rxrgb (LOC106560629)


Basic Information

Item Value
gene id rxrgb
gene name LOC106560629
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 93940018 ~ 94018526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978899.1
TACTTTCTGTTTGGGGAAATGATTTGTGTCACATTTTATACATTCTAGGTTGCAACGTTGTTACGCTGCGAGGCAAGAAGTTTCGTCAGGTTCGTGGGCTTAGATATCTCGATGACTGTTGTCATTGGGAGGAGACCTGCTTTTGCCACCCCCTTGCTGGGCCCCGCGTTGACCTGCCCTTGCACAGTTTTCCCGGTTGGGGAGTGTTATTCGCTGGGATGCTGTTGCTGCCTGTGACGGCGCGGCTACAGAGAACGACACAGCGCTAACTCACACATTATGGACAGAAGGCATAATGACCCATATTTACACCCCAATTCCCAAGGGCCGATGAGCATGCCCCACTCCCATGGCCCTCCAATGGGTGGCATGGTGGGGCACCCCTCCGTCATCAGCACCTCCAGGACCCTTCCATCACCAATGAGCACCCTGGGCGCGCCCATGAACGGCCTAGCGTCGCCCTACTCCGTCATCACGTCCTCCCTGGGCGCACCCTCCACGCCAGGGATCAACTTCGGATCGCTCCACAGTCCACAGATGAGAGAGATGAACAGTGTCAGTAGTTCGGAGGACATCAAGCCTCCCCCGGGTCTCCTGAATCTAGGGGACATCAACTACAACTGCACCAGTCCTGGAGGAATGTCCAAACACGTATGTGCCATCTGTGGAGACCGATCATCAGGGAAGCACTATGGCGTGTACAGCTGTGAAGGCTGCAAAGGCTTCTTCAAGAGAACCATCCGGAAAGATCTCACCTATACGTGTCGAGACAGCAAGGAGTGCCTGATAGACAAACGACAGCGCAACCGCTGTCAATACTGTCGCTACCAGAAGTGCCTAGCCATGGGCATgaagagagaaggtgtgtCGGTGCAGGAGGAGAGACAGCgggggagggagcgaggggagaACGAGGTGGAGTCCACCAGTAGTTTTAATGAGGAGATGCCCGTCGATAAGATTCTGGAAGCAGAGCTTGCCGTGGAACCCAAGACAGAGACATCAGCAGACGAAGGCCCTGGCAACTCGACAAACGACCCAGTCACCAACATCTGCCAGGCAGCAGACAAACAGCTGTTCACCCTGGTGGAGTGGGCCAAGAGGATTCCTCACTTCTCAGAGCTGCCCTTAGACGACCAGGTTATTCTACTACGAGCAGGCTGGAACGAGCTCCTCATCGCGTCCTTCTCACACCGCTCTGTCACGGTGAAAGACGGAATCCTATTGGCCACGGGTCTCCACGTCCAGAGAAGTAGTGCTCATAGTGCCGGAGTGGGCTCCATCTTTGACAGagtcctgacagagttggtgtctAAGATGAAAGACATGCAGATGGACAAGACAGAGCTGGGCTGCCTACGAGCCATCGTCCTCTTCAACCCAGATGCAAAAGGCCTGTCAAATTCACCGGAGGTGGAAGGGCTGAGGGAGAAGGTCTACGCCTCGCTGGAGTCCTACACCAAAGCCAAGTACCCAGACCAACCCGGCAGGTTTGCAAAACTGTTGCTGCGTCTCCCCGCCCTGCGCTCCATAGGCCTCAAGTGTTTGGAGCACCTGTTTTTCTTCAAGCTGATAGGAGACACGCCCATAGACACCTTTCTCATGGAGATGCTCGAAGCGCCACACCAAATCACATGACACGAGTCCCACTTCCCTCTGTATATACTCCCACAATGTAATTGATATGAAGATGAAACTCGATTCGAGTTGTAAAACAGACGTATTTTGTACAAAGAACAAATGATTATTAATGTCAACaatgtgtgttttttgggggggtacgAGGAACGTCCGGTTTAAGAGAGTGGAATGgggtgtaaaaaaaatactctgttAAAAACACAATTCTAATAAAATTTTGTAAATAGATAATTTCAGGTATCCATTTTAAAAGCAACCCAAAGCAATattgaaaataatattttattaaaAGATGAATTGTATAACACTGAAAACCGTCCCTAAGTTTCTAAAAAAAATTAATTTTAGAATTCTTCCAGAATAAAATAatatacaatttgga
>XM_036978897.1
GAATAGACAGTTCCAGGAATGCAAGGCTTGTTAGacgacacgcacatacacactcgtgcatgcgcgcacacacacacacacaaaccatgcTGGACTCTTTTGGCTCTAAGGCACGGAgtgacagggacacacacacacacaggcgacGTGCAGTGTGCCAACACAGCGCTAACAGGCATGTATGCTGCCCTAATTACAAAAAAAGGCATCCTGGGAACTTACGGACGTGcctaaagaagagaggagagagaaaagagagatccTCATTTCAGATATAGAGGGTAGGAATTCTAGAGTTAAACGAGTTGATCCGCGACTGCAATTGGTTCCTCTGGGATTGATCAGAGAATAATCTGGTTAATCCCATAAACGACGCGGGTGGActttgcctctctccctccttttcccttcgtccctccctctctttcctctatccgtccctctctgtcctctcgtctctctctcctgtcgGAGCGGGAGCAGGAGTCAGAGTACGTCCTTCTCTCCAGCTGCTAGGGAGGCTGTGTTCTTTGGCAAGGTAGTTCGTCTGtcacccctctccaccccctctggagCCATGTGGCACCCAATGGCATCAGCCTCATCTGGAAGCCCCATAAAGGAGCTGGGTTATATGCACTATTCCCAAGGGCCGATGAGCATGCCCCACTCCCATGGCCCTCCAATGGGTGGCATGGTGGGGCACCCCTCCGTCATCAGCACCTCCAGGACCCTTCCATCACCAATGAGCACCCTGGGCGCGCCCATGAACGGCCTAGCGTCGCCCTACTCCGTCATCACGTCCTCCCTGGGCGCACCCTCCACGCCAGGGATCAACTTCGGATCGCTCCACAGTCCACAGATGAGAGAGATGAACAGTGTCAGTAGTTCGGAGGACATCAAGCCTCCCCCGGGTCTCCTGAATCTAGGGGACATCAACTACAACTGCACCAGTCCTGGAGGAATGTCCAAACACGTATGTGCCATCTGTGGAGACCGATCATCAGGGAAGCACTATGGCGTGTACAGCTGTGAAGGCTGCAAAGGCTTCTTCAAGAGAACCATCCGGAAAGATCTCACCTATACGTGTCGAGACAGCAAGGAGTGCCTGATAGACAAACGACAGCGCAACCGCTGTCAATACTGTCGCTACCAGAAGTGCCTAGCCATGGGCATgaagagagaaggtgtgtCGGTGCAGGAGGAGAGACAGCgggggagggagcgaggggagaACGAGGTGGAGTCCACCAGTAGTTTTAATGAGGAGATGCCCGTCGATAAGATTCTGGAAGCAGAGCTTGCCGTGGAACCCAAGACAGAGACATCAGCAGACGAAGGCCCTGGCAACTCGACAAACGACCCAGTCACCAACATCTGCCAGGCAGCAGACAAACAGCTGTTCACCCTGGTGGAGTGGGCCAAGAGGATTCCTCACTTCTCAGAGCTGCCCTTAGACGACCAGGTTATTCTACTACGAGCAGGCTGGAACGAGCTCCTCATCGCGTCCTTCTCACACCGCTCTGTCACGGTGAAAGACGGAATCCTATTGGCCACGGGTCTCCACGTCCAGAGAAGTAGTGCTCATAGTGCCGGAGTGGGCTCCATCTTTGACAGagtcctgacagagttggtgtctAAGATGAAAGACATGCAGATGGACAAGACAGAGCTGGGCTGCCTACGAGCCATCGTCCTCTTCAACCCAGATGCAAAAGGCCTGTCAAATTCACCGGAGGTGGAAGGGCTGAGGGAGAAGGTCTACGCCTCGCTGGAGTCCTACACCAAAGCCAAGTACCCAGACCAACCCGGCAGGTTTGCAAAACTGTTGCTGCGTCTCCCCGCCCTGCGCTCCATAGGCCTCAAGTGTTTGGAGCACCTGTTTTTCTTCAAGCTGATAGGAGACACGCCCATAGACACCTTTCTCATGGAGATGCTCGAAGCGCCACACCAAATCACATGACACGAGTCCCACTTCCCTCTGTATATACTCCCACAATGTAATTGATATGAAGATGAAACTCGATTCGAGTTGTAAAACAGACGTATTTTGTACAAAGAACAAATGATTATTAATGTCAACaatgtgtgttttttgggggggtacgAGGAACGTCCGGTTTAAGAGAGTGGAATGgggtgtaaaaaaaatactctgttAAAAACACAATTCTAATAAAATTTTGTAAATAGATAATTTCAGGTATCCATTTTAAAAGCAACCCAAAGCAATattgaaaataatattttattaaaAGATGAATTGTATAACACTGAAAACCGTCCCTAAGTTTCTAAAAAAAATTAATTTTAGAATTCTTCCAGAATAAAATAatatacaatttgga
>XM_036978898.1
AAGGCTTGTTAGacgacacgcacatacacactcgtgcatgcgcgcacacacacacacacaaaccatgcTGGACTCTTTTGGCTCTAAGGCACGGAgtgacagggacacacacacacacaggcgacGTGCAGTGTGCCAACACAGCGCTAACAGGCATGTATGCTGCCCTAATTACAAAAAAAGGCATCCTGGGAACTTACGGACGTGcctaaagaagagaggagagagaaaagagagatccTCATTTCAGATATAGAGGGTAGGAATTCTAGAGTTAAACGAGTTGATCCGCGACTGCAATTGGTTCCTCTGGGATTGATCAGAGAATAATCTGGTTAATCCCATAAACGACGCGGGTGGActttgcctctctccctccttttcccttcgtccctccctctctttcctctatccgtccctctctgtcctctcgtctctctctcctgtcgGAGCGGGAGCAGGAGTCAGAGTACGTCCTTCTCTCCAGCTGCTAGGGAGGCTGTGTTCTTTGGCAAGGTAGTTCGTCTGtcacccctctccaccccctctggagCCATGTGGCACCCAATGGCATCAGCCTCATCTGGAAGCCCCATAAAGGAGCTGGGTTATATGCACTATTCCCAAGGGCCGATGAGCATGCCCCACTCCCATGGCCCTCCAATGGGTGGCATGGTGGGGCACCCCTCCGTCATCAGCACCTCCAGGACCCTTCCATCACCAATGAGCACCCTGGGCGCGCCCATGAACGGCCTAGCGTCGCCCTACTCCGTCATCACGTCCTCCCTGGGCGCACCCTCCACGCCAGGGATCAACTTCGGATCGCTCCACAGTCCACAGATGAGAGAGATGAACAGTGTCAGTAGTTCGGAGGACATCAAGCCTCCCCCGGGTCTCCTGAATCTAGGGGACATCAACTACAACTGCACCAGTCCTGGAGGAATGTCCAAACACGTATGTGCCATCTGTGGAGACCGATCATCAGGGAAGCACTATGGCGTGTACAGCTGTGAAGGCTGCAAAGGCTTCTTCAAGAGAACCATCCGGAAAGATCTCACCTATACGTGTCGAGACAGCAAGGAGTGCCTGATAGACAAACGACAGCGCAACCGCTGTCAATACTGTCGCTACCAGAAGTGCCTAGCCATGGGCATgaagagagaagCGGTGCAGGAGGAGAGACAGCgggggagggagcgaggggagaACGAGGTGGAGTCCACCAGTAGTTTTAATGAGGAGATGCCCGTCGATAAGATTCTGGAAGCAGAGCTTGCCGTGGAACCCAAGACAGAGACATCAGCAGACGAAGGCCCTGGCAACTCGACAAACGACCCAGTCACCAACATCTGCCAGGCAGCAGACAAACAGCTGTTCACCCTGGTGGAGTGGGCCAAGAGGATTCCTCACTTCTCAGAGCTGCCCTTAGACGACCAGGTTATTCTACTACGAGCAGGCTGGAACGAGCTCCTCATCGCGTCCTTCTCACACCGCTCTGTCACGGTGAAAGACGGAATCCTATTGGCCACGGGTCTCCACGTCCAGAGAAGTAGTGCTCATAGTGCCGGAGTGGGCTCCATCTTTGACAGagtcctgacagagttggtgtctAAGATGAAAGACATGCAGATGGACAAGACAGAGCTGGGCTGCCTACGAGCCATCGTCCTCTTCAACCCAGATGCAAAAGGCCTGTCAAATTCACCGGAGGTGGAAGGGCTGAGGGAGAAGGTCTACGCCTCGCTGGAGTCCTACACCAAAGCCAAGTACCCAGACCAACCCGGCAGGTTTGCAAAACTGTTGCTGCGTCTCCCCGCCCTGCGCTCCATAGGCCTCAAGTGTTTGGAGCACCTGTTTTTCTTCAAGCTGATAGGAGACACGCCCATAGACACCTTTCTCATGGAGATGCTCGAAGCGCCACACCAAATCACATGACACGAGTCCCACTTCCCTCTGTATATACTCCCACAATGTAATTGATATGAAGATGAAACTCGATTCGAGTTGTAAAACAGACGTATTTTGTACAAAGAACAAATGATTATTAATGTCAACaatgtgtgttttttgggggggtacgAGGAACGTCCGGTTTAAGAGAGTGGAATGgggtgtaaaaaaaatactctgttAAAAACACAATTCTAATAAAATTTTGTAAATAGATAATTTCAGGTATCCATTTTAAAAGCAACCCAAAGCAATattgaaaataatattttattaaaAGATGAATTGTATAACACTGAAAACCGTCCCTAAGTTTCTAAAAAAAATTAATTTTAGAATTCTTCCAGAATAAAATAatatacaatttgga
>XM_036978900.1
TAGGACTGGGACAGAAGGGAGCTGGGTTATATGCACTCTGAGTACCGCAGGATTGGGACAGAAGGGAGTTGGGATATATGCACTGTGAGTACCTTAGGACTGGGACAGAAGGGAGCTGGGTTATATGCACTGTGAGTACCGCAGGACTGGGACAGAAGGGAGCTGAGTTATATGCACTGTGAGTACCTTAGGACTGGGACAGAAGGGAGCTGGGTTATATGCACAGTGAGTACCGCAGGATTGGGACAGAAGGGAGCTGGGTTATATGCACTGTGAGTACCGCAGGACTGGGACAGAAGGGGACTGGGTTATATGCGCTGTAAGTACCTTAGGACTGGGACAGAAGGGAGCTGGGTTTTATGCACTGTGAGTACCTTAGGACTGGGACAGAATGGAGCTGGGTTATATGCACTGTGAGTACCGCAGGACTGGGACAGAAGGGAGCTGGGTTATATGCACTGTGAGTACCTTAGGACTGGGACAGAAGGGAGCTGGGTTATATGCACTGTGAGTACCGCAGGACTGGGACAGAAGGGAGCTGGGTTATATGCACTGTGAGTACCTTAGGACTGGGACAGAAGGGAGCTGGGTTATATGCACTGTGAGTACCTTAGGACTGGGACAGAAGGGAGCTGGGTTATATGCACTCTGAGTACCGCAGGATTGGGACAGAAGGGAGTTGGGATATATGCACTGTGAGTACCTTAGGACTGGGACAGAAGGGAGCTGGGTTATATGCACTGTGAGTACCGCAGGACTGGGACAGAAGGGAGCTGAGTTATATGCACTGTGAGTACCTTAGGACTGGGACAGAAGGGAGCTGGGTTATATGCACAGTGAGTACCGCAGGATTGGGACAGAAGGGAGCTGGGTTATATGCACTGTGAGTACCGCAGGACTGGGACAGAAGGGGACTGGGTTATATGCGCTGTAAGTACCTTAGGACTGGGACAGAAGGGAGCTGGGTTTTATGCACTGTGAGTACCTTAGGACTGGGACAGAATGGAGCTGGGTTATATGCACTGTGAGTACCGCAGGACTGGGACAGAAGGGAGCTGGGTTATATGCACTGTGAGTACCTTAGGACTGGGACAGAAGGGAGCTGGGTTATATGCACTATTCCCAAGGGCCGATGAGCATGCCCCACTCCCATGGCCCTCCAATGGGTGGCATGGTGGGGCACCCCTCCGTCATCAGCACCTCCAGGACCCTTCCATCACCAATGAGCACCCTGGGCGCGCCCATGAACGGCCTAGCGTCGCCCTACTCCGTCATCACGTCCTCCCTGGGCGCACCCTCCACGCCAGGGATCAACTTCGGATCGCTCCACAGTCCACAGATGAGAGAGATGAACAGTGTCAGTAGTTCGGAGGACATCAAGCCTCCCCCGGGTCTCCTGAATCTAGGGGACATCAACTACAACTGCACCAGTCCTGGAGGAATGTCCAAACACGTATGTGCCATCTGTGGAGACCGATCATCAGGGAAGCACTATGGCGTGTACAGCTGTGAAGGCTGCAAAGGCTTCTTCAAGAGAACCATCCGGAAAGATCTCACCTATACGTGTCGAGACAGCAAGGAGTGCCTGATAGACAAACGACAGCGCAACCGCTGTCAATACTGTCGCTACCAGAAGTGCCTAGCCATGGGCATgaagagagaaggtgtgtCGGTGCAGGAGGAGAGACAGCgggggagggagcgaggggagaACGAGGTGGAGTCCACCAGTAGTTTTAATGAGGAGATGCCCGTCGATAAGATTCTGGAAGCAGAGCTTGCCGTGGAACCCAAGACAGAGACATCAGCAGACGAAGGCCCTGGCAACTCGACAAACGACCCAGTCACCAACATCTGCCAGGCAGCAGACAAACAGCTGTTCACCCTGGTGGAGTGGGCCAAGAGGATTCCTCACTTCTCAGAGCTGCCCTTAGACGACCAGGTTATTCTACTACGAGCAGGCTGGAACGAGCTCCTCATCGCGTCCTTCTCACACCGCTCTGTCACGGTGAAAGACGGAATCCTATTGGCCACGGGTCTCCACGTCCAGAGAAGTAGTGCTCATAGTGCCGGAGTGGGCTCCATCTTTGACAGagtcctgacagagttggtgtctAAGATGAAAGACATGCAGATGGACAAGACAGAGCTGGGCTGCCTACGAGCCATCGTCCTCTTCAACCCAGATGCAAAAGGCCTGTCAAATTCACCGGAGGTGGAAGGGCTGAGGGAGAAGGTCTACGCCTCGCTGGAGTCCTACACCAAAGCCAAGTACCCAGACCAACCCGGCAGGTTTGCAAAACTGTTGCTGCGTCTCCCCGCCCTGCGCTCCATAGGCCTCAAGTGTTTGGAGCACCTGTTTTTCTTCAAGCTGATAGGAGACACGCCCATAGACACCTTTCTCATGGAGATGCTCGAAGCGCCACACCAAATCACATGACACGAGTCCCACTTCCCTCTGTATATACTCCCACAATGTAATTGATATGAAGATGAAACTCGATTCGAGTTGTAAAACAGACGTATTTTGTACAAAGAACAAATGATTATTAATGTCAACaatgtgtgttttttgggggggtacgAGGAACGTCCGGTTTAAGAGAGTGGAATGgggtgtaaaaaaaatactctgttAAAAACACAATTCTAATAAAATTTTGTAAATAGATAATTTCAGGTATCCATTTTAAAAGCAACCCAAAGCAATattgaaaataatattttattaaaAGATGAATTGTATAACACTGAAAACCGTCCCTAAGTTTCTAAAAAAAATTAATTTTAGAATTCTTCCAGAATAAAATAatatacaatttgga

Function

NR:

description
PREDICTED: retinoic acid receptor RXR-gamma-B-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08526 RXRG, NR2B3; retinoid X receptor gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978899.1 False 2023 mRNA 0.50 9 93940018 94018526
XM_036978897.1 False 2348 mRNA 0.51 9 93959211 94018526
XM_036978898.1 False 2320 mRNA 0.51 9 93959233 94018526
XM_036978900.1 True 2825 mRNA 0.51 9 93960096 94018526
Loading

Neighbor

gene id symbol gene type direction distance location
olfml2ba LOC106560501 coding upstream 142712 93781347 ~ 93797306 (+)
LOC110524846 LOC106560502 coding upstream 159077 93722660 ~ 93780941 (+)
LOC118964735 NA coding upstream 311806 93625432 ~ 93628212 (+)
enc3 LOC106560599 coding upstream 672240 93251629 ~ 93267778 (+)
LOC110524836 rpl36 coding upstream 715012 93221830 ~ 93225091 (+)
lmx1a LOC106592664 coding downstream 1049 94019575 ~ 94063160 (+)
si:dkey-51e6.1 LOC106560654 coding downstream 113145 94131671 ~ 94133528 (+)
c5h1orf112 cssa10h1orf112 coding downstream 126918 94145444 ~ 94164607 (+)
LOC118964736 NA coding downstream 162738 94181264 ~ 94185109 (+)
LOC110523054 LOC106592820 coding downstream 173121 94191647 ~ 94201341 (+)
G457928 NA non-coding upstream 1778 93938024 ~ 93938240 (+)
G457926 NA non-coding upstream 2603 93937215 ~ 93937415 (+)
G457188 NA non-coding upstream 26627 93907932 ~ 93913391 (+)
G457161 NA non-coding upstream 76186 93861654 ~ 93863832 (+)
G457142 NA non-coding upstream 117049 93822611 ~ 93822969 (+)
G457975 NA non-coding downstream 30567 94049093 ~ 94049316 (+)
G457978 NA non-coding downstream 45908 94064434 ~ 94064642 (+)
G457984 NA non-coding downstream 48381 94066907 ~ 94073194 (+)
G457986 LOC106560647 non-coding downstream 55331 94073857 ~ 94078149 (+)
G457987 NA non-coding downstream 91367 94109893 ~ 94112564 (+)
G456927 NA other upstream 590399 93348794 ~ 93349619 (+)
G456731 cp other upstream 898556 93002003 ~ 93041462 (+)
G456139 LOC106560602 other upstream 1939260 91943154 ~ 92000758 (+)
G458015 NA other downstream 117392 94135918 ~ 94136269 (+)
G459346 hdlbp other downstream 1684454 95696263 ~ 95706519 (+)
G459843 NA other downstream 2228760 96247286 ~ 96247962 (+)
ryk LOC106560633 other downstream 2456548 96474920 ~ 96619822 (+)
G460428 NA other downstream 2903806 96922332 ~ 96922812 (+)

Expression

rxrgb(LOC106560629) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 20.
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rxrgb(LOC106560629) Expression in each Bioproject

Bar chart with 21 bars.
rxrgb(LOC106560629) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
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Co-expression Network