atf6 (atf6)


Basic Information

Item Value
gene id atf6
gene name atf6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 93809803 ~ 93934248 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978881.1
ATTTACGGTAAAGCAAGACGTgtatcttgttttttttaaagtagaaCAGGAAGAACATTTATCTGTGAAAACGAACCAGCAACATGTACAGCCGATGCTAAGCTTATGACCTATTAGAATAAACTATTTCTTTAAAATCGGTTACTAATGTATTCGAGGAAGTATGTCGTCCGATTTAATGTTAGACTTCGAGACTCAAGAACAACAAATGATGAACAGTGAAACTGGCACCATGTCCATCGACCAGGATGGCGAGTGGGACATCAGCCTGTTTGACGAGCTGGACAACCTTGGAGATGCAGACAAACTTTTTCAGGGCTTGGAGTGCGTGGGATATGCCGGCGATGCCCCAGACCTCGACTTTGACATCGACCTGCCTCCCTGGAGCACTGACACAGGCAGCACCTACACAGATGGGGATCTGAGtgtggactctctctctcctgcccatACCATGAGCTCTGTCACCTCGCCTGCATCCCGAGAGGCCCTGTCACCTTACTCCATACAAGAGGATCTAGCCCAAtctcctcagccctctcctgcCGTCTCTGTCTGCTCCGAGTCCAGTGGCTTCTCAGAGCCCCCCCTGCCCCTGGCCAAGAGGGCCCCCAAGAGGACCAATCAGGCTACGCGAGTGAAGAGGCCTATCCAGCTCACCCCCAAGGTGTCCATCCAGCCCAGACCAGTTGTAATGGCTGTACCCCAGCATGCCGCGGGCCCTCTCCAGACCATCATCATCCAGCCCCTGCAGACCACCCTGGTGCCTCACCCTGCTGTGGTCAAACCTGCCCCTGTCAGCATACAGCCAGCGCCACCTATAGGTGGTCCGTTGGTGCTGTGCCAGCCGGCCCAGGTGCTGCAGATCCACACTCCACAGGCAGTCACCGGGCACCTGGTTACCATGCCAACACTGACCCAAGAGAGGCCCGCCCCCATTGCAGTCACACTCCACAGCCCTGGCTCTGACGAagatTCGAAGGTGTCCCAGAGGCAGCAGAGGATGATAAAGAACAGGGAGTCAGCGTCTCAGTCCCGTAAGAAGAAGAAGGAGTACCTGCAGACGCTGGAGGTCCGTCTCAAGATGGCGCTGTCTGAGAACCAGCTGCTCAAGAATGAGAACGGCACCCTGAAGAGACAGCTGGAGGGACTACTGTCAGAGAACACGGTTCTGAAGACCAGTGCTCCTAAGAGGCGGGCCATTTGTCTCATGGTTGTGCTGGTGTTCCTCATGCTCAATGTGGGACCAATGAGTTTGTTTGAAGGTGGCCGTGGCTCTAAACTTCAGGCTGGCTCCATGCACAGCGGCAGACATCTGCTGGACTTCTCCCCAGAGACAGACACCTCGGTGGGCCCCGAATCCCTCCAGACCACCCCTCCGACCCACAGTTCGGAGGACAAGGCTTTGATGGTGGTGAAGAAGGATCCTCTGTTCTTCggacctcctcctccctgtctgccgCCTGTCAACAGGACCAAATGCCTCAGGTTGAACCATGAGCTGCGAGGCTGGGTCCATCGACATGAGGTGGAGCGGACCAAGACCAGACGCATGAGCAACAGCCAGCACCGGGCAAACAGGACTATCCCTAAAGAGGATAAGAAGGCTGAGGTGTCCCAGGTCCTAACAGTCCAGTACACTGACTCCACAGAGAAgaGCCCAGGTAATGAGCTGCAGGTGTACTTCGCTCCTCACCGCACCTACAACGACTTCTTTGACGAGATCCATCGCCGTGGAGACACCTTCTACGTGGTGTCTTTCCGCAGGGATCACCTTTTACTTCCCGCTACCAGCCACAACAAAGGAAGTAGGCCCAAGATGTCCGTGGTGTTGCCAGCCATGAACATTAATGATCGTGTGATCAAGGACCAGGAGTTTGAGGTGATGATGCAGATTGACTGTGAGGTCACAGACACCCGGATCCTCCACATCAAGTCCTCCAGTATCCCACCATTCCTGCGTGTCAACCGCACCGACACCCTGTACCCGCCTTCACCTGCGGACAGCAAGGCCACGTCTCCTGTCCAGGTGCTCATGGGTTCCGCGTAACCTCTATCAACCAATCGAATTGACGCACAAACCCGTAACTCCCACCAACCAATTGAACA

Function

symbol description
atf6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within endoplasmic reticulum unfolded protein response and response to hypoxia. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in nucleus. Is expressed in brain; head; liver; and trunk. Human ortholog(s) of this gene implicated in achromatopsia 7. Orthologous to human ATF6 (activating transcription factor 6).

NR:

description
cyclic AMP-dependent transcription factor ATF-6 alpha

GO:

id name namespace
GO:0050794 regulation of cellular process biological_process

KEGG:

id description
K09054 ATF6A; cyclic AMP-dependent transcription factor ATF-6 alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978881.1 True 2109 mRNA 0.55 16 93809803 93934248

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-82a1.6 LOC106560500 coding downstream 99866 93705716 ~ 93709937 (-)
LOC110524842 NA coding downstream 107258 93652863 ~ 93702545 (-)
use1 use1 coding downstream 157263 93640464 ~ 93652540 (-)
insrb LOC106583950 coding downstream 197364 93430201 ~ 93612439 (-)
LOC110524839 LOC106560600 coding downstream 397436 93300490 ~ 93412367 (-)
LOC110524879 LOC106560647 coding upstream 138740 94072988 ~ 94094473 (-)
LOC110524878 LOC106560653 coding upstream 160731 94094979 ~ 94099229 (-)
LOC110524880 LOC106592820 coding upstream 169351 94103599 ~ 94115079 (-)
scyl3 scyl3 coding upstream 230990 94165238 ~ 94174003 (-)
LOC110524883 LOC106560651 coding upstream 278228 94212476 ~ 94221154 (-)
G457872 NA non-coding downstream 38715 93770739 ~ 93771088 (-)
G457853 NA non-coding downstream 92067 93717451 ~ 93717736 (-)
G457858 NA non-coding downstream 95550 93713979 ~ 93714253 (-)
G457857 NA non-coding downstream 96168 93713400 ~ 93713635 (-)
G457855 NA non-coding downstream 97473 93711994 ~ 93712330 (-)
G457925 NA non-coding upstream 1963 93936211 ~ 93936439 (-)
G458136 NA non-coding upstream 25191 93959439 ~ 93960359 (-)
G458159 NA non-coding upstream 66294 94000542 ~ 94001093 (-)
G458160 NA non-coding upstream 68208 94002456 ~ 94004098 (-)
G458221 NA non-coding upstream 183853 94118101 ~ 94134771 (-)
G457742 NA other downstream 346724 93462352 ~ 93463079 (-)
G457740 NA other downstream 367390 93441900 ~ 93442413 (-)
G457595 NA other downstream 789523 93018394 ~ 93020280 (-)
G457537 NA other downstream 842811 92950678 ~ 92966992 (-)
G457534 NA other downstream 866278 92940506 ~ 92943525 (-)
G459282 NA other upstream 1624442 95558690 ~ 95559210 (-)
G459323 NA other upstream 1668175 95602423 ~ 95602927 (-)
G459813 NA other upstream 2253220 96187468 ~ 96187983 (-)
G460020 NA other upstream 2526659 96460907 ~ 96464598 (-)
G460331 NA other upstream 2846595 96780843 ~ 96782021 (-)

Expression


Co-expression Network