lmx1a (LOC106592664)


Basic Information

Item Value
gene id lmx1a
gene name LOC106592664
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 94019575 ~ 94063160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978901.1
gcgtcctccgaaacacaacccaacccagctgcactgcttcttaacacagtgcgcatccaacccagaagccagccgcaccaatgtgttggaggaaacactgtgcacctggcaacctgcttagcgtgcactgcgcccggcccccCACAGGAGTCGCTTAGTgtcgttatcctcgcaaggggaGGATGCTGGAATATTTAAATCTCTTTGAGAGATTTAtttaacaaaatctctttctctgagcaattctATTAGTgtaaaagtatatatatttagcATATAATAATATAGCTTAGTATTTATtttattctgtttgttttttttgctcatctttatcaagggtacaAATGATTTTGGAACTGACTATGTGGTTTTACATCAATCAGTGTAGGTTTACCCAGGTACGGCCATCtgtatgtagtacactactgcGTCTGAATGTCTTGTTTCCTTCAATGAGCCTCTACAGGCCGTGAGttgatctactgtatgtagccctaCCGGTAGTTCTCAGCGCTAGTGGGGCATTTAAGCCCTGAACAGCGCCTGACAGGCAGCCCTGTCTTCCAGGATGCACTCAGCCCCAAAGACCAGAGCCAATCTCATGCAATGAACGACAAGCTGTCGAGCCACATTCAAACACATTCAGACAGAAAGCTTAAGCCTAGAGGGGAAAAGGTGAATTGATAGATAAATGCTCAATAACGAGGAGCAGCACTAAAGAAGAGGAATTGGAAACGCTCGAGTCGGCTGGGAAAgttttcttctgtcttcttcATCCAACTCGACCAGGGCATCAATCCAGAAGAGATAAGAATGGAATATATCAGAAAATAGATTCTAAAATATCGACATAAACAGAAGAACATCCTGAACTTTGTTGGATGAAACTATGGGGGAAGGATATCCTGCATCTGTCCTTGATTTGACACCAACCGTGTGTGTGGGATGCCACCGCCTCATCCATGACAAGTACCTGCTTAGCGTCATCGATGGCCTATGGCACGAGCAATGCGTCCGGTGCGTGGCGTGTGGCGATCCGCTCCAGAACACGTGCTTTCTCCGGGACCAGAAACTTTACTGCAAGCGCGACTATGCCAAtctgttTGCAGTGAGGTGTGGTGGCTGTGCAGAGGCCATCTCCCCTGCAGAGCTAGTGATGCATGCTGGAGCTGCAGTGTTCCACCTGGCCTGTTTCAGCTGCAGTATGTGTTCCTGTCTTCTGCGGCCTGGAGACTGCTGTGTCCTCAGGGAAGGACGGTTGCTCTGTGCTAGAGACTACAACCAGGAAGTGGACAGACCCACCTCATCAGACTCAGGTGAaagtgatgatgaggaggaggaggaggaggaggagaaaggggatgAGGGCAGTGTGAAGGCTTCAGGCAGACGTGGCGGTGAAGCAGACGACCCTGAACACAAACGACCCAAACGTCCACGCACTATTCTGACCACCCACCAGAGACGGGCCTTCAAAGCATCCTTCGAAGTCTCCTCCAAGCCCTGCCGGAAGGTAAGGGAGACCTTGGCAGCGGAGACCGGTCTGAGCGTGAGAGTCGTGCAGGTCTGGTTCCAAAACCAAAGAGCCAAGATGAAGAAACTGGCCAgaaggcagcaacagcagcagcaacaagaGCAGCAAGAACAGCCAGCACATCACAGTGCGCCCTCCTGTGGcggtctgacctctgacctgaacCCTCTGAGCTTGTACCCCCACCCCCAACACAACCACCCCAATCTCCAGCAGATGCAGGCCCTGGCCCAGGCCACCTCCTTGGGGGTGCAGGAATATGACATGGAACCCTTTAGACAGGGACTCACCCCTCCACAGATGCCCGGGGACCACATGCACCCCTACGgctGCAAGGCCCTTTATGTGGAGATGGATGGGAACCCTCTCTGTAACCTAGGCGACGGAGACTGCCTGTCTTTGTGTGACTCATCCCTGGCCACGCCTAtcgaccacctttactccatgcAAGACTCCTACTTCACCTGAGTCTGGAGGCTCAGATCCCTCACACCCTCTCACCTGAGTCTGGAGGCTCAGATCCCTCACACCCTCTCACCTGAGTCTGGAGGCTCAGATCCCTCACACCCTCTCACCTGAGTCTGGAGGCTCAGATCCCTCACACCCTCTCACCTGAGTCTGGAGGCTCAGATCCCTCACACCCTCTCACCTGAGTCTGGAGGCTCAGATCCCTCACACCCTCTCACCTGAGTCTGGAGGCTCAGATCCCTCACACCCTCTCACCTGAGTCTGGAGGCTCAGATCCCTCACACCCTCTCACCTGAGTCTGGAGGCTCAGATCCCTCACACCCTCTCACCTGAGTCTGGAGGCTCAGATCCCTCACACCCTCTCACCTGAGTCTGGAGGCTCAGATCCCTCACACCCTCCGTCCAGACCCTCCCCTTCACGGGCACAGCGACCCACACTGTACAGCTGAGGACGGACTCAATTCCAAGTGGACCCTCTGTAcaactgtgtgtttttgtgtgaagTTCAGAAAAGAATGTATTATATAACTGTAAATAACTATCTTggctattatttgtatttattacattttgtgtgtgtgatcTACAGTATTTGTGCCCAAAATGAATAACCTGTTAATAAATGGATACAGTAATAACGTTTATTTC

Function

NR:

description
PREDICTED: LIM homeobox transcription factor 1-alpha

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978901.1 True 2650 mRNA 0.51 10 94019575 94063160
Loading

Neighbor

gene id symbol gene type direction distance location
rxrgb LOC106560629 coding upstream 1049 93940018 ~ 94018526 (+)
olfml2ba LOC106560501 coding upstream 222269 93781347 ~ 93797306 (+)
LOC110524846 LOC106560502 coding upstream 238634 93722660 ~ 93780941 (+)
LOC118964735 NA coding upstream 391363 93625432 ~ 93628212 (+)
enc3 LOC106560599 coding upstream 751797 93251629 ~ 93267778 (+)
si:dkey-51e6.1 LOC106560654 coding downstream 68511 94131671 ~ 94133528 (+)
c5h1orf112 cssa10h1orf112 coding downstream 82284 94145444 ~ 94164607 (+)
LOC118964736 NA coding downstream 118104 94181264 ~ 94185109 (+)
LOC110523054 LOC106592820 coding downstream 128487 94191647 ~ 94201341 (+)
LOC110524884 kat3 coding downstream 157878 94221038 ~ 94235488 (+)
G457959 NA non-coding upstream 13200 94005026 ~ 94006375 (+)
G457949 NA non-coding upstream 37236 93981848 ~ 93982339 (+)
G457928 NA non-coding upstream 81335 93938024 ~ 93938240 (+)
G457926 NA non-coding upstream 82160 93937215 ~ 93937415 (+)
G457188 NA non-coding upstream 106184 93907932 ~ 93913391 (+)
G457978 NA non-coding downstream 1274 94064434 ~ 94064642 (+)
G457984 NA non-coding downstream 3747 94066907 ~ 94073194 (+)
G457986 LOC106560647 non-coding downstream 10697 94073857 ~ 94078149 (+)
G457987 NA non-coding downstream 46733 94109893 ~ 94112564 (+)
G458030 NA non-coding downstream 91597 94154757 ~ 94155485 (+)
G456927 NA other upstream 669956 93348794 ~ 93349619 (+)
LOC110524836 rpl36 other upstream 794484 93221830 ~ 93225091 (+)
G456731 cp other upstream 978113 93002003 ~ 93041462 (+)
G456139 LOC106560602 other upstream 2018817 91943154 ~ 92000758 (+)
G458015 NA other downstream 72758 94135918 ~ 94136269 (+)
G459346 hdlbp other downstream 1639820 95696263 ~ 95706519 (+)
G459843 NA other downstream 2184126 96247286 ~ 96247962 (+)
ryk LOC106560633 other downstream 2411914 96474920 ~ 96619822 (+)
G460428 NA other downstream 2859172 96922332 ~ 96922812 (+)

Expression

lmx1a(LOC106592664) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
End of interactive chart.

lmx1a(LOC106592664) Expression in each Bioproject

Bar chart with 21 bars.
lmx1a(LOC106592664) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network