LOC110510444


Basic Information

Item Value
gene id LOC110510444
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 97290197 ~ 97568592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978955.1
TGCCTTACATGGTCAAACATCTCCACTGACTCTCTGACCTGTGGTAGTTCCTGCTCTGACGTCACCGCCTGCCACTCAGGTCTGGGGGAAAGAAGTTTCACTTTCTTAGTGGGATTCAGAAACGGTTGATTCCTAGAAAGCCGAGACGTGAAGAAAGAAGCACTGACCTGGAGGAGACCAAATAACCATCGTACCAGCTGTTAGGTCAATACTTCCACAGGAAGAGGTTTCTGACCCTGTGACTGGTCCCTCTGTGATCCTGaagggactctctctctctctctctctctctctctctgtgtgtgttgaaaAATCTGAACCATGTGGACCGGTGAAGGAGAGGTTCAGGTGAAAGCCCGGATGGAGACCACCCTTGCCATGGGCGTCCCTAGTATCTCTGTTTCCCAGAAACAGACCCCTAAAAAGTTTGGCCCTGTGGTGGCCCCGAAGCCCCAGTTCAACCCCTACAAGACGGGAGACCCCATTGACCTTGCTGAAGGGaactacccccctcctcctccacctgctgACTACGGAGGCCTCCCATCCCTCAtgtcctcccccccccctccatccatgGACAGAGAATACCAGATGTGCAGGCCACAGAAGACCCTAGAGGAGAGGCGGTCCAGTCTGGATGCTGAGATTGACTCTCTGACCTCTATCCTAGCTGACCTGGAGAGTAACTCACCTTACAAGCCCCGCATTGCACAGAACTCTGAAACTCTTCCGTCTGTGACCAGTCCCAATGCTCCGGTCACCGGCTACAAGCGTATGGTCATCCCGACTCAGCCTCCTCTGACGGCCACTAAGAAGTCCGGGGCCCCAGGTGGAACACTGCCCCGTTCCCAGGCGGAGCactccccctcctctgcctccccAGTGGCCAGGCCTCAGTTCCATACGGTGCCACAGCCAGTCCCAGCCACCTACGCCACAGCCTCCACCCCCAGCCAGCCTACCTTCAATGTACAGGTGAGGTCTGCCCAACCCGCCGCCCGGCACCAGTCCCCAGGACCCCCCCAGCAGTTTGCCCAGCAGCCGATCCGGAGCCCAGCCCAGGTCCAGTACATGTCTGCTCAGCCTCGAGGCCCTGACTCGGCCTACGGGCCCCCTCAGCCAGGCTCCGCCCCTCAGCCAGGCTCCGCCCCTCAGCCAGGCTCCGCCCCTCAGCCAGGCTCCGCCCCTCAGCCAGGCTTCGCCCCTCAGCCAGGCTTCGCCTCTCTGCCAGGCTTCGCCCCTCAGCCAGGCTCCGCCCCTCAGCCAGGCTCTGCACCACAAGGGTACCCAGAACAGGCCTACCCTGGACCAGGAGGGTACGGGGGAGAACCAGGAAACACCTGGAGACCCCAGCCTAGCTATACTGCTGCTCCTACCCAGCAGGGCTTCCCACAACCTGTCCCTAAGAAGACCTACATCACAGACCCTCCTGCCAGCCTGGCGCCTCCTGTACACCTCGCCCCACCGAAGGCTCCCAGCGGTGCCAGGCCTGAGGAAGAACTGGAGCGTCTCACCAAGAAGATGCTGTATGACATGGAAAACCCTCCGGCTGAAGAGTACTTTGGTGAGACAGAACTTTACAGTGCAGTAATCATATCATTACCTACGGTGAACGCCATTATAGGGGTCGATCCCTCcaaaaatagtgttttttttgGTCTCTTTGATAGGTTCAGTAGATATATTAAATGAAGGCTAATTtattaatatagaccacatggagaactCAAGAAGTCACATTTTTAATATGAAAAGACTTGCTAAAAGTGCTTAAAGTCAGCATTTTGACATTTTGTCCCTCCGTGCTCCCTGTAGGAAGATGTGAACCCACTAAACAT
>XM_036978956.1
TGCCTTACATGGTCAAACATCTCCACTGACTCTCTGACCTGTGGTAGTTCCTGCTCTGACGTCACCGCCTGCCACTCAGGTCTGGGGGAAAGAAGTTTCACTTTCTTAGTGGGATTCAGAAACGGTTGATTCCTAGAAAGCCGAGACGTGAAGAAAGAAGCACTGACCTGGAGGAGACCAAATAACCATCGTACCAGCTGTTAGGTCAATACTTCCACAGGAAGAGAACCATGTGGACCGGTGAAGGAGAGGTTCAGGTGAAAGCCCGGATGGAGACCACCCTTGCCATGGGCGTCCCTAGTATCTCTGTTTCCCAGAAACAGACCCCTAAAAAGTTTGGCCCTGTGGTGGCCCCGAAGCCCCAGTTCAACCCCTACAAGACGGGAGACCCCATTGACCTTGCTGAAGGGaactacccccctcctcctccacctgctgACTACGGAGGCCTCCCATCCCTCAtgtcctcccccccccctccatccatgGACAGAGAATACCAGATGTGCAGGCCACAGAAGACCCTAGAGGAGAGGCGGTCCAGTCTGGATGCTGAGATTGACTCTCTGACCTCTATCCTAGCTGACCTGGAGAGTAACTCACCTTACAAGCCCCGCATTGCACAGAACTCTGAAACTCTTCCGTCTGTGACCAGTCCCAATGCTCCGGTCACCGGCTACAAGCGTATGGTCATCCCGACTCAGCCTCCTCTGACGGCCACTAAGAAGTCCGGGGCCCCAGGTGGAACACTGCCCCGTTCCCAGGCGGAGCactccccctcctctgcctccccAGTGGCCAGGCCTCAGTTCCATACGGTGCCACAGCCAGTCCCAGCCACCTACGCCACAGCCTCCACCCCCAGCCAGCCTACCTTCAATGTACAGGTGAGGTCTGCCCAACCCGCCGCCCGGCACCAGTCCCCAGGACCCCCCCAGCAGTTTGCCCAGCAGCCGATCCGGAGCCCAGCCCAGGTCCAGTACATGTCTGCTCAGCCTCGAGGCCCTGACTCGGCCTACGGGCCCCCTCAGCCAGGCTCCGCCCCTCAGCCAGGCTCCGCCCCTCAGCCAGGCTCCGCCCCTCAGCCAGGCTCCGCCCCTCAGCCAGGCTTCGCCCCTCAGCCAGGCTTCGCCTCTCTGCCAGGCTTCGCCCCTCAGCCAGGCTCCGCCCCTCAGCCAGGCTCTGCACCACAAGGGTACCCAGAACAGGCCTACCCTGGACCAGGAGGGTACGGGGGAGAACCAGGAAACACCTGGAGACCCCAGCCTAGCTATACTGCTGCTCCTACCCAGCAGGGCTTCCCACAACCTGTCCCTAAGAAGACCTACATCACAGACCCTCCTGCCAGCCTGGCGCCTCCTGTACACCTCGCCCCACCGAAGGCTCCCAGCGGTGCCAGGCCTGAGGAAGAACTGGAGCGTCTCACCAAGAAGATGCTGTATGACATGGAAAACCCTCCGGCTGAAGAGTACTTTGGTGAGACAGAACTTTACAGTGCAGTAATCATATCATTACCTACGGTGAACGCCATTATAGGGGTCGATCCCTCcaaaaatagtgttttttttgGTCTCTTTGATAGGTTCAGTAGATATATTAAATGAAGGCTAATTtattaatatagaccacatggagaactCAAGAAGTCACATTTTTAATATGAAAAGACTTGCTAAAAGTGCTTAAAGTCAGCATTTTGACATTTTGTCCCTCCGTGCTCCCTGTAGGAAGATGTGAACCCACTAAACAT

Function

NR:

description
PREDICTED: lipoma-preferred partner homolog isoform X1

GO:

id name namespace
GO:0060030 dorsal convergence biological_process
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978955.1 False 1841 mRNA 0.56 11 97290197 97568592
XM_036978956.1 True 1750 mRNA 0.57 10 97290197 97568592

Neighbor

gene id symbol gene type direction distance location
LOC110524865 NA coding upstream 123242 97164039 ~ 97166955 (+)
LOC110524859 inpp5d coding upstream 146514 97098550 ~ 97143683 (+)
gpr17 gpr17 coding upstream 196944 97077790 ~ 97093253 (+)
LOC110523043 LOC106560627 coding upstream 221229 96998945 ~ 97068968 (+)
LOC110524860 LOC106560624 coding upstream 301457 96944007 ~ 96988740 (+)
LOC110524914 tomm70 coding downstream 108735 97677327 ~ 97708006 (+)
gtpbp6 gtpbp6 coding downstream 146803 97715395 ~ 97755155 (+)
LOC110524889 LOC106590724 coding downstream 319787 97888379 ~ 97967920 (+)
LOC118964703 NA coding downstream 391912 97960504 ~ 97962293 (+)
herc2 herc2 coding downstream 428833 97997425 ~ 98248889 (+)
G460741 NA non-coding upstream 4238 97284435 ~ 97285959 (+)
G460732 NA non-coding upstream 12806 97277169 ~ 97277391 (+)
G460726 NA non-coding upstream 16590 97273395 ~ 97273607 (+)
G460713 NA non-coding upstream 32644 97257333 ~ 97257553 (+)
G460544 NA non-coding upstream 56915 97229154 ~ 97233282 (+)
G460749 NA non-coding downstream 5347 97573939 ~ 97574697 (+)
G461029 NA non-coding downstream 11181 97579773 ~ 97581691 (+)
G461031 NA non-coding downstream 13468 97582060 ~ 97584452 (+)
G461034 NA non-coding downstream 20747 97589339 ~ 97589548 (+)
G461035 NA non-coding downstream 21321 97589913 ~ 97590219 (+)
G460428 NA other upstream 367385 96922332 ~ 96922812 (+)
ryk LOC106560633 other upstream 758143 96474920 ~ 96619822 (+)
G459843 NA other upstream 1042235 96247286 ~ 96247962 (+)
G459346 hdlbp other upstream 1583678 95696263 ~ 95706519 (+)
G458015 NA other upstream 3153928 94135918 ~ 94136269 (+)
G461121 jade3 other downstream 245775 97812808 ~ 97815973 (+)
G461826 NA other downstream 1105664 98674256 ~ 98677063 (+)
G461827 NA other downstream 1106540 98675132 ~ 98675999 (+)
G461999 NA other downstream 1205890 98774482 ~ 98779067 (+)
G462037 NA other downstream 1263865 98832457 ~ 98834433 (+)

Expression


Co-expression Network