LOC110524880 (LOC106592820)


Basic Information

Item Value
gene id LOC110524880
gene name LOC106592820
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 94103599 ~ 94115079 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978882.1
CGCCCAGGCAGTGTCATAACGATGAATTCCGGTCTTTGGCCGTTGTTGAAGTGTTGGttggtgtatatatatgtgtgcaCAGAGTACCAGAGAGCAGTATCATTTCATCCACTGGATCAGACTAGAAACATATCCTTTGGAGATTTACCTGCAAAAGAGCATCACATTTTAATCTTACAATGGACTTCTGCTCTGCATCACAGCAAGCCAGAAGCCCCAGCTCATGGATCACCCTCTTCCTCCTGTACACAGTTGTCACCATGTGCACTAGAGTAGAGGGCTGGTCCTACCATCACTCCAACAAAACTATGAACTGGGACACTGCTAGAAAGTGGTGCACGGAGCACTACACTGACATGGTGGCAATCCAGAACCGTGGAGAGATCTCCCACCTTAACAGCATCCTGCCCAGGCAGGCCAACTATTACTGGATAGGGATCCGTAAGGTGGACGACGTGTGGACCTGGGTGGGGACCAATAAGATCCTGACTAAAGAGGCAGAGAACTGGGCAGACGGGGAACCCAACAACGGGGGGAACAATGAGGACTGTGTGGAGATGTACAtcaagagagagaaggacacaggGAAGTGGAACGACGAGTCTTGTATGAAGAAGAAGACGGCTCTGTGCTTCACAGCCTCGTGTCAGAGCGACTCATGTTACCATGGAGAGTGTGTGGAGACCATCAACAGCCACCGCTGTAAATGCTCTGAGGGCTTCTACGGAGAGCAGTGTGAACACGTTGTTGAATGTAAGATGGAGGAGGTCACTGTCCCTGCTAATGCCAGTGTCAGTTGCTCTCACCCCAATGGGAATTTCTCCTTTGACTCGACGTGTCAGTATTCCTGTGAAGAGGGGTACCGGCTGAGCAGCTCCGGGCCTATGAGATGCACAGCCTCAGAATCATGGTCAGAACAGCCTCCCACGTGTGAATTGGTCTTATGCAGTGAGCTGTATGAACCTGGGAAGGGTTCCATGGCCTGCTCCCATCCCCTGGGCTCCTTCAGCTACCTGTCCACCTGTACCTTTACCTGTGAGGAGGGCTATGAGAGGCTGGCCTCCAGCTCTACTACCCTGCAGTGTGGAGCCTCGGGACAGTGGAACGACTCACAGCCGCAGTGTATTGCTGTAAGCTGCCCTACCCTCCAGCAGCCACAGGATGGCGCTATCAGCTGTGGAGAAGACTTCACCTATGGAAGCAGCTGTAACTTTAGCTGCTCTGAGGGTTATATCCTCAAGGGGGCGATCACACTGACCTGCACATCAGCTGCTGAGTGGAGTGAGGAGATACCACACTGTGAAGTGGTCTTATGCAGTGAGCTGTATGAACCTGGGAAGGGTTCCATGGCCTGCTCCCATCCCCTGGGCTCCTTCAGCTACCTGTCCACCTGTACCTTTACCTGTGAGGAGGGCTATGAGAGGCTGGCCTCCAGCTCTACTACCCTGCAGTGTGGAGCCTCGGGACAGTGGAACGACTCACAGCCGCAGTGTATTGCTGTAAGCTGCCCTACCCTCCAGCAGCCACAGGATGGCGCTATCAGCTGTGGAGAAGACTTCACCTATGGAAGCAGCTGTAACTTTAGCTGCTCTGAGGGTTATATCCTCAAGGGGGCGATCACACTGACCTGCACATCAGCTGCTGAGTGGAGTGAGGAGATACCACACTGTGAAGTGGTCTTATGCAGTGAGCTGTATGAACCTGGGAAGGGTTCCATGGCCTGCTCCCATCCCCTGGGCTCCTTCAGCTACCTGTCCACCTGTACCTTTACCTGTGAGGAGGGCTATGAGAGGCTGGCCTCCAGCTCTACTACCCTGCAGTGTGGAGCCTCGGGACAGTGGAACGACTCACAGCCGCAGTGTATTGCTGTAAGCTGCCCTACCCTCCAGCAGCCACAGGATGGCGCTATCAGCTGTGGAGAAGACTTCACCTATGGAAGCAGCTGTAACTTTAGCTGTTCTGAGGGTTATATCCTCAAGGGGGCGATCACACTGACCTGCACATCAGCTGCTGAGTGGAGTGAGGAGATACCACACTGTGAAGTGGTCTTATGCAGTGAGCTGTATGAACCTGGGAAAGGTTCCATGGCCTGCTCCCATCCCCTGGGCTCCTTCAGCTACCTGTCCACCTGTACCTTTACCTGTGAGGAGGGCTATGAGAGGCTGGCCTCCAGCTCTACTACCCTGCAGTGTGGAGCCTCGGGACAGTGGAACGACTCACAGCCGCAGTGTATTGCTGTAAGCTGCCCTACCCTCCAGCAGCCACAGGATGGCGCTATCAGCTGTGGAGAAGACTTCACCTATGGAAGCAGCTGTAACTTTAGCTGCTCTGAGGGTTATCTCCTCAAGGGGGCGATCACGCTGACCTGCACATCAGCTGCTGAGTGGAGTGAGGAGATACCACACTGTGAAGTGGTCTTATGCAGTGAGCTGTATGAACCTGGGAAGGGTTCCATGGCCTGCTCCCATCCCCTGGGCTCCTTCAGCTACCTGTCCACCTGTACCTTTACCTGTGAGGAGGGCTATGAGAGGCTGGCCTCCAGCTCTGCTACCCTGCAGTGTGGAGCCTCGGGACAGTGGAACGACTCACAGCCgcagtgtgttgCTGTAAGCTGCCCTACCCTCCAGCAGCCACAGGATGGCGCTATCAGCTGTGGAGAAGACTTCACCTTTGGAAGCAGCTGTAACTTTAACTGCTCTGAGGGTTATATCCTCAAGGGGGCGATCACAGTGACCTGCACATCAGCTGCTGAGTGGAGTGAGGAGATACCACACTGTGAAGCTGTCCAGTGCCCCTCTCCTGTGGTTCCTCTGGGGGGTCAGGTCAGCTGTGAGGCCCCCTCACATCCCTGGGGCTCTGTCTGCAACTTCAGCTGTGATGAGGGCTACGATCACCAGGGGGCCCCAAACATGCAGTGTTCACGGTCAGGGGAGTGGAGCGCTGAAACACCTACCTGCACAGCCACACCTGAGCCTCCATTGAACCCCACTATCCTAGGCCTGGCAGCAGGGGGCGCTGTGTCATTATCTGGCCTGTCTCTGGCTGCATGGCTCCTCAAACGAATCAGACAGAAAGCTAACAAGTTTGATCTGAACAGCACCTCAGACATTGAGGAACCTTTACAGACCTACAGGAACAGCATCGACAGCCTGATATAGAGACCAACAACAATAACAGCAGGAACAACAGCAGGAACAACAGCAGGAACAACAGCAGGAACAACAGCAGGAACAACAGGCTGGCTCTGTTTTCAAAGAAGATCTGCTGGTCACACCTGGATCACAGTTCCTCAGTATTGTAATGTAGTAGGTTAGATAGCCTTGAATCGTCTGACTGGGAGAGAGGTGCTACGTTGAGTATACAGAATCATCTGTTCTCATGATGGTCCtacagaaaatgtattttttctccCAAAGGGAGTTTTGTATTGAACAAATTGTTCACCACTGGCTGGTATATGACCACAAGTCGACACATTTCTTATGATACTGATTTTGACAGCTATTTTATACAAACTACAGAAAGTTATATATTGTATTCCCCTGTATAATTATTTGTATTatcataaatatatttttatgatTTTACAGAACTGTGAAATCAATGCCTTTCAGTATTtaagatgtatttatttttaaaccacAGTCTGTGTGTTACAGAATTACATTTGATGTTGAAAAAGTGTCTTTTTAAATATAATAAACATTTCAAACATTGTCAA

Function

NR:

description
E-selectin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978882.1 True 3721 mRNA 0.51 17 94103599 94115079

Neighbor

gene id symbol gene type direction distance location
LOC110524878 LOC106560653 coding downstream 4370 94094979 ~ 94099229 (-)
LOC110524879 LOC106560647 coding downstream 9126 94072988 ~ 94094473 (-)
atf6 atf6 coding downstream 169351 93809803 ~ 93934248 (-)
si:dkeyp-82a1.6 LOC106560500 coding downstream 393662 93705716 ~ 93709937 (-)
LOC110524842 NA coding downstream 401054 93652863 ~ 93702545 (-)
scyl3 scyl3 coding upstream 50159 94165238 ~ 94174003 (-)
LOC110524883 LOC106560651 coding upstream 97397 94212476 ~ 94221154 (-)
zgc:153916 LOC106560658 coding upstream 120383 94235462 ~ 94286184 (-)
lmo4b lmo4 coding upstream 713027 94828106 ~ 94863090 (-)
hs2st1b LOC106560611 coding upstream 866345 94978892 ~ 95053916 (-)
G458160 NA non-coding downstream 99501 94002456 ~ 94004098 (-)
G458159 NA non-coding downstream 102506 94000542 ~ 94001093 (-)
G458136 NA non-coding downstream 143240 93959439 ~ 93960359 (-)
G457925 NA non-coding downstream 167160 93936211 ~ 93936439 (-)
G457918 NA non-coding downstream 194247 93907441 ~ 93909352 (-)
G458221 NA non-coding upstream 3022 94118101 ~ 94134771 (-)
G458219 NA non-coding upstream 17928 94133007 ~ 94133532 (-)
G458231 NA non-coding upstream 20886 94135965 ~ 94136230 (-)
G458258 NA non-coding upstream 66431 94181510 ~ 94199088 (-)
G458260 NA non-coding upstream 69465 94184544 ~ 94201958 (-)
G457909 NA other downstream 239985 93860846 ~ 93863614 (-)
G457742 NA other downstream 640520 93462352 ~ 93463079 (-)
G457740 NA other downstream 661186 93441900 ~ 93442413 (-)
G457595 NA other downstream 1083319 93018394 ~ 93020280 (-)
G457537 NA other downstream 1136607 92950678 ~ 92966992 (-)
G459282 NA other upstream 1443611 95558690 ~ 95559210 (-)
G459323 NA other upstream 1487344 95602423 ~ 95602927 (-)
G459813 NA other upstream 2072389 96187468 ~ 96187983 (-)
G460020 NA other upstream 2345828 96460907 ~ 96464598 (-)
G460331 NA other upstream 2665764 96780843 ~ 96782021 (-)

Expression


Co-expression Network