LOC110524856 (cldn18)


Basic Information

Item Value
gene id LOC110524856
gene name cldn18
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 95111855 ~ 95124924 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604809.2
AGCCTGCCAGTATCCGATTCACTTCAAACACAGCGAGTCAAAAAGCCCCGTCTCGGTGTTGGCACTGTGGCATTAGAAACAATCAGAAGCTGAGAGACTCTGCAGTAGCTAAGgttccttctttttttttgttatttttttgccTACCGAGAGAAGAAAGAAGAAGGTTGTGATAGCGTTGAACGTTAGCTtcaccagagagacagagaggtaggagTTGGTTTCCCAccgagacagaagagagagagagagagaggcattctGCATCATGGCGGCGACCCTGTGCCAGGTGATGGGCTTTGTGCTGAGCCTACTGGGTGTGGGTGGGATTATAGCCGCCACTGGGATGGACCAGTGGGCAACGGAGGACCTGTACGACAACCCTGTGACCGCCATCTTCTCCTACTCAGGACTCTGGAGATCCTGTGTCCGGCAGAGCTCCGGATTCACAGAGTGCCGACCCTACTTCACCATCCTGGGGCTACCAGCTATGCTCCAAGCTGTGCGGGCCCTGATGATAGTGGGGATGGTCCTGGGAGCCATCGGTTGTCTGGTCGCCATCTTTGCCCTCAAGTGTCTGAAGATGGGGAACATGGAGGACAGCGTCAAGGCTACCATGACGTTGACCTCTGGGGTCATGTTTCTGCTCGGAGGTGTTTGTGGCATTGCTGGAGTGTCGGTCTTTGCCAACCTAATCGTTAGCAGCTTCCGGTTCACCACCTATGCAGATGGtggatatggaggaggaggagtactgGGGGGAGGATTAGGAGGAATGGGAGGATCTCTCACTCCCAGGTACACCTTTGGCTCCGCCCTCTTTGTGGGGTGGATAGGCGGAGCCGTGCTGGTCGTGGGAGGGGTTATGATGTGCATGGCCTGTCGGGGGATGGTTCCACCAGAGGAGAAGAGACCAAATTATGGGATGGCCTACAAGCCTGCTTCCCAACACACAACAGTTTACAAAGCGAACACCAGACCCAGAACGGCCTATGACGATTCTTTCAGAGCCCAGAGTATGGATGGAAGACAATCCAACCAGCAATATGTGTGAAGAATATAATATTATGTACTGTTAGGTTTTAGAGGTTCTCTGAAAACGGAGCAAAACTGTTTTAATGTATCGATGCCAATCTCATGTAGCTCTGAAGGGCTTAGAAGATTTCATAGAGGGTTGCTATAGAGGTTTCATAGAGGGTTGCAATAGAGGTTTCATCGAGGGTTGCTATAGAGGGTAACTTTGAAGGAAGTACTTATTCAGGTTTGATTCATTATTTTTGTACTTGGAGCTCTCttatatttctgtgtttttgtTATTCTGCATTTAAGGGGACAATATTGTAATTTTCTAATGCATCTATATTAAAAGAATCACATTTCCAGAA

Function

symbol description
cldn18 Predicted to enable structural molecule activity. Predicted to be located in bicellular tight junction and plasma membrane. Predicted to be integral component of membrane. Is expressed in kidney. Orthologous to human CLDN18 (claudin 18).

NR:

description
claudin-18

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604809.2 True 1385 mRNA 0.49 5 95111855 95124924

Neighbor

gene id symbol gene type direction distance location
hs2st1b LOC106560611 coding downstream 57939 94978892 ~ 95053916 (-)
lmo4b lmo4 coding downstream 248765 94828106 ~ 94863090 (-)
zgc:153916 LOC106560658 coding downstream 825671 94235462 ~ 94286184 (-)
LOC110524883 LOC106560651 coding downstream 890701 94212476 ~ 94221154 (-)
scyl3 scyl3 coding downstream 937852 94165238 ~ 94174003 (-)
sox14 sox14 coding upstream 220224 95345148 ~ 95349127 (-)
trnap-ugg-7 NA coding upstream 572237 95697161 ~ 95697232 (-)
hdlbpa hdlbp coding upstream 574512 95699436 ~ 95722598 (-)
dtymk dtymk coding upstream 788950 95913874 ~ 95922379 (-)
zgc:103559 LOC106560661 coding upstream 807062 95931986 ~ 95957022 (-)
G458917 NA non-coding downstream 125102 94986044 ~ 94986753 (-)
G458846 NA non-coding downstream 147433 94964177 ~ 94964422 (-)
G458845 NA non-coding downstream 147687 94963958 ~ 94964168 (-)
G458844 NA non-coding downstream 147992 94963593 ~ 94963863 (-)
G459003 NA non-coding upstream 1990 95126914 ~ 95127433 (-)
G459004 NA non-coding upstream 3379 95128303 ~ 95128753 (-)
G459028 NA non-coding upstream 26122 95151046 ~ 95186324 (-)
G459039 NA non-coding upstream 64095 95189019 ~ 95259610 (-)
G459040 NA non-coding upstream 112170 95237094 ~ 95244848 (-)
G457909 NA other downstream 1248241 93860846 ~ 93863614 (-)
G457742 NA other downstream 1648776 93462352 ~ 93463079 (-)
G457740 NA other downstream 1669442 93441900 ~ 93442413 (-)
G457595 NA other downstream 2091575 93018394 ~ 93020280 (-)
G457537 NA other downstream 2144863 92950678 ~ 92966992 (-)
G459282 NA other upstream 433766 95558690 ~ 95559210 (-)
G459323 NA other upstream 477499 95602423 ~ 95602927 (-)
G459813 NA other upstream 1062544 96187468 ~ 96187983 (-)
G460020 NA other upstream 1335983 96460907 ~ 96464598 (-)
G460331 NA other upstream 1655919 96780843 ~ 96782021 (-)

Expression


Co-expression Network