oca2 (LOC106591054)


Basic Information

Item Value
gene id oca2
gene name LOC106591054
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 98276682 ~ 98442265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978983.1
gctccatctcttctcctcctggaCTAGGAGAGATAgcacctcctcctcttttcctcctggACTAGGAAAGATAGCAgctccacctcttctcctcctggACTAGGAAAGATAGCAGCTCCACCTTTCCTTCTCGTTCCACCCAACCCTCCCAGTGGATAAGGAACAGAGCAGGACTGCCTTACCTCACACACCAAGACAGAAACAACATCACTAAACTGGGGCTTTGTATGGGACAGTCCACGTTTGTTGTTAGTTTTATCCGGGCACCTTCATCCTACctatcatcaacaccatcactatCAACAGAATTGCGCCTCACAGCATACAATTTTAAAgaccCTGTGTTGGACTACTCTCCAGTCTCAACATGTATCTGGAAAATAAGAGCGACCTGGACCTGAAGTCCCCAGCAGCAGCCCCTGGCCTCCAGGGAAGGTCCAGTCTGAGGACAGCGGAGGCGGTGGCGGGGGGCTACGGTGAGGTGGCGGGGGGCTACGGTGAGGTGGCGGGGAACTTTGGAGGTCTGCGTCTGCTGGAGGGGTTCTCAGGAAGGATAGAGTCTCAGAAACTACAACAGGCCTCGGCCAGATCCGCGGGGAACTGTGTTATGCATGCTGAAGACAGACAGAGCTTCAGTATGGTCAACTTTCTGAAGGGAAACACCAACCAGACGGGGTCCAACCACACAGAGAGATCTCCCCTCATCAGGTTCTCCCAAGATGACAGTATAACGTACATGACCCTGTATGAGGGGGAGGAGACGTGGGATAACAGCAGTTTGGAGCTGGATAGGAGGTGTCGTCTGGGGAGTGAGGTCACCAGCCTGTCCCTGTCACGATCCTCCTCCACAGAGAAAGACCCTCTGGACGTACACCTAAACTTCAAATTGTCCAACAGCATGAGATCTTGCATCTCCATCTTTAAAATCGGCTGTATCTTCACCTTTGTCGTCCTCATGTCTTTGTTCTTCAGTATGTATCCAGACAGAGACAACCCGTGGAGGATGCTGGCTGTCTCCCCTACAGAGAGCTTCTCTTTGAACCTGACGGATTTCCGTGACAACGCCTTGCTGAAGCTGCAGGTGGGCGGGCCTTTCGTGAGTGGCATGGTGGATCTGACCAATGAGGAGTACATCCTTATTCAGGTGGAGCAGACTGAAGAGGCGGGGCCACGGAGAAGGCGGGTCCAGACGGTGATCTATAACTGGACCATACCTCTGCATTCTGAACGGAGTGACCAGGTTATAACAACTAAAACATTTGAGATGTTGAGCAGtgACCCCATCATCATTACGGTGCAGGCGTTCGTCCAGGACAACTCCATGGTCCCTCTCTCCATGACCCACCAGTCGCTCTACGTAACCACGGAAAGGCAGGTGGTTATTGCTGCAGTCATCCTGGGAGGAGTTTACGTCCTCATCATCTTCgagattgtccatcgTACTCTGGCGGCCATGTTGGGATCTCTGGctgccctggctgctctggccaTGATCGGAGATcGTCCCAGTCTGAGCACTGTGGTGGAGTGGATCGACTATGAAACTCTGGCTCTTCTGTTTGGCATGATGATTCTAGTTGCCATCTTCTCAGAGACTGGTTTCTTTGACTACTGTGCTGTGAAGGCCTACCAGCTGTCCAGAGGCAAGGTCTGGCCCATGATCATCATCCTGTGTCTCATAGCAGCCATCCTGTCTGCCTTCCTGGACAACGTGACGACTATGATGCTCTTTACTCCTGTCACCATCAGGTTATGTGAGGTCCTCAACCTTGACCCCAGACACGTCCTGATAGCTGAGGTGATCTTCACCAACATCGGAGGAGCGGCAACAGCAGTCGGGGATCCACCCAACGTTATCATCGTCTCCAACCAGGACCTCCGGAAGAGTGGGATAGATTTTGCTAGTTTCACAGGCTACATGTTCCTGGGGATCTGTCTGGTCCTCTTCACCTCCTTCCCTTTCCTTCGTCTGCTCTACTGGAACAAGAAGCTATACAACAAGGAGTCCAGTGAGATCGTCGAGCTGAGGCATGAAATCCGTGTATGGAGGCAGACGGCCCAGCGTATTAGCCCGGCCAGCAGAGAGGAGACGGCTGTCAAGTGTCTACTGATGCAGAAGGTCCTCAACCTGGAGAGCGTGCTCCGCAAGCAACTCAAAACCTTCCAGAGACAGATTTCTCAGGAAGATAAGAACTGGGAGAATAACATTCAGGAGTTGCATAAAAAGaacagaataacaGACCGAGTACTCCTGGTGAAGTGTATATCTGTGCTGGGGGTCGTCATCTTCATGTTCTTCCTGAACTCCTTTGTTCCCAGCATTCATCTGGAGCTGGgTTGGATAGCTATCTTCGGGGCCCTGTGGCTGCTGGTGCTGGCTGACATCCAGGACTTTGAGATCATTCTGCACAGAGTGGAGTGGGCCACACTGCTGTTCTTCGCTGCTCTGTTTGTTCTCATGGAGGCTTTGGCCCAGCTACAGCTTATCGACTATATTGGTGTGCAGACGGCCCTGCTCATAAAAGCCGTGCCAGAAGAGCAGCGTTTGGCCATGGCCATCATCCTGGTCATGTGGGTCTCAGCTTTGGCCTCCTCCCTCATCGACAACATCCCCTTCACCGCCACCATGATCCCTGTCCTCATCAACCTGAGTCAAGATGCAGACGTCAACCTGCCTATCAAACCCCTTATCTTTGCACTGGCCATGGGAGCCTGTCTGGGAGGAAACGGAACATTGATTGGTGCGTCGGCCAATGTGGTGTGTGCAGGCATCGCTGAACAACATGGCTACGGCTTCTCCTTCATGGAATTCTTCAGGCTAGGCTTCCCCATGATGCTAATGACCTGTACCATAGGGATGTGCTACCTGCTGGCCACAATCATCGGACTGGGCTGGACCCTCTAACCTGCTCCTCACTGCACTACCAAAGAGAGACTGTTTGAGTGAATGTGTTTAGATACAGAGAGTTTCAAAGTGTTGGACGCAGCTCAAAAGCCACATGGAGATCAATCGTTCCTTCACAGATTCAAAGTTGCAGCTCATTTGGAAAGTGGTGGACATCATCTCGAGTACCTAGTCATATTGCAGTTATAATATGCAGTAGTTAGCCTACAACAGCAGTACAACAACAGCGATGTGTTGCAACATGAGGAAAACAAGCTAAACCAAGTGAATTAATTATAATCTACACTACATGGCCTCAGTCTAGAGATTTCTCAATGGTGCTCTTCTCTACAGCCCTCTCTTATCTCTCCAGGGTGCTCTTCAGTCTACAGCCCTCTCTTATCTCTCCATGGTGCTCTTCAGTCTACAGCCCTCTCTTATCTCTCCATGGTGCTCTTCATTCTAcagccctctcttctctctccatggtGCTCTTCATTTTACAGCCCTCTCTTATCTCTCCATGGTGCTCTTCAGTCTACAGTGCTCATTACACTGAGAATAATCAGAGGAGCAAGGCCTGAGTCTGCATGGCTCCCCATGGTGCTCTTTAGATCAACAGGGCTCTCCACGGTGCTCTTTAGATCAACAGGGCTCTCCATGGTGCTCTTTAGATCAGCAGGGCTCTCCATGGTGCACTTTAGATCAGCAGGGCTCTCCACAGTGCTCTTTAGATCAGCAGGGCTCTCCACGGTGCTCTTTAGatccacagggctctccagagtgcTCTTTAGATCCACAGGGCTCTCCATGGTGCTCTTTAGATCAGCAGGGCTCTCCATGGTGCTCTTTAGATCTACAGGGCTCTCCACGGTGCTCTTTAGATCCACAGGGCTCACCAGAGTGCTCT
>TU522962
ACCTGAGTCAAGATGCAGACGTCAACCTGCCTATCAAACCCCTTATCTTTGCACTGGCCATGGGAGCCTGTCTGGGAGGAAACGGAACATTGATTGGTGCGTCGGCCAATGTGGTGTGTGCAGGCATCGCTGAACAACATGGCTACGGCTTCTCCTTCATGGAATTCTTCAGGCTAGGCTTCCCCATGATGCTAATGACCTGTACCATAGGGATGTGCTACCTGCTGGCCACAATCATCGGACTGGGCTGGACCCTCTAACCTGCTCCTCACTGCACTACCAAAGAGAGACTGTTTGAGTGAATGTGTTTAGATACAGAGAGTTTCAAAGTGTTGGACGCAGCTCAAAAGCCACATGGAGATCAATCGTTCCTTCACAGATTCAAAGTTGCAGCTCATTTGGAAAGTGGTGGACATCATCTCGAGTACCTAGTCATATTGCAGTTATAATATGCAGTAGTTAGCCTACAACAGCAGTACAACAACAGCGATGTGTTGCAACATGAGGAAAACAAGCTAAACCAAGTGAATTAATTATAATCTACACTACATGGCCTCAGTCTAGAGATTTCTCAATGGTGCTCTTCTCTACAGCCCTCTCTTATCTCTCCAGGGTGCTCTTCAGTCTACAGCCCTCTCTTATCTCTCCATGGTGCTCTTCAGTCTACAGCCCTCTCTTATCTCTCCATGGTGCTCTTCATTCTACAGCCCTCTCTTATCTCTCCATGGTGCTCTTCAGTCTACAGTGCTCATTACACTGAGAATAATCAGA

Function

NR:

description
PREDICTED: P protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978983.1 False 3794 mRNA 0.52 24 98276682 98442265
TU522962 True 771 lncRNA 0.47 4 98419301 98441925

Neighbor

gene id symbol gene type direction distance location
herc2 herc2 coding upstream 27793 97997425 ~ 98248889 (+)
LOC110524889 LOC106590724 coding upstream 308762 97888379 ~ 97967920 (+)
LOC118964703 NA coding upstream 314389 97960504 ~ 97962293 (+)
gtpbp6 gtpbp6 coding upstream 521527 97715395 ~ 97755155 (+)
LOC110524914 tomm70 coding upstream 568676 97677327 ~ 97708006 (+)
LOC110523047 LOC106560665 coding downstream 619112 99061377 ~ 99101070 (+)
LOC110524867 bivm coding downstream 717641 99159906 ~ 99178822 (+)
LOC110523045 NA coding downstream 754075 99196283 ~ 99207807 (+)
LOC110490602 LOC106560622 coding downstream 931890 99374155 ~ 99401558 (+)
LOC118964709 NA coding downstream 1703338 100145603 ~ 100157146 (+)
G461265 NA non-coding upstream 10148 98261391 ~ 98266534 (+)
G461255 NA non-coding upstream 50066 98226032 ~ 98226616 (+)
G461251 NA non-coding upstream 56203 98219767 ~ 98220479 (+)
G461248 NA non-coding upstream 59776 98215908 ~ 98216906 (+)
G461244 NA non-coding upstream 72302 98198970 ~ 98204380 (+)
G461271 NA non-coding downstream 554 98442819 ~ 98443286 (+)
G461718 NA non-coding downstream 24799 98467064 ~ 98467295 (+)
G461725 NA non-coding downstream 30240 98472505 ~ 98528326 (+)
G461755 NA non-coding downstream 78697 98520962 ~ 98521740 (+)
G461786 NA non-coding downstream 134815 98577080 ~ 98579126 (+)
G461121 jade3 other upstream 460709 97812808 ~ 97815973 (+)
G460428 NA other upstream 1353870 96922332 ~ 96922812 (+)
ryk LOC106560633 other upstream 1744628 96474920 ~ 96619822 (+)
G459843 NA other upstream 2028720 96247286 ~ 96247962 (+)
G459346 hdlbp other upstream 2570163 95696263 ~ 95706519 (+)
G461826 NA other downstream 231991 98674256 ~ 98677063 (+)
G461827 NA other downstream 232867 98675132 ~ 98675999 (+)
G461999 NA other downstream 332217 98774482 ~ 98779067 (+)
G462037 NA other downstream 390192 98832457 ~ 98834433 (+)
G462233 NA other downstream 616618 99058883 ~ 99059354 (+)
G461332 NA non-coding upstream 5087 98413509 ~ 98414214 (+)
G461322 NA non-coding upstream 31287 98386973 ~ 98388014 (+)
G461318 NA non-coding upstream 41689 98377234 ~ 98377612 (+)
G461300 NA non-coding upstream 87498 98331584 ~ 98331803 (+)
G461299 NA non-coding upstream 90066 98328895 ~ 98329235 (+)

Expression


Co-expression Network