTGCGCTATAGGGTGAATATTTAATTTGCGCTATAAGGTATAATTTAGAGTGGAACCATGGATCCTGAGATTTTACGAAACAACTCTGCTCAACCAGCGAGGAGGTCGACAAGGCAATCGATGAAAGCAGTTACTTTAGAGTTGGCACCCAGAGGTccgctgaagaggaggagggaagagatcAAGCTCCCATCCACACCTGTCAATGGCTCCATGGAGGACGATGAGTCCCCTGGCAAGAAGAATAAGTCAGAGATTGGAGTGGCAGGGGATGGCAGTTGTGATGAGGATGAGATGGATGTCCAGGAGACCACTGGGGATGAAGATCTGGACTCGGAGCAGAACGAGGAACAGGAGATGAGTGCCGAGGAAGACTCCTCCCATCACAATGTCACACAGCATAAACGTCCCTTTGATACAACTTTGATGGGGCACATGAATGTGAACGTACCGAAGACGGTCGGTGTTGGCTCCCAAGAGATTGTAGATCCCAGGTTGTACCTACTGAGTCGCAGTTCCATTCATACAACCGAGGAGCTGAAAACAGATCTGTTTAAAACCAAGAGAATGGACATGTCAAGAAGAGCTGCGTCTGGTACCAAGACTGCAACCCAACTCAGACCCCTGGAGAACCGACCAGAGGTTTTGATTTACAAGACTAGCAGCATGGCACAGTACAAGGAGAATATGGAGAGGAAAGGCAAAAAAACTGGATTGCCCAGCGCTAACCATTATAGCATGAGAGGTTACCCCACCTCTGAAGAGTCCTACACATCGAGCTGTCGGGTGAACAATATTCCTACTCGAAAACAAACTACCAAACTCAGAAAACAAGATATTAAGAAAtcagctgttatcaaggcaattCCTGGGAAAGCTTTTGGGGGGTACATGTGGAAACTGTGTCAGGCTCTGGTGCTGCTTGTCTCTGGTGTTCTGGGTCTCCTGGCCTACCAGCACTTCTCACTGCCCTTCGGACCTTCAGGGGGTGGAGATCATCCAGCCTGGCCTGTGAGAGAGGGGAAGTTTGTTTCTCAGTTATCTGCTCTGGAGGCCCTGTTCCCCGGGCAGCGCTCTGAGCTGTGGAGGAGGAGCAGGATCCACCTGGAGAGGCACCTCCAGACGGCCCGGCCAACGGAGCCAGTCAGCCTGATGCTGACAGCAGGCCGCAGGGGGGAGAAGACGCTGCACTGCCTTGCCCTGCATCTGGCCTCCGCCTTCTCCTCTGCCCTCAACGCCTcctccatccacatcgacggggccagCAAAGCTGGCCAGGACAGCGACCAGGTCAAGCTGGACATCGACACCCAGCTGGGGGAAGCCTTCGAGGGGGACCAGCCCGTAGCCGTCATCCACCGCTTCGAGGAGCTGCCCCCAGGTTCCACGATCATATTCTACCGCTACTGTGACCACGAGAACGCAGCCTACAAAGAGGTGTTCCTGCTCTTCACCGTGCTGCTGCCTGAGGAGGAGTTAGGGAAGGAGCTCAGTCTGAATGAGGTTGAGGAGAGGGTCCAGgattatattacagacacctttGTGGAAAGTAACAGCTCAGACAAGCCTGGTTCCTATAATCGGATGGACCTGGACAAGCTGAGTGGACTATGGAGCCGTATCTCCCACCTGGTCCTGCCTGTggcagtagaggagaggatagagcagggaggATGCATGGACTGAACTGGCAGCTACAGGAGACGTCTGGCTAGGTAGGAGCAGGCTCGCTGGGCTGGGCTCCTCTCCGTCTTTATGGAGCTCTGGAGAAGCTGTGGCTCTGTAGCTGAGGGGTGATGGTATGAAGACACACCCAGGTGCTCTGTGGGGTTTTTAGACTTCACAGGTGAACTCTAGGACCTAGAGGTGATATCTTCCAGAGGTCATATGCTCTTAATAGAGATTTCTATGCTGACAGATCCAAACCAACATTTAATATTCTGCCCAACTGCACTGTTTAGTTTTAACTGAGATGTCCTCTCTTTCTGGTCCTCTTGTCATATTTCTGATCATTTCACAACTGCCAGCTGCTGTAATTACAGAGTGACGGTCTGGGTTGAGGAATCGGGAAGTAATTACAGAGTGACGGTCTGGGTTGAGAAATCGGGAAGTAATTACAGAGTGACGGTCTGGGTTGAGGACATCAGTTTGTTGTGGGTGGTTTTTATTTCAGACCCAAAGTTTGCTTTATAGGGAAGATGTACAGCATTGATTTTTATAATATGATGTCTAATTTCACGTTTTTCTTGTTTTGTCTTTTCTACTGAAAATGAAATGAAATCGTTACCTTGAAAAAAAGATTCCTTTTGCTATTCAATTTAAAGTGTTTTGTTGATGCATGAAATTTAATCTGAGTCTAAATTCCAGGATTTCACCACTGATCCACGCATTGGTAAAATGACTAACTGAGTTCCTTTTCTGCTGTTCAACGCTCATGTATACATATTTTAAAAATATCATTTCAATACCTCCATTCCCTGCATATTTGGCTGAAATGTCTTGCACTAATTCTCTGGTTTTACATTTTCAACCAACCAGCTCACCTCGAGGATTGGCAGACATGAAGACGGAAATAATCGTAATTTGGGATGCTGCGTTAggtttgtctctctctatctatctctctcgctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>XR_002473667.2
CTATGTGTTTCCAACGAAATCTGTTGAACGTACAACTTATTTCctgttttgttaaaaaaaaaaaaacgacccATCCTAGGAAATGCGTTTGAGAAGTTGCGCTATAGGGTGAATATTTAATTTGCGCTATAAGGTATAATTTAGAGTGGAACCATGGATCCTGAGATTTTACGAAACAACTCTGCTCAACCAGCGAGGAGGTCGACAAGGCAATCGATGAAAGCAGTTACTTTAGAGTTGGCACCCAGAGGTccgctgaagaggaggagggaagagatcAAGCTCCCATCCACACCTGTCAATGGCTCCATGGAGGACGATGAGTCCCCTGGCAAGAAGAATAAGTCAGAGATTGGAGTGGCAGGGGATGGCAGTTGTGATGAGGATGAGATGGATGTCCAGGAGACCACTGGGGATGAAGATCTGGACTCGGAGCAGAACGAGGAACAGGAGATGAGTGCCGAGGAAGACTCCTCCCATCACAATGTCACACAGCATAAACGTCCCTTTGATACAACTTTGATGGGGCACATGAATGTGAACGTACCGAAGACGGTCGGTGTTGGCTCCCAAGAGATTGTAGATCCCAGGTTGTACCTACTGAGTCGCAGTTCCATTCATACAACCGAGGAGCTGAAAACAGATCTGTTTAAAACCAAGAGAATGGACATGTCAAGAAGAGCTGCGTCTGGTACCAAGACTGCAACCCAACTCAGACCCCTGGAGAACCGACCAGAGGTTTTGATTTACAAGACTAGCAGCATGGCACAGTACAAGGAGAATATGGAGAGGAAAGGCAAAAAAACTGGATTGCCCAGCGCTAACCATTATAGCATGAGAGGTTACCCCACCTCTGAAGAGTCCTACACATCGAGCTGTCGGGTGAACAATATTCCTACTCGAAAACAAACTACCAAACTCAGAAAACAAGATATTAAGAAAtcagctgttatcaaggcaattCCTGGGAAAGCTTTTGGGGGGTACATGTGGAAACTGTGTCAGGCTCTGGTGCTGCTTGTCTCTGGTGTTCTGGGTCTCCTGGCCTACCAGCACTTCTCACTGCCCTTCGGACCTTCAGGGGGTGGAGATCATCCAGCCTGGCCTGTGAGAGAGGGGAAGTTTGTTTCTCAGTTATCTGCTCTGGAGGCCCTGTTCCCCGGGCAGCGCTCTGAGCTGTGGAGGAGGAGCAGGATCCACCTGGAGAGGCACCTCCAGACGGCCCGGCCAACGGAGCCAGTCAGCCTGATGCTGACAGCAGGCCGCAGGGGGGAGAAGACGCTGCACTGCCTTGCCCTGCATCTGGCCTCCGCCTTCTCCTCTGCCCTCAACGCCTcctccatccacatcgacggggccagCAAAGCTGGCCAGGACAGCGACCAGGTCAAGCTGGACATCGACACCCAGCTGGGGGAAGCCTTCGAGGGGGACCAGCCCGTAGCCGTCATCCACCGCTTCGAGGAGCTGCCCCCAGGTTCCACGATCATATTCTACCGCTACTGTGACCACGAGAACGCAGCCTACAAAGAGGTGTTCCTGCTCTTCACCGTGCTGCTGCCTGAGGAGGAGTTAGGGAAGGAGCTCAGTCTGAATGAGGTTGAGGAGAGGGTCCAGgattatattacagacacctttGTGGAAAGTAACAGCTCAGACAAGCCTGGTTCCTATAATCGGATGGACCTGGACAAGCTGAGTGGACTATGGAGCCGTATCTCCCACCTGGTCCTGCCTGTggcagtagaggagaggatagagcagggaggATGCATGGACTGAACTGGCAGCTACAGGAGACGTCTGGCTAGGTAGGAGCAGGCTCGCTGGGCTGGGCTCCTCTCCGTCTTTATGGAGCTCTGGAGAAGCTGTGGCTCTGTAGCTGAGGGGTGATGGTATGAAGACACACCCAGGTGCTCTGTGGGGTTTTTAGACTTCACAGGTGAACTCTAGGACCTAGAGGTGATATCTTCCAGAGGTCATATGCTCTTAATAGAGATTTCTATGCTGACAGATCCAAACCAACATTTAACTGAGATGTCCTCTCTTTCTGGTCCTCTTGTCATATTTCTGATCATTTCACAACTGCCAGCTGCTGTAATTACAGAGTGACGGTCTGGGTTGAGGAATCGGGAAGTAATTACAGAGTGACGGTCTGGGTTGAGAAATCGGGAAGTAATTACAGAGTGACGGTCTGGGTTGAGGACATCAGTTTGTTGTGGGTGGTTTTTATTTCAGACCCAAAGTTTGCTTTATAGGGAAGATGTACAGCATTGATTTTTATAATATGATGTCTAATTTCACGTTTTTCTTGTTTTGTCTTTTCTACTGAAAATGAAATGAAATCGTTACCTTGAAAAAAAGATTCCTTTTGCTATTCAATTTAAAGTGTTTTGTTGATGCATGAAATTTAATCTGAGTCTAAATTCCAGGATTTCACCACTGATCCACGCATTGGTAAAATGACTAACTGAGTTCCTTTTCTGCTGTTCAACGCTCATGTATACATATTTTAAAAATATCATTTCAATACCTCCATTCCCTGCATATTTGGCTGAAATGTCTTGCACTAATTCTCTGGTTTTACATTTTCAACCAACCAGCTCACCTCGAGGATTGGCAGACATGAAGACGGAAATAATCGTAATTTGGGATGCTGCGTTAggtttgtctctctctatctatctctctcgctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>XM_021604800.2
GCTATGTGTTTCCAACGAAATCTGTTGAACGTACAACTTATTTCctgttttgttaaaaaaaaaaaaacgacccATCCTAGGAAATGCGTTTGAGAAGTTGCGCTATAGGGTGAATATTTAATTTGCGCTATAAGGTATAATTTAGAGTGGAACCATGGATCCTGAGATTTTACGAAACAACTCTGCTCAACCAGCGAGGAGGTCGACAAGGCAATCGATGAAAGTTACTTTAGAGTTGGCACCCAGAGGTccgctgaagaggaggagggaagagatcAAGCTCCCATCCACACCTGTCAATGGCTCCATGGAGGACGATGAGTCCCCTGGCAAGAAGAATAAGTCAGAGATTGGAGTGGCAGGGGATGGCAGTTGTGATGAGGATGAGATGGATGTCCAGGAGACCACTGGGGATGAAGATCTGGACTCGGAGCAGAACGAGGAACAGGAGATGAGTGCCGAGGAAGACTCCTCCCATCACAATGTCACACAGCATAAACGTCCCTTTGATACAACTTTGATGGGGCACATGAATGTGAACGTACCGAAGACGGTCGGTGTTGGCTCCCAAGAGATTGTAGATCCCAGGTTGTACCTACTGAGTCGCAGTTCCATTCATACAACCGAGGAGCTGAAAACAGATCTGTTTAAAACCAAGAGAATGGACATGTCAAGAAGAGCTGCGTCTGGTACCAAGACTGCAACCCAACTCAGACCCCTGGAGAACCGACCAGAGGTTTTGATTTACAAGACTAGCAGCATGGCACAGTACAAGGAGAATATGGAGAGGAAAGGCAAAAAAACTGGATTGCCCAGCGCTAACCATTATAGCATGAGAGGTTACCCCACCTCTGAAGAGTCCTACACATCGAGCTGTCGGGTGAACAATATTCCTACTCGAAAACAAACTACCAAACTCAGAAAACAAGATATTAAGAAAtcagctgttatcaaggcaattCCTGGGAAAGCTTTTGGGGGGTACATGTGGAAACTGTGTCAGGCTCTGGTGCTGCTTGTCTCTGGTGTTCTGGGTCTCCTGGCCTACCAGCACTTCTCACTGCCCTTCGGACCTTCAGGGGGTGGAGATCATCCAGCCTGGCCTGTGAGAGAGGGGAAGTTTGTTTCTCAGTTATCTGCTCTGGAGGCCCTGTTCCCCGGGCAGCGCTCTGAGCTGTGGAGGAGGAGCAGGATCCACCTGGAGAGGCACCTCCAGACGGCCCGGCCAACGGAGCCAGTCAGCCTGATGCTGACAGCAGGCCGCAGGGGGGAGAAGACGCTGCACTGCCTTGCCCTGCATCTGGCCTCCGCCTTCTCCTCTGCCCTCAACGCCTcctccatccacatcgacggggccagCAAAGCTGGCCAGGACAGCGACCAGGTCAAGCTGGACATCGACACCCAGCTGGGGGAAGCCTTCGAGGGGGACCAGCCCGTAGCCGTCATCCACCGCTTCGAGGAGCTGCCCCCAGGTTCCACGATCATATTCTACCGCTACTGTGACCACGAGAACGCAGCCTACAAAGAGGTGTTCCTGCTCTTCACCGTGCTGCTGCCTGAGGAGGAGTTAGGGAAGGAGCTCAGTCTGAATGAGGTTGAGGAGAGGGTCCAGgattatattacagacacctttGTGGAAAGTAACAGCTCAGACAAGCCTGGTTCCTATAATCGGATGGACCTGGACAAGCTGAGTGGACTATGGAGCCGTATCTCCCACCTGGTCCTGCCTGTggcagtagaggagaggatagagcagggaggATGCATGGACTGAACTGGCAGCTACAGGAGACGTCTGGCTAGGTAGGAGCAGGCTCGCTGGGCTGGGCTCCTCTCCGTCTTTATGGAGCTCTGGAGAAGCTGTGGCTCTGTAGCTGAGGGGTGATGGTATGAAGACACACCCAGGTGCTCTGTGGGGTTTTTAGACTTCACAGGTGAACTCTAGGACCTAGAGGTGATATCTTCCAGAGGTCATATGCTCTTAATAGAGATTTCTATGCTGACAGATCCAAACCAACATTTAATATTCTGCCCAACTGCACTGTTTAGTTTTAACTGAGATGTCCTCTCTTTCTGGTCCTCTTGTCATATTTCTGATCATTTCACAACTGCCAGCTGCTGTAATTACAGAGTGACGGTCTGGGTTGAGGAATCGGGAAGTAATTACAGAGTGACGGTCTGGGTTGAGAAATCGGGAAGTAATTACAGAGTGACGGTCTGGGTTGAGGACATCAGTTTGTTGTGGGTGGTTTTTATTTCAGACCCAAAGTTTGCTTTATAGGGAAGATGTACAGCATTGATTTTTATAATATGATGTCTAATTTCACGTTTTTCTTGTTTTGTCTTTTCTACTGAAAATGAAATGAAATCGTTACCTTGAAAAAAAGATTCCTTTTGCTATTCAATTTAAAGTGTTTTGTTGATGCATGAAATTTAATCTGAGTCTAAATTCCAGGATTTCACCACTGATCCACGCATTGGTAAAATGACTAACTGAGTTCCTTTTCTGCTGTTCAACGCTCATGTATACATATTTTAAAAATATCATTTCAATACCTCCATTCCCTGCATATTTGGCTGAAATGTCTTGCACTAATTCTCTGGTTTTACATTTTCAACCAACCAGCTCACCTCGAGGATTGGCAGACATGAAGACGGAAATAATCGTAATTTGGGATGCTGCGTTAggtttgtctctctctatctatctctctcgctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

NR:

description
torsin-1A-interacting protein 2-like isoform X2

GO: NA

KEGG:

id description
K23001 TOR1AIP; torsin-1A-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604799.2 False 2786 mRNA 0.48 8 93705716 93709936
XR_002473667.2 False 2755 mRNA 0.48 9 93705716 93709936
XM_021604800.2 True 2784 mRNA 0.48 8 93705716 93709937

Neighbor

gene id symbol gene type direction distance location
LOC110524842 NA coding downstream 3171 93652863 ~ 93702545 (-)
use1 use1 coding downstream 53176 93640464 ~ 93652540 (-)
insrb LOC106583950 coding downstream 93277 93430201 ~ 93612439 (-)
LOC110524839 LOC106560600 coding downstream 293349 93300490 ~ 93412367 (-)
lonp1 lonp1 coding downstream 466038 93225313 ~ 93239678 (-)
atf6 atf6 coding upstream 99866 93809803 ~ 93934248 (-)
LOC110524879 LOC106560647 coding upstream 363051 94072988 ~ 94094473 (-)
LOC110524878 LOC106560653 coding upstream 385042 94094979 ~ 94099229 (-)
LOC110524880 LOC106592820 coding upstream 393662 94103599 ~ 94115079 (-)
scyl3 scyl3 coding upstream 455301 94165238 ~ 94174003 (-)
G457817 NA non-coding downstream 46636 93657232 ~ 93659080 (-)
G457805 NA non-coding downstream 88186 93617103 ~ 93617530 (-)
G457789 NA non-coding downstream 124138 93581287 ~ 93581578 (-)
G457773 NA non-coding downstream 153362 93551890 ~ 93552354 (-)
G457855 NA non-coding upstream 2057 93711994 ~ 93712330 (-)
G457857 NA non-coding upstream 3463 93713400 ~ 93713635 (-)
G457858 NA non-coding upstream 4042 93713979 ~ 93714253 (-)
G457853 NA non-coding upstream 7514 93717451 ~ 93717736 (-)
G457872 NA non-coding upstream 60802 93770739 ~ 93771088 (-)
G457742 NA other downstream 242637 93462352 ~ 93463079 (-)
G457740 NA other downstream 263303 93441900 ~ 93442413 (-)
G457595 NA other downstream 685436 93018394 ~ 93020280 (-)
G457537 NA other downstream 738724 92950678 ~ 92966992 (-)
G457534 NA other downstream 762191 92940506 ~ 92943525 (-)
G457909 NA other upstream 150909 93860846 ~ 93863614 (-)
G459282 NA other upstream 1848753 95558690 ~ 95559210 (-)
G459323 NA other upstream 1892486 95602423 ~ 95602927 (-)
G459813 NA other upstream 2477531 96187468 ~ 96187983 (-)
G460020 NA other upstream 2750970 96460907 ~ 96464598 (-)

Expression

si:dkeyp-82a1.6(LOC106560500) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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si:dkeyp-82a1.6(LOC106560500) Expression in each Bioproject

Bar chart with 21 bars.
si:dkeyp-82a1.6(LOC106560500) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network