boka (LOC106560644)


Basic Information

Item Value
gene id boka
gene name LOC106560644
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 95878364 ~ 95890053 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604830.2
TCCAAACGGTCCATAGAAGGAAACTTTGCTCGAGTGTGGGGGCGCGCTTCTCAGCTACCAACCCTGGCTGTGCCAAACGGTATAAATCAATGGTCAAGAAAGCGTTTGGAGTATCGGTAAGGAACTGACGCCATGAAGACTTCAcagcagtgtttttttttttaaaacagagaATGAACTGTTTTAATATATACCTAATGGCCAAGTGGTAGATGTGGATATCCTGTAGCCTATAATCACGACGGCGCAGACCGTGCGCCTGTAGACTACAGGACTGGACGCGAAAGGCAGATTCTCTTCGAAACGCCCTCAGTCCGAGGGAGGAGAGTAAGAGAAGTAGCATTCTGGTGACAAAGAGGACCATACACGGCGACAGAGGTTGAAGATTGAGGTGGATCAGAGCCAGAGCCAGCGCCAGGCGGGTTGTTTGTGATTAACTGCTGCTTGGGGACTCTGGGGTATGGAGATGTTGCGTCGCTCCTCCGTATTCGCGGCTGAAGTGATGGAAGTATTCGACCGCTCTCCCACAGACAAGGAGCTGGTGTCACAGGCGAAGGCTCTATGCAGGGACTACATCCATTCCAGGCTGAACCGAACCGGGATAGGGTGGTCCAAACCCGAGCATCAGCTGTCAGCATCTGGTGGGATGCTTGGAGAGGTATCCTCTGTCCTCATGTGGTTAGGTGATGAGTTGGAGTACCTGCGGCCCAACATCTACCGTAACGTAGCTCGTCAGCTGAACATCACCGTTGCGTCTGAGAGCGTGGTGTCTGATGCCTTCCTGGCTGTGGCTGCAGAGATCTTCTCCACCGGTATAACGTGGGGGAAGGTGGTGTCCCTGTATGCGGTAGCTGGTGCCCTGGCAGTGGACTGCGTGAGGCATGGTCACCCAGCAATGGTCCACACCATTGTAGACTGCATGGGGGAGTTTGTCCGCAAGAGCCTGGTCTCCTggttgaagaggagaggaggatggGCTGATATCACAAAGTGCGTGGTGAACACAGACCCCAGCTTCCGCTCCCATTGGTTGATGTCTGCTGCCTGCGCCTGTGGACATTACCTGAAGGCCATGGTGTTTTACCTGCTCCGGGACAAGTGACAACGGAGGAGGAAGGTCACAGACACACGACGAGCATTCTGCCCTATACGAACACAGCCACCCCCTATCCATCAGtggagtacaggacaggacaagcaAGCCCGGTCCCAGATCATTTTTTGCTCTTGACAACTCCAGTGatgtcattgtcaagccaaaccaTGTTTGTcatgacaatgagtgacaaggagttgcacaaacagactggtactcGGGGCCGGCCAGCCagcctccctccccttcctctcgccctctgtccctctgtctgcgCGGCAGCCATCACTGCTTTAGCGTCtagatatgttgttgttgtttacacctGCAGAAGTTTGCTCCAACACTGCCACAGGCGAGCACCTTGGGACTTCACAAACGCACTGGCCTGGAGCATCAATGTGAATTAGCCTTGTCCGCTTCGAACACACTATAGGGTATTTATTATTTACCTTGACGGCAATATTTTGTGACGTGCTGTACAGATCCTCCAGCTGGATTGTGAGGTAGTAGTCTAGTCATATAGATCTATAGAATGGAATGCCACCCATCAACCATTGACTTGAATGCGAATGTCCTTTCTACTCATTCTATTTCTGTATTTGTTTTTCTTCAGTTACATCCGAGAGTCACTTTCCTTGCTTTAATtagtttttattttaataaaatgtatttaactaggcaagtcagcttaAGGAcattttcttatttacaatgacggcctaccccggacaacgctgggccaattgtgcgccgccctataggacttccaatcacggccggttgtgatacagcccggattcgaaccagggtgtctgtagtgacgcctcttgcactgagatgctgtgccacCCAGGAGCTTTATGCTTGCATTACTCAATGGCAAATATTCTATTCAAATCAATGGAATATTTCTATACATTTTGAGTTTCTGTTCTACACCTGTTCGAGCAAAGGGGATATGGGCCCAGACAGTGTGCCTGTAAATAAACCAGTATTTTCATCCAGGGGGTCATACTCTCCCTGGTGGCTGAAAACAAGAATGACCAGAACCCCTATTTTGATGACGATTTGAAAAGGAACATTTTGTGAAATTATTCGGAATTCCTCAGTTTGGATGGAAATATCGTTTAGATTCTAAGGTTTTGTCTGCATGATCCACGTAGTTGATGAGTGTGTGAATTTACACAATCTGGGTGAATAAGTGTGTCTTTTTGTAAAATATTGTGTAATTATGGATCACTCTTATCACCTGAAACTTGAATCCCATTCAGACATTTTTGTCTGTTTTCTACAAATGTATTTGTATTCTGTGAATAACTACACAGTAGCTTACACATACACTGTATTTGGCATGCAGCACTGAGTGTCTTCAgaaataaaatgttttacatttcaa

Function

NR:

description
bcl-2-related ovarian killer protein

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand biological_process
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K02561 BOK; Bcl-2-related ovarian killer protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604830.2 True 2495 mRNA 0.48 5 95878364 95890053
Loading

Neighbor

gene id symbol gene type direction distance location
farp2 farp2 coding upstream 4998 95776948 ~ 95873366 (+)
LOC110524871 LOC106560642 coding upstream 101568 95735328 ~ 95776796 (+)
LOC118964737 NA coding upstream 231254 95638743 ~ 95647110 (+)
dzip1l LOC106560612 coding upstream 768411 95079374 ~ 95109953 (+)
LOC110524884 kat3 coding upstream 1642876 94221038 ~ 94235488 (+)
atg4b atg4b coding downstream 4890 95894943 ~ 95913833 (+)
kif1aa kif1a coding downstream 76120 95966173 ~ 96115469 (+)
LOC110524877 NA coding downstream 230461 96120514 ~ 96126851 (+)
scly scly coding downstream 238342 96128395 ~ 96149227 (+)
espnla espnl coding downstream 264665 96154718 ~ 96202354 (+)
G459422 NA non-coding upstream 22970 95854821 ~ 95855394 (+)
G459386 NA non-coding upstream 45094 95830273 ~ 95833270 (+)
G459411 NA non-coding upstream 76297 95801503 ~ 95802067 (+)
G459399 NA non-coding upstream 105805 95770942 ~ 95772559 (+)
G459392 NA non-coding upstream 134037 95744011 ~ 95744327 (+)
G459450 NA non-coding downstream 66139 95956192 ~ 95956985 (+)
G459452 NA non-coding downstream 68494 95958547 ~ 95958815 (+)
G459453 NA non-coding downstream 69080 95959133 ~ 95959359 (+)
G459614 NA non-coding downstream 81949 95972002 ~ 95980662 (+)
G459617 NA non-coding downstream 100111 95990164 ~ 96076672 (+)
G459346 hdlbp other upstream 171845 95696263 ~ 95706519 (+)
G458015 NA other upstream 1742095 94135918 ~ 94136269 (+)
LOC110524846 LOC106560502 other upstream 2133369 93722660 ~ 93780941 (+)
G456927 NA other upstream 2528745 93348794 ~ 93349619 (+)
LOC110524836 rpl36 other upstream 2653273 93221830 ~ 93225091 (+)
G459843 NA other downstream 357233 96247286 ~ 96247962 (+)
ryk LOC106560633 other downstream 585021 96474920 ~ 96619822 (+)
G460428 NA other downstream 1032279 96922332 ~ 96922812 (+)
G461121 jade3 other downstream 1924314 97812808 ~ 97815973 (+)
G461826 NA other downstream 2784203 98674256 ~ 98677063 (+)

Expression

boka(LOC106560644) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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boka(LOC106560644) Expression in each Bioproject

Bar chart with 21 bars.
boka(LOC106560644) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network