G357064


Basic Information

Item Value
gene id G357064
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19502 ~ 69804 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU405188
ggtctatcaaataatattagagacagtagatgtagctgactgtcgtaatataatagagacagtaggtctagttggtctgtcataatataatagagcagtagatctagctgatctgtcatattataatacagacagtagatctagctggtctgtcatgttataaaagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctttaatagtataatagagacagtggatatagcttgtctgtcatattataactgagacagtagacctagctggtctgtcataatataatagagacagtagatctagctggtctttcaaattataatagagacagtagatctagctggtctgttatgctataaaagagacagtagatctagctggtctgtcatattataatagagacagaagacctagctggtctgtcataatataatagagaccgtagatatagctggtctgtcatattataatagagacagtagatctagctggtctttcatcttaaaagagagacagtaaatctagcttgtctgtcataatataatagagacagtagatctagctggtctgtcatattataaaagagacagtagatctagctggtctgtcatattataatagcgacagtaaatatagctggtctgtcatattataaaagagacagtagatctagctggtctgtcaaattataatagcgacagtaaatatagctggtctgccatattataaaagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgttatattataatagagacagtagatctagctggtctgtgataatataatagagacagtagatctagctgttctgtcatatcatccaggtctgtgcccaaac
>TU405208
ggtctatcaaataatattagagacagtagatgtagctgactgtcgtaatataatagagacagtaggtctagttggtctgtcataatataatagagcagtagatctagctgatctgtcatattataatacagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagccaatagatctagctggtctgttataatataatagag
>TU405195
tagatctagctgatctgtcatattataatacagacagtagatctagctggtctgtcatgttataaaagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctttaatAGTATAATCGAGACAGTGgatatagcttgtctgtcatattataactgagacagtagacctagctggtctgtcataatataatagagacagtagatctagctggtctttcaaattataatagagacagtagatctagctggtctgttatgctataaaagagacagtagatctagctggtctgtcatattataatagagacagaatacctagctggtctgtcataatataatagagaccgtagatatagctggtctgtcatattataatagagacagtagatctagctggtctgtcatcttaaaaaagagacagtaaatctagctggtctgtcataatataatagagacagtagatctagctggtctgtaataatataatagagacagtagatctagctggtctgtcataatataatagatacagcagatctagctggtctgttataatataatagagacagtagatctagctggtctgtgataatataatagagacagtagatctagctggtctgttataatataatagagacagtagatcaagctggtctgttataatataatagagacagtagatctagctggtaagtCATATTATAAAacagacagaagatctagctggtctgtcataatat
>TU405204
aatagagacagtagatctagctggtctgtgataatataatagagacagtagatctagctggtctgttataatataatagagacagtagatctagctggtctgtcataatataatagatacatcagatctagctggtctgttataatataatagagacagtagatctagctggtctgtgataatataatagagacagtagatctagctggtctgttataatataatagagacagtagatcaagctggtctgttataatataatagagacagtagatctagctggtctgtcataatataatagatacatcagatctagctggtctgttataatataatagagacagtagatctagctggtctgtgataatataatagagacagtagatctagctggtctgttataatataatagatacatcagatctagctggtctgttataatataatagagacaatagatctagctggtctgtcataatataatagagagagtagatctagctggtctgttataaaataatagagacagcagatctagctggtctgttataatataatagagatagtagatatagctgtctgttataatataatagagacagtagatctagctggtctgtcataatataatagagacagcagatctagctggtctgtcataatataatagagacagcagatctagctggtctgtcataatataatagagacagtagatatagc
>TU405173
tgtagcttgtctgtcataatataatatagagagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtaataatataatagagacagtagctatagcttgtctgtcataatataatgtagagagtagatatagctggtctgttataatacaatagagacagtagatatagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagcagatctagctggtctgtcataatataatagagacagcagatctagctggtctgtaataatataatagagacagtagatatagctggtctgtcatgttatataagagaaagt
>TU405191
tgtagcttgtctgtcataatataatatagagagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctgttatattataatagagacagtagatctagctggtctgtgataatataatagagacagtagatctagctggtctgttataatataatagagacagtagatcaagctggtctgttataatataatagagacagtcgatctagctggtaagTCATATTAtaaaacagacagtagatctagctggtctgtcataatataatagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU405188 False 956 lncRNA 0.35 3 19502 69804
TU405208 False 242 lncRNA 0.34 2 19502 21220
TU405195 False 766 lncRNA 0.35 2 22693 38694
TU405204 False 723 lncRNA 0.33 2 35671 39010
TU405173 False 404 lncRNA 0.34 2 36241 40179
TU405191 True 325 lncRNA 0.34 2 36241 43827

Neighbor

gene id symbol gene type direction distance location
palm2akap2 LOC106568584 coding downstream 19244 89048 ~ 186339 (+)
LOC110523064 LOC106572881 coding downstream 155205 224811 ~ 285133 (+)
LOC110524922 LOC106572882 coding downstream 226822 296626 ~ 312598 (+)
LOC110523070 inip coding downstream 340957 410761 ~ 416534 (+)
LOC110524924 ptbp3 coding downstream 412621 482425 ~ 599279 (+)
G357109 NA non-coding downstream 43556 113360 ~ 118405 (+)
G357114 NA non-coding downstream 72371 142175 ~ 143689 (+)
G357118 NA non-coding downstream 79356 149160 ~ 152502 (+)
G357120 NA non-coding downstream 84938 154742 ~ 155312 (+)
G357126 NA non-coding downstream 102260 172064 ~ 172279 (+)
G357136 NA other downstream 130913 200717 ~ 201642 (+)
G357564 NA other downstream 869264 939068 ~ 939873 (+)
G357565 NA other downstream 870431 940235 ~ 940741 (+)
G358042 NA other downstream 1318591 1388395 ~ 1390468 (+)

Expression


Co-expression Network