gtpbp6 (gtpbp6)


Basic Information

Item Value
gene id gtpbp6
gene name gtpbp6
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 97715395 ~ 97755155 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978958.1
CCGGAAATGTCTAGTCGACATGTGCAGCTTCAAAACAACACCAGCAAATTATTTTAGACCTTTGCCATAAGTCGCTTCTGTCATCAGAATTGATTGCATTTTCAGCACTGATTCAATATTGCGAAAAGGTTTTGTAGCTAATTTCCTAGAACTGTAGTAATAATGCGTTGTTTTGGTCTCACTCACTTCCCAGTGACATTGTTAGTGGCAACGTTAGCTGGCTAACGGTAGCTAGCTAGTTCGCTACATAGCTAGgctactagctaacgttaggaaACCGTTATCATGTCAACCATAAAGTATTGTATGTTAGGTAACAATGTAGTTACACGTTTATTCCCCAAAAGGACCTATTCATGGTGTGTACAGTTGAAGCAGCAGCAGTTTTACTGCGCAGAGAACTGGCTTAAGTTACTAACAAGTTATAAATGCCATAAGAGATCACATCATGTCAATCAATCATCATATCAGTATATCTCACAATATGGGCTTCAACGTCACAGAGCTACAACAGTGTCATGGCAGACATCTATCCCCTTACAACACAGACGCTTTTCACTGTCAACATACCAGCTGAAAATTAGGGATGACGACCATACCCCAGGACATGAAAGCCTGGGCAGGGATGAGGAGGACGATTATATAGATGACAGTGAGATAGATGAGCTGTTTCAGCACCAGATCCCTATGGTCGGAGAGGGAGACCACCGCATCTTCATCGTCCATCCTGATGTGAAATGGGGAAGCAGGAAGCAGTACCTTACCACAGCCAATCTGATGATGGCGGAGGCAGTGGGTTTGGTCAACACTCTACACAACTGGAGTGTCATCGACAAGATCATCCTCTCCACCAAGACACCAGAGAAAAAGATGATCTTTGGCAAAGGCAACTTCCAGACGCTCACAGagAGAATCAGAAGAACTCCGGGAGTAACTGCTGTGTTTGTCAACGTGGAGCGTCTGTCCCCTGCCTCAGAGAAAGAGTTTGAGGAGGCGTGGGGGGTGAAGGTGTTTGACAGATACTCTGTGGTTCTCCATATCTTCCGCTGTAATGCCAGAACCAAGGAGGCCAAGCTACAGGTCTCCTTGGCTGAGATTCCACTGCTCAGATCCCGTTTGAGAAATGAAGTGGCCAACTTGGACCAGCAGGGTGGGGGCTCCAGATACATTATGGGTTCAGgTGAGACGCTGATGGAGGTACAGCAGAGAGTTTTGCAGGAGAGAGAGCTGAAGATCTGCTCTGCTCTGCAACATCTGAGGAGGAAGAGACACCTGCTCCGCTCCCAACGCAAAAACAGAGACTTCCCCATCATCTCTGTTATGGGCTATACCAACTGTGGTAAGACGACTCTGATCAAGGCGTTGACTGGTGACGCTGCGCTGCAGCCTAGAGATCAGCTGTTTGCCACGCTGGACGTCACGGTGCACGCCGGCACGCTGCCTAGTCACATGACTGTGCTTTACGTGGACACCATCGGCTTCCTGTCCCAGCTTCCTCACCGGCTCATAGACTCCTTCTCCGCCACGCTGGATGACGTCACTCACTCTGACCTGATAGTCCATGTGAGAGACATCAGCCACCCAGAGACTGTGAACCAGAAGGAGAATGTGTTGAATGTCCTGAGGAACCTTCAGATCCCAGACAGACTGCTGAGCTCCATCGTAGAAGTCCATAATAAGATAGATCTGGTGGACAGCTATGAGCCCTCTGAGCCCAACAGCCTGCCTATCTCTGCTCTGAGAGGACAGGGTCTGGAGGAGCTGAAGATAGTCGTAGAAGAAGCTATAATGAGATCTACAGGGAAACAGGCCCTGACTCTCCCTGTGGACCTCAGCAGCTCCCAGTTAAGCTGGCTGTACAAGGAGGCAACAGTTCAGGAAGTGGACGTTAACCCAGATGAAGGTTCCGCTGTCGTCAAGGTGATCATCAGTGCTGCTGCGTACGGACGCTACAGGAAGATGTTCTTAGGTAGTTAGAAACACTGCAGGTCTAAACCCTGGATGATTGACAGGAGGCTTTATTGAAGCCACCGCGCAgcaatagaaatgcatttattatattacagacaccttaatgcagaCTTCAAAAATGTTTTATGTTAGCTTAacatacaaataaaaacattttccttaataaagtatttattttttGAGTATTGTTACTGTCCCCCCTACAGCAACTAAAAATACTTGTATAATGGC
>TU522668
ggtaTCCTGTgacgatgccacgttgaaagtcactcagCTTTCAAcgtggccattctactgccaatgtttgtctatggagatcgcatggctgtgtgctcgattttacacaccagtcaacaacaggcgtggctgaaatagcagaatccactaatttgaaggggtgtccacatactgctgtatagaTAGTGTTCTTTCTCCTCGTTCTGTCCCCAGGACCTGATAGTCCATGTGAGAGACATCAGCCACCCAGAGACTGTGAACCAGAAGGAGAATGTGTTGAATGTCCTGAGGAACCTTCAGATCCCAGACAGACTGCTGAGCTCCATCGTAGAAGTCCATAATAAGATAGATCTGGTGGACAGCTATGAGCCCTCTGAGCCCAACAGCCTGCCTATCTCTGCTCTGAGAGGACAGGGTCTGGAGGAGCTGAAGATAGTCGTAGAAGAAGCTATAATGAGATCTACAGGGAAACAGGCCCTGACTCTCCCTGTGGACCTCAGCAGCTCCCAGTTAAGCTGGCTGTACAAGGAGGCAACAGTTCAGGAAGTGGACGTTAACCCAGATGAAGGTTCCGCTGTCGTCAAGGTGATCATCAGTGCTGCTGCGTACGGACGCTACAGGAAGATGTTCTTAGGTAGTTAGAAACACTGCAGGTCTAAACCCTGGATGATTGACAGGAGGCTTTATTGAAGCCACCGCGCAgcaatagaaatgcatttattatattacagacaccttaatgcagaCTTCAAAAATGTTTTATGTTAGCTTAacatac

Function

symbol description
gtpbp6 Predicted to enable ribosome binding activity. Predicted to be active in cytoplasm. Orthologous to human GTPBP6 (GTP binding protein 6 (putative)).

NR:

description
putative GTP-binding protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978958.1 False 2202 mRNA 0.47 10 97715395 97755155
TU522668 True 778 lncRNA 0.48 3 97744535 97755066

Neighbor

gene id symbol gene type direction distance location
LOC110524914 tomm70 coding upstream 7389 97677327 ~ 97708006 (+)
LOC110510444 NA coding upstream 146803 97290197 ~ 97568592 (+)
LOC110524865 NA coding upstream 548440 97164039 ~ 97166955 (+)
LOC110524859 inpp5d coding upstream 571712 97098550 ~ 97143683 (+)
gpr17 gpr17 coding upstream 622142 97077790 ~ 97093253 (+)
LOC110524889 LOC106590724 coding downstream 133224 97888379 ~ 97967920 (+)
LOC118964703 NA coding downstream 205349 97960504 ~ 97962293 (+)
herc2 herc2 coding downstream 242270 97997425 ~ 98248889 (+)
oca2 LOC106591054 coding downstream 521527 98276682 ~ 98442265 (+)
LOC110523047 LOC106560665 coding downstream 1306222 99061377 ~ 99101070 (+)
G461072 NA non-coding upstream 11707 97703156 ~ 97703688 (+)
G461065 NA non-coding upstream 12619 97702202 ~ 97702776 (+)
G461051 NA non-coding upstream 45638 97669548 ~ 97669757 (+)
G461042 NA non-coding upstream 47810 97638514 ~ 97667585 (+)
G461040 NA non-coding upstream 91534 97623590 ~ 97623861 (+)
G461113 NA non-coding downstream 30204 97785359 ~ 97785573 (+)
G461118 NA non-coding downstream 44053 97799208 ~ 97799805 (+)
G461126 NA non-coding downstream 51665 97806820 ~ 97808545 (+)
G461121 jade3 non-coding downstream 57653 97812808 ~ 97815973 (+)
G461129 NA non-coding downstream 65020 97820175 ~ 97820512 (+)
G460428 NA other upstream 792583 96922332 ~ 96922812 (+)
ryk LOC106560633 other upstream 1183341 96474920 ~ 96619822 (+)
G459843 NA other upstream 1467433 96247286 ~ 96247962 (+)
G459346 hdlbp other upstream 2008876 95696263 ~ 95706519 (+)
G458015 NA other upstream 3579126 94135918 ~ 94136269 (+)
G461826 NA other downstream 919101 98674256 ~ 98677063 (+)
G461827 NA other downstream 919977 98675132 ~ 98675999 (+)
G461999 NA other downstream 1019327 98774482 ~ 98779067 (+)
G462037 NA other downstream 1077302 98832457 ~ 98834433 (+)
G461093 NA non-coding upstream 1591 97736878 ~ 97742944 (+)

Expression


Co-expression Network