jade3 (LOC107585190)


Basic Information

Item Value
gene id jade3
gene name LOC107585190
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 97796243 ~ 97840872 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978962.1
AGTCTATGACCCAGCGGACAAGGTGGTACAATAGCCCTGTTATGCCGTAATGCGGAGAGCTTGCTGCTAACTCTGGGAAATACTGTCCCCCCAAAAATACCGTTTTACTAAGAGTCTGCGGTGTTTTATATGTGAGGAATTGGGTGATAGAAATCACGAGCTGCAGAATTTACCGCTGGCCCAAGggatgagaggaggttggtTGGAGTGCACCAGAGGAAGACTTTGTGACGTGACATTTATGGATACGTCAGGATGAAACGGCTCAGGTCTTCAAGCAGCAGTGACAGTTCTGACAATGAGAGTCCTTCCACCTCATTCTGCTCCTCCAACAAGTATGGAAGCAAACCTGGAACCCCTGCTCCCATGCCCAAGAAACCAGCAGAGgtGTTCAGGAAAGACCTGATCAGTGCCATGAAGCTGCCAGACTCTCACCATGTCTCCCCTGAAGACTATTACCTGCTGGGGGACACCTGGAGACAGGAGTGGGAGAAGGGGGTGCAGGTGCCCGCCTTCCCTGAAACCATCCCACACGCCTCTATCAGGAACATAGCGGAGAAGCCTAAGGAGACGGTGTTCACCCTACAGAAGAGGTATATCCAGTGTTGGAGCCAGGCCTCTACAGAGACGGGTTACGTTAACATCAAGGAGCTGGCTGAGGCCATGTGCTCTTATGACCTGGATAACATGGACCTCTACTGGCTGCAGGCACTCAACGCTGAGCTGGGACACATGGGGGAGGGGCCTGTAGACGAGCTGACAATGGAGCGCACCATGGAGGCGTTGGAGCGTCATTGCCATGACAACATGAACCACGCCATCGACACGGTAGAAGGGCTGGGCATCGAGTACGACGAGGATGTCATCTGTGACGTGTGTCGCTCCCCCGACAGCGAGGAGGGCAACGACATGGTCTTCTGTGACAAATGTAACATCTGTGTTCATCAGGCGTGTTATGGTATAGTGAAGGTACCAGATGGTAACTGGCTGTGCAGGACGTGTGTCCTGGGCATAGACCCCCAGTGTCAGCTGTGCCCCATCAAGGGAGGGGCGATGAAGGCTACGAGGGCGGGCACCAAGTGGGCACATGTCAGCTGTGCCCTGTGGATCCCTGAGGTGAGCATAGCGTGTCCAGAGAGGATGGAGCCCATCACCAAAGTGTCTCACATCCCCCCTTCCCGCTGGTCTCTCATCTGCAGCCTCTGTAAACTGAAGACTGGTGCCTGTATACAGTGCTCAGTGAAGAACTGCACCATCCCGTTCCATGTGACGTGTGCCTTCGAGTACAGCCTGGAGATGAAGACTGTCCTGGATGAAGGAGACGAGGTGAAgttcaggtcctactgcctgaaGCACAGCAAGCCCAAGAACCAGGCCTCCTCCGACCCAACAGCCCCCGGCCTCAGCCCCTGTCAACCAGCCCACAACAAGCAGCCCAAGGCAGGGGAGCCAGGCTCCGGTCTCAGTCCGGCCCGGCCCAAACCACCCGCAGACCCAGAGAGGGGGGGCCTGAGGGCCCAAAGGTTACTAGAACTAGAGGAGGAGTTTTCTACTCTGATTCACCCTGAGGAGCTGGCCCTGAACCTGGGCCTCCCTCCCAGCCTGCTGGACTTCATCTACCAGTACTGGAAACTGAAGAGGAAGAGCAACTTCAACCGTGCTCTGCTTCCCCCTAGTGAGGAGGAGGGTAACCTGCTGCTGTTGCCTCATGAAGACAGCATCCACACACGGATGAGGATGTTCATGCACCTCAGACAGGACTTAGAGAGGGTGAGGAACCTATGTTACATGGTGAGTCGGAGGGAGAAGCTGAAACTGTCTCAGAGCAAGGCCCAGGAGCAGATCTTCAACCTCCACGTCAAACTGCTCAACCAGGAGATCTCCGCTGGTCTGCCGGTGGACAGCATGTTGTTCCGGCCTCCTCCCAGAATCACCCTGAAGCTGAAGATGCCCAAAGTGTCGCTGGGTAATGGGAAGACCGGCTCCAAGTCAGGCAACGGCCCCCTCTGTCCAGATAACAGCGGGAATGTTCACGAACGTAGTGGGGGAGGGAAGGGGCTGGGGAAGCCTCAGCTCCATGGGCGAGGCAGGAGAGAGGAGCGCTCCAATGGCAGTCTACTAGGCTCAGCCCTGCCTATCAAATCTACTGGCAAGCCCCTGACTGGCAAAACCTTAACGGGTAAACCCCTGGTGCTCCATGGCCATTCCTCCAATGGAAATGTTAAACTGGACCCAGACCGAGCGGGCCACATCCCCAAATCCAACGGTGTGATGGAGAAGATGGTGGGCGTGACCCAGAAGGACACCGCCTGTCAGACCCCCAGTGAACAGGAAGCTGGTGAGGGGTCAGGGGGCAAGGGCAGCCAGTCAGCAAGCTTCAGGAGGTCAACCATGGAGCACTTCAGCCGGTCATTCAAGGAGGCGACGGTCAGTTTGGTGCGGACCACGGAGGACCTGCGGGGGGACAAGGTTTCCCAAGGGGGTAAAGGCTCCAGATCAGTCCAGGACCGGCCCTGGGCCAAACCAGCTGCTGGAGGCCCCCAGGGACTCGGTGGTACCAGATCAGCCCAGGACCAACCCTGGGCCAAACCAGCTCCTGGAGGCCCCCAAGGAGCCAGTGGTACCAGACCACCACCCTACCAGGAGACGGATGGATACTGCCCTGACCTGGAGCTCAGTGACTCGGAGCCAGAGGCTCAAGGTCAGAGGTGGAGGCAGGGTAGGGGTGACTCGGGGGGCCAGGCAGGAGGAGACTACAGCAGGGGGAACAGCAGAGGGAAGCAGGGCCTGGGGGGGTCCAGTAGAACCTCAGCACAGAGGTGACATCCCTGACCCCTCACCTACTGTAGACACTGGCCCCAGTTCTGTCACCGCTCTGTCATTCCCTCTCTGACCACTGGAGCCCTGACCAGCCATAGAGCAGCAGGGGCCAATCGCAGCCATCTATTGGTAAACTGGGGCATCTATTGGTCAACTGGGACCAGGCCCCCCAACACTGGCTGGAGCATCGATCTATTGGTCAACTGGGACCAGGGCCCTCTACACTGGCTGGGGCATCTATCTATTGGTCAACTGGGACCAGGCCCCCCTACACTGGCTGGAGCATCGATCTAATGGTCAACTGGGACCAGGGCCCCCTACACTGGCTGGGGCATCTATCTATTGGTCAACTGGGACAGGGCCCCCTACACTGGCTGGGGCATCTATCTATTGGTCAACTGGGACCAGGCCCCCCTACACTGGCTGGGGCATCTATCTATTGGTCAACTGGGACCAGGGCCCCCTACACTGGCTGGGGCATCGATCTATTGGTCAACTGGGACCAGGGCCCCCTACACTGGCTGGGGCATCTATCTATTGGTCAGCTGGGACCAGGGCCCCCTACACTGGCTGGGGCATCTATGTATTGGTCCGCtgagacacatacagacaggagCAAAGGACTGATGCATGGCGGGCGTCCTAGCCCAGATCATCACCTCAATGGGACTCCGACGTGTGTCCTCCTGTTACggatcctctatctctctccatgctcGCTGTGAGCGGAGCAGTGTTGTACTGTCTTCTGAGATTAAACGACTTGTCTGTTTA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: protein Jade-3

GO: NA

KEGG:

id description
K22156 JADE3; protein Jade-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978962.1 True 3594 mRNA 0.57 14 97796243 97840872

Neighbor

gene id symbol gene type direction distance location
si:dkey-66a8.7 LOC105028143 coding downstream 12456 97757371 ~ 97783787 (-)
LOC110524862 LOC106560604 coding downstream 603708 97173967 ~ 97192535 (-)
LOC118964738 NA coding downstream 634244 97160785 ~ 97161999 (-)
LOC110524866 LOC106560606 coding downstream 639173 97156048 ~ 97157070 (-)
trnap-cgg-2 NA coding downstream 955408 96840764 ~ 96840835 (-)
LOC110524920 LOC106590813 coding upstream 10106 97850978 ~ 97872968 (-)
LOC110524891 nipa2 coding upstream 127053 97967925 ~ 97984344 (-)
LOC118964707 herc2 coding upstream 151081 97991094 ~ 98008384 (-)
LOC118964705 NA coding upstream 394143 98235015 ~ 98236445 (-)
LOC118964704 NA coding upstream 395617 98236489 ~ 98237031 (-)
G461402 NA non-coding downstream 10679 97750904 ~ 97785564 (-)
G461417 NA non-coding downstream 16585 97779171 ~ 97779658 (-)
G461396 gtpbp6 non-coding downstream 41157 97744596 ~ 97755086 (-)
G461404 NA non-coding downstream 42076 97753770 ~ 97754167 (-)
G461403 NA non-coding downstream 42903 97751153 ~ 97753340 (-)
G461443 NA non-coding upstream 41731 97882603 ~ 97883096 (-)
G461452 NA non-coding upstream 67812 97908684 ~ 97909366 (-)
G461473 NA non-coding upstream 162821 98003693 ~ 98005649 (-)
G461501 NA non-coding upstream 235095 98075967 ~ 98076498 (-)
G460985 NA other downstream 287612 97508109 ~ 97508631 (-)
G460736 NA other downstream 515917 97278402 ~ 97280326 (-)
G460720 NA other downstream 527212 97268741 ~ 97269031 (-)
G460623 NA other downstream 765854 97028519 ~ 97030389 (-)
G460354 NA other downstream 967090 96824235 ~ 96831126 (-)
G461505 NA other upstream 241150 98082022 ~ 98082682 (-)
G461871 NA other upstream 629484 98470356 ~ 98470720 (-)
G462022 NA other upstream 954686 98795558 ~ 98800879 (-)

Expression


Co-expression Network