zgc:103559 (LOC106560661)


Basic Information

Item Value
gene id zgc:103559
gene name LOC106560661
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 95931986 ~ 95957022 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978921.1
CATCCACAGTATTCCACAGAATATCTGCACACAGACCAGACTTAAAAGCAGAGTCCGTTTGTTTTACTCTTTAGACTAGCAGAACCCGTTTTGTTCCACCCTTTAGACTAGCAGAACCCGTTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTGGTTCCACTCTTTAGACTAGCAGAACCCGTTGGTTCCACTCTTTAGACTAGCAGAACCCGTTGGTTCCACTCTTTAGACTAGCAGAACCCGTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTGTTCCACTCTTTAGACTAGCCCAGGTAGTCCTGCAGTAATGGAGCCTGGGTCGACCGTGAGTGCAGTGAGGAGTAGCAGGGTTCTGTGTGGCACAGAGATACGGCCTGCTCTGATTGTCATCAAGGAAGGAAAGATACACAAAATCCTCCCAGACTCCAGTGGTTCTACTGGGGATACTGCTGCTGGCTGTGAGGTGTTGGATGTGGGAGACCATCTGGTGATGCCTGGTATCGTGGACTGTCACGTCCATGTGAATGAACCGGGTCGCACCACCTGGGAGGGATTCTGGACTGCCACGAGGGCCGCTGCTGCAGGAGGGGTCACTACCATAGTGGACATGCCCCTCAACAGCATCCCGCCGACCACCACCCTGGATAACTTCCATGAGAAGATGGCAGCAGCGTCGGGAAAGTGTTTTGTAGACACTGCCTTCTGGGGAGGGGTCGTCCCTGGCAACCAGCTGGAGCTGCTCCCCATGATTCGGGCTGGGGTGGCTGGTTTTAAATGTTTCCTGATCCACAGTGGAGTTGAGGAGTTCCCTCATGTGACTGACGGGGATCTGCACATCGCCATGAAACAGCTACAGGGCACAGGGAGCGTTCTCCTGTTTCATGCTGAGAGGGATACCCCCCTGCCatcagggaaagaagagagggatgtCCCTCTGCCATCAGAGGAAGCAGACCCCAAGGAGTACTCCACCTTCCTCAAGTCCAGACCAGATGTTATGGAGCTGGAGGCCATTCGAACTGTCACTGAGCTCTGCCTGAAATACCAgGTGCATTGCCACATAGTGCACCTGTCCTCTGCCCAGCCCCTGGCTCTGATCCAGGCTGCGAAGCAGGCCGGAGCCCCTCTGACGGTGGAGACCACCCATCACTACCTCAGCCTGTCTGCTGAACACATCCCTGCTGGGGCCACACAGTTCAAATGCTGTCCTCCTATCAGAGGGGTAGCTAACCAGGAGCAGCTGTGGTCTGCCCTGAAGGCTGGTCAGATTGACATGGTTGTGTCAGATCACTCCCCCTGCACACCAGACCTGAAGAGATTGGACAGTGGGGATTTCACTCAGGCCTGGGGAGGGATCTCCTCCTTACAGTTCGgtctgtctctgttctggaCGTCAGCCAGTAAGAAGGGTTTCACTCTGCCAGACGTGGTGAGGCTCCTCTGCCAGCGCACTGCACAACTCTGTCGCCTTGACAACCAGAAGGGGAGCCTTGTTCCCGGTCACGATGCAGACCTGGTCATATGGGACCCAGAGAAGGAGTTTGAGGTGAAAGACGCAAGTATACATCACAAAAATAAGctaaCTCCCTACCTGGGCCTGACGTTGCTTGGGGAGGTGAGTGTCACCATCGTCCGAGGCAGAGTGGTGTACAAGCAGGGTTCCTTCTCTCCTACGCCCCTGGGGAagcatctcctcctcccccaggggACGACCCAGGTCTCCCTGTGTGATGGAGAGAAGACCGAGGGGACCCAGGCCTCACGGTGATGGAGAGAAGACCGAGGGGACCCAGGCCTCACTGTGACTCCCTGGAAAACAGTGGCAAGACATGTTACCGAGGGGACAATCCTGGCTACATAAATACAATACAATTAAATAAATggaccatgggggggggggggggggggggggggcatgtgtgTCTCAAAGTTCATATGCTTGACTGTTGTTTTAAGATGTTTCAATAAACAAAGTAATCTCTTTCAAA
>XM_036978920.1
CCATCCACAGTATTCCACAGAATATCTGCACACAGACCAGACTTAAAAGCAGAGTCCGTTTGTTTTACTCTTTAGACTAGCAGAACCCGTTTTGTTCCACCCTTTAGACTAGCAGAACCCGTTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTGGTTCCACTCTTTAGACTAGCAGAACCCGTTGGTTCCACTCTTTAGACTAGCAGAACCCGTTGGTTCCACTCTTTAGACTAGCAGAACCCGTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTGTTCCACTCTTTAGACTAGCCCAGGTAGTCCTGCAGTAATGGAGCCTGGGTCGACCGTGAGTGCAGTGAGGAGTAGCAGGGTTCTGTGTGGCACAGAGATACGGCCTGCTCTGATTGTCATCAAGGAAGGAAAGATACACAAAATCCTCCCAGACTCCAGTGGTTCTACTGGGGATACTGCTGCTGGCTGTGAGGTGTTGGATGTGGGAGACCATCTGGTGATGCCTGGTATCGTGGACTGTCACGTCCATGTGAATGAACCGGGTCGCACCACCTGGGAGGGATTCTGGACTGCCACGAGGGCCGCTGCTGCAGGAGGGGTCACTACCATAGTGGACATGCCCCTCAACAGCATCCCGCCGACCACCACCCTGGATAACTTCCATGAGAAGATGGCAGCAGCGTCGGGAAAGTGTTTTGTAGACACTGCCTTCTGGGGAGGGGTCGTCCCTGGCAACCAGCTGGAGCTGCTCCCCATGATTCGGGCTGGGGTGGCTGGTTTTAAATGTTTCCTGATCCACAGTGGAGTTGAGGAGTTCCCTCATGTGACTGACGGGGATCTGCACATCGCCATGAAACAGCTACAGGGCACAGGGAGCGTTCTCCTGTTTCATGCTGAGAGGGATACCCCCCTGCCatcagggaaagaagagagggatgtCCCTCTGCCATCAGAGGAAGCAGgGGACACACCACTGCTTTCCATAGACCCCAAGGAGTACTCCACCTTCCTCAAGTCCAGACCAGATGTTATGGAGCTGGAGGCCATTCGAACTGTCACTGAGCTCTGCCTGAAATACCAgGTGCATTGCCACATAGTGCACCTGTCCTCTGCCCAGCCCCTGGCTCTGATCCAGGCTGCGAAGCAGGCCGGAGCCCCTCTGACGGTGGAGACCACCCATCACTACCTCAGCCTGTCTGCTGAACACATCCCTGCTGGGGCCACACAGTTCAAATGCTGTCCTCCTATCAGAGGGGTAGCTAACCAGGAGCAGCTGTGGTCTGCCCTGAAGGCTGGTCAGATTGACATGGTTGTGTCAGATCACTCCCCCTGCACACCAGACCTGAAGAGATTGGACAGTGGGGATTTCACTCAGGCCTGGGGAGGGATCTCCTCCTTACAGTTCGgtctgtctctgttctggaCGTCAGCCAGTAAGAAGGGTTTCACTCTGCCAGACGTGGTGAGGCTCCTCTGCCAGCGCACTGCACAACTCTGTCGCCTTGACAACCAGAAGGGGAGCCTTGTTCCCGGTCACGATGCAGACCTGGTCATATGGGACCCAGAGAAGGAGTTTGAGGTGAAAGACGCAAGTATACATCACAAAAATAAGctaaCTCCCTACCTGGGCCTGACGTTGCTTGGGGAGGTGAGTGTCACCATCGTCCGAGGCAGAGTGGTGTACAAGCAGGGTTCCTTCTCTCCTACGCCCCTGGGGAagcatctcctcctcccccaggggACGACCCAGGTCTCCCTGTGTGATGGAGAGAAGACCGAGGGGACCCAGGCCTCACGGTGATGGAGAGAAGACCGAGGGGACCCAGGCCTCACTGTGACTCCCTGGAAAACAGTGGCAAGACATGTTACCGAGGGGACAATCCTGGCTACATAAATACAATACAATTAAATAAATggaccatgggggggggggggggggggggggggcatgtgtgTCTCAAAGTTCATATGCTTGACTGTTGTTTTAAGATGTTTCAATAAACAAAGTAATCTCTTTCAAA

Function

NR:

description
PREDICTED: allantoinase, mitochondrial-like

GO:

id name namespace
GO:0000256 allantoin catabolic process biological_process
GO:0050897 cobalt ion binding molecular_function
GO:0004038 allantoinase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01466 allB; allantoinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978921.1 False 2187 mRNA 0.53 11 95931986 95957021
XM_036978920.1 True 2212 mRNA 0.53 11 95931986 95957022

Neighbor

gene id symbol gene type direction distance location
dtymk dtymk coding downstream 9607 95913874 ~ 95922379 (-)
hdlbpa hdlbp coding downstream 209388 95699436 ~ 95722598 (-)
trnap-ugg-7 NA coding downstream 234754 95697161 ~ 95697232 (-)
sox14 sox14 coding downstream 582859 95345148 ~ 95349127 (-)
LOC110524856 cldn18 coding downstream 807062 95111855 ~ 95124924 (-)
trnap-ugg-8 NA coding upstream 883480 96840502 ~ 96840573 (-)
trnap-cgg-2 NA coding upstream 883742 96840764 ~ 96840835 (-)
LOC110524866 LOC106560606 coding upstream 1199026 97156048 ~ 97157070 (-)
LOC118964738 NA coding upstream 1203763 97160785 ~ 97161999 (-)
LOC110524862 LOC106560604 coding upstream 1216945 97173967 ~ 97192535 (-)
G459595 NA non-coding downstream 255 95931381 ~ 95931731 (-)
G459567 NA non-coding downstream 6813 95876462 ~ 95925173 (-)
G459581 atg4b non-coding downstream 26183 95902786 ~ 95905803 (-)
G459588 NA non-coding downstream 30584 95901056 ~ 95901402 (-)
G459561 NA non-coding downstream 58918 95870225 ~ 95873068 (-)
G459738 NA non-coding upstream 78798 96035820 ~ 96038994 (-)
G459776 NA non-coding upstream 143525 96100547 ~ 96101294 (-)
G459779 NA non-coding upstream 160667 96117689 ~ 96120785 (-)
G459778 NA non-coding upstream 164612 96121634 ~ 96126775 (-)
G459788 NA non-coding upstream 191468 96148490 ~ 96157209 (-)
G459323 NA other downstream 329059 95602423 ~ 95602927 (-)
G459282 NA other downstream 372776 95558690 ~ 95559210 (-)
G457909 NA other downstream 2068372 93860846 ~ 93863614 (-)
G457742 NA other downstream 2468907 93462352 ~ 93463079 (-)
G457740 NA other downstream 2489573 93441900 ~ 93442413 (-)
G459813 NA other upstream 230446 96187468 ~ 96187983 (-)
G460020 NA other upstream 503885 96460907 ~ 96464598 (-)
G460331 NA other upstream 823821 96780843 ~ 96782021 (-)
G460354 NA other upstream 867213 96824235 ~ 96831126 (-)
G460623 NA other upstream 1071497 97028519 ~ 97030389 (-)

Expression


Co-expression Network